Wall clock time and date at job start Fri Apr 10 2020 14:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47116 * 2 1 4 4 C 1.52996 * 109.47250 * 120.00284 * 2 1 3 5 5 C 1.53012 * 109.47121 * 64.99819 * 4 2 1 6 6 H 1.09000 * 109.47549 * 305.02412 * 5 4 2 7 7 C 1.53092 * 109.47948 * 185.00267 * 5 4 2 8 8 C 1.53174 * 109.16359 * 182.39936 * 7 5 4 9 9 H 1.09002 * 109.54156 * 297.02319 * 8 7 5 10 10 N 1.46493 * 109.54690 * 176.84865 * 8 7 5 11 11 C 1.34773 * 120.00480 * 154.99680 * 10 8 7 12 12 O 1.21593 * 119.99596 * 0.02562 * 11 10 8 13 13 N 1.34776 * 120.00282 * 179.97438 * 11 10 8 14 14 C 1.46506 * 120.00027 * 180.02562 * 13 11 10 15 15 C 1.50699 * 109.46888 * 179.97438 * 14 13 11 16 16 O 1.21293 * 119.99999 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99772 * 179.97438 * 15 14 13 18 18 C 1.37092 * 120.00123 * 179.97438 * 17 15 14 19 19 H 1.08002 * 120.00160 * 0.02562 * 18 17 15 20 20 C 1.38951 * 120.00419 * 180.02562 * 18 17 15 21 21 N 1.31414 * 119.99798 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00536 * 179.97438 * 20 18 17 23 23 H 1.48490 * 109.47339 * 180.02562 * 22 20 18 24 24 H 1.48493 * 109.47239 * 300.00506 * 22 20 18 25 25 H 1.48504 * 109.46636 * 60.00065 * 22 20 18 26 26 C 1.53176 * 109.03677 * 56.97644 * 8 7 5 27 27 C 1.53096 * 109.16427 * 303.02096 * 26 8 7 28 28 O 1.42900 * 109.48902 * 65.05224 * 5 4 2 29 29 H 1.09004 * 109.47341 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47005 * 300.00185 * 1 2 3 31 31 H 1.09004 * 109.47019 * 60.00034 * 1 2 3 32 32 H 1.09009 * 109.47107 * 240.00244 * 2 1 3 33 33 H 1.09000 * 109.46864 * 180.02562 * 3 2 1 34 34 H 1.08991 * 109.47457 * 299.99798 * 3 2 1 35 35 H 1.09000 * 109.46946 * 60.00364 * 3 2 1 36 36 H 1.09000 * 109.47180 * 304.99945 * 4 2 1 37 37 H 1.08997 * 109.47311 * 184.99867 * 4 2 1 38 38 H 1.08998 * 109.52208 * 62.48889 * 7 5 4 39 39 H 1.08997 * 109.52100 * 302.30365 * 7 5 4 40 40 H 0.97005 * 119.99968 * 334.99431 * 10 8 7 41 41 H 0.96996 * 120.00282 * 359.97438 * 13 11 10 42 42 H 1.08997 * 109.46855 * 59.99822 * 14 13 11 43 43 H 1.09007 * 109.46712 * 300.00101 * 14 13 11 44 44 H 0.97000 * 119.99732 * 0.02562 * 17 15 14 45 45 H 0.96996 * 120.00340 * 179.97438 * 21 20 18 46 46 H 1.09000 * 109.52302 * 62.92692 * 26 8 7 47 47 H 1.08998 * 109.51902 * 183.11723 * 26 8 7 48 48 H 1.08992 * 109.47962 * 297.62608 * 27 26 8 49 49 H 1.08994 * 109.47924 * 177.59066 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6352 -2.1956 1.1878 6 1 0.5563 -2.2709 1.0522 7 6 2.0354 -2.8896 2.4924 8 6 1.6815 -4.3770 2.3998 9 1 0.6024 -4.4891 2.2943 10 7 2.1291 -5.0639 3.6138 11 6 1.5248 -6.2031 4.0053 12 8 0.6083 -6.6611 3.3506 13 7 1.9370 -6.8353 5.1220 14 6 1.2805 -8.0740 5.5472 15 6 1.9252 -8.5750 6.8139 16 8 2.8425 -7.9578 7.3126 17 7 1.4818 -9.7083 7.3930 18 6 2.0686 -10.1644 8.5450 19 1 2.8860 -9.6153 8.9887 20 6 1.6119 -11.3331 9.1419 21 7 0.6177 -12.0016 8.6018 22 14 2.4119 -11.9549 10.7112 23 1 1.7467 -13.2107 11.1419 24 1 3.8518 -12.2185 10.4619 25 1 2.2735 -10.9301 11.7769 26 6 2.3830 -4.9826 1.1802 27 6 1.9692 -4.2077 -0.0737 28 8 2.2987 -2.8270 0.0909 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6054 -0.2618 2.1369 37 1 3.1263 -0.6444 1.2951 38 1 1.4966 -2.4381 3.3254 39 1 3.1085 -2.7796 2.6491 40 1 2.8606 -4.6987 4.1360 41 1 2.6689 -6.4706 5.6437 42 1 1.3832 -8.8265 4.7654 43 1 0.2231 -7.8809 5.7290 44 1 0.7479 -10.2017 6.9943 45 1 0.2990 -12.8176 9.0182 46 1 3.4631 -4.9149 1.3103 47 1 2.0926 -6.0278 1.0747 48 1 0.8948 -4.3094 -0.2258 49 1 2.4984 -4.6070 -0.9389 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345564246.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:26 Heat of formation + Delta-G solvation = -163.334471 kcal Electronic energy + Delta-G solvation = -27674.656117 eV Core-core repulsion = 23634.722852 eV Total energy + Delta-G solvation = -4039.933265 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.48324 -40.53048 -39.86800 -37.20836 -36.35630 -36.09614 -35.27001 -33.38926 -32.68922 -32.39241 -29.19824 -28.02220 -27.86609 -26.40075 -24.87543 -23.54920 -21.86083 -21.51366 -21.34276 -20.73080 -20.11811 -19.52065 -17.72940 -17.41846 -17.31853 -16.87485 -16.72329 -16.51582 -16.06833 -15.96797 -15.77162 -15.46235 -15.30765 -15.13875 -14.98154 -14.55508 -14.05557 -13.99664 -13.93446 -13.59118 -13.53491 -13.07891 -13.01346 -12.89995 -12.81354 -12.46864 -12.44017 -12.29985 -12.13569 -12.10027 -11.82508 -11.56120 -11.54425 -11.50238 -11.43085 -11.04515 -10.56098 -10.50232 -10.41111 -10.10270 -9.84388 -8.50656 -6.01101 1.38341 1.42545 1.52030 1.58929 1.89857 2.09870 2.28772 2.83063 3.02883 3.16468 3.29084 3.57690 3.78740 3.85335 4.08582 4.09433 4.10231 4.19716 4.22394 4.28657 4.40117 4.42772 4.45706 4.54431 4.63042 4.72875 4.80809 4.82929 4.86865 4.91133 5.01211 5.05405 5.10464 5.12660 5.15697 5.23672 5.30702 5.38591 5.39710 5.49290 5.51992 5.59388 5.91009 5.95246 6.30479 6.48142 7.01768 7.03448 7.42582 7.52371 7.94442 8.65909 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.035468 B = 0.001738 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.248655 B =16109.827215 C =16387.123017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.146 4.146 4 C -0.103 4.103 5 C 0.092 3.908 6 H 0.064 0.936 7 C -0.149 4.149 8 C 0.163 3.837 9 H 0.071 0.929 10 N -0.728 5.728 11 C 0.705 3.295 12 O -0.631 6.631 13 N -0.724 5.724 14 C 0.142 3.858 15 C 0.433 3.567 16 O -0.624 6.624 17 N -0.559 5.559 18 C -0.339 4.339 19 H 0.087 0.913 20 C -0.010 4.010 21 N -0.915 5.915 22 Si 0.998 3.002 23 H -0.272 1.272 24 H -0.270 1.270 25 H -0.270 1.270 26 C -0.163 4.163 27 C 0.068 3.932 28 O -0.386 6.386 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.410 0.590 41 H 0.410 0.590 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.399 0.601 45 H 0.280 0.720 46 H 0.075 0.925 47 H 0.060 0.940 48 H 0.053 0.947 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.230 22.558 -17.241 28.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.113 4.113 3 C -0.203 4.203 4 C -0.140 4.140 5 C 0.034 3.966 6 H 0.082 0.918 7 C -0.187 4.187 8 C 0.058 3.942 9 H 0.089 0.911 10 N -0.383 5.383 11 C 0.405 3.595 12 O -0.512 6.512 13 N -0.382 5.382 14 C 0.014 3.986 15 C 0.220 3.780 16 O -0.512 6.512 17 N -0.194 5.194 18 C -0.469 4.469 19 H 0.105 0.895 20 C -0.211 4.211 21 N -0.555 5.555 22 Si 0.821 3.179 23 H -0.196 1.196 24 H -0.195 1.195 25 H -0.195 1.195 26 C -0.202 4.202 27 C -0.009 4.009 28 O -0.305 6.305 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.107 0.893 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.246 0.754 41 H 0.248 0.752 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.233 0.767 45 H 0.089 0.911 46 H 0.094 0.906 47 H 0.079 0.921 48 H 0.072 0.928 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.019 22.449 -17.542 28.508 hybrid contribution 0.291 -0.957 1.216 1.575 sum 1.310 21.492 -16.326 27.021 Atomic orbital electron populations 1.21909 0.95213 1.01528 1.02049 1.21044 0.95828 0.96270 0.98206 1.21823 1.00985 0.95464 1.02019 1.21672 1.02029 0.91257 0.99023 1.22226 0.96418 0.93207 0.84762 0.91820 1.22494 1.03855 0.92635 0.99735 1.20869 0.98855 0.91668 0.82845 0.91099 1.45042 1.39368 1.24806 1.29058 1.15967 0.81926 0.81087 0.80547 1.90878 1.33667 1.68915 1.57749 1.44702 1.39931 1.26405 1.27137 1.20572 0.96998 0.86971 0.94087 1.20412 0.86503 0.83146 0.87922 1.90465 1.33737 1.59557 1.67467 1.41824 1.32500 1.21635 1.23440 1.19712 1.16997 1.07951 1.02193 0.89534 1.26130 0.96631 0.95820 1.02491 1.69675 1.26430 1.17735 1.41689 0.84917 0.78239 0.77665 0.77096 1.19640 1.19527 1.19493 1.22584 1.01639 1.00265 0.95711 1.22544 1.00326 0.80915 0.97096 1.87922 1.69254 1.23203 1.50105 0.93116 0.92200 0.92598 0.91700 0.92694 0.92583 0.92255 0.89262 0.91045 0.89108 0.89547 0.75413 0.75228 0.89166 0.89090 0.76703 0.91065 0.90582 0.92088 0.92832 0.87367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.95 71.98 0.64 -1.01 16 2 C -0.09 -1.10 2.87 -10.80 -0.03 -1.13 16 3 C -0.15 -1.42 9.19 71.98 0.66 -0.76 16 4 C -0.10 -1.16 4.39 30.60 0.13 -1.02 16 5 C 0.09 1.29 2.51 30.63 0.08 1.36 16 6 H 0.06 0.91 6.34 -2.39 -0.02 0.89 16 7 C -0.15 -2.09 4.89 30.68 0.15 -1.94 16 8 C 0.16 3.24 2.54 45.11 0.11 3.36 16 9 H 0.07 1.70 7.57 -2.39 -0.02 1.69 16 10 N -0.73 -16.38 5.09 -457.26 -2.33 -18.71 16 11 C 0.71 22.12 8.54 179.06 1.53 23.65 16 12 O -0.63 -24.07 16.01 -4.01 -0.06 -24.13 16 13 N -0.72 -23.75 5.53 -482.28 -2.67 -26.42 16 14 C 0.14 5.24 6.15 85.63 0.53 5.77 16 15 C 0.43 19.95 7.85 87.66 0.69 20.64 16 16 O -0.62 -32.03 15.24 -3.07 -0.05 -32.08 16 17 N -0.56 -28.02 5.29 -306.99 -1.62 -29.64 16 18 C -0.34 -18.65 9.68 84.04 0.81 -17.83 16 19 H 0.09 4.98 7.16 -2.91 -0.02 4.96 16 20 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 21 N -0.92 -48.52 13.05 21.66 0.28 -48.24 16 22 Si 1.00 41.58 29.55 68.60 2.03 43.60 16 23 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 24 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 25 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 26 C -0.16 -3.16 5.72 30.69 0.18 -2.98 16 27 C 0.07 1.12 6.84 72.01 0.49 1.61 16 28 O -0.39 -6.61 9.86 -148.98 -1.47 -8.08 16 29 H 0.05 0.61 6.46 -2.38 -0.02 0.60 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.06 0.94 7.70 -2.38 -0.02 0.92 16 33 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.41 7.18 8.62 -92.70 -0.80 6.38 16 41 H 0.41 13.03 7.45 -92.71 -0.69 12.34 16 42 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 43 H 0.09 3.22 8.14 -2.38 -0.02 3.20 16 44 H 0.40 19.25 7.90 -92.71 -0.73 18.52 16 45 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 46 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -66.74 396.22 -0.69 -67.44 By element: Atomic # 1 Polarization: 47.85 SS G_CDS: -1.25 Total: 46.60 kcal Atomic # 6 Polarization: 23.21 SS G_CDS: 6.44 Total: 29.66 kcal Atomic # 7 Polarization: -116.68 SS G_CDS: -6.33 Total: -123.01 kcal Atomic # 8 Polarization: -62.71 SS G_CDS: -1.58 Total: -64.29 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.60 kcal Total: -66.74 -0.69 -67.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345564246.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.897 kcal (2) G-P(sol) polarization free energy of solvation -66.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds