Wall clock time and date at job start Fri Apr 10 2020 14:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47425 * 2 1 4 4 C 1.53002 * 109.47071 * 239.99894 * 2 1 3 5 5 C 1.53004 * 109.47150 * 119.99936 * 2 1 3 6 6 H 1.08992 * 109.49191 * 299.97298 * 5 2 1 7 7 C 1.53093 * 109.47891 * 179.97438 * 5 2 1 8 8 C 1.53180 * 109.15823 * 182.41039 * 7 5 2 9 9 H 1.09000 * 109.61762 * 297.06610 * 8 7 5 10 10 N 1.46500 * 109.54052 * 176.84875 * 8 7 5 11 11 C 1.34782 * 120.00016 * 155.44498 * 10 8 7 12 12 O 1.21589 * 119.99616 * 359.97438 * 11 10 8 13 13 N 1.34775 * 120.00074 * 180.02562 * 11 10 8 14 14 C 1.46499 * 120.00181 * 179.97438 * 13 11 10 15 15 C 1.50700 * 109.47257 * 179.97438 * 14 13 11 16 16 O 1.21293 * 119.99810 * 359.97438 * 15 14 13 17 17 N 1.34777 * 119.99675 * 180.27849 * 15 14 13 18 18 C 1.37102 * 119.99634 * 179.72687 * 17 15 14 19 19 H 1.08002 * 119.99868 * 359.97438 * 18 17 15 20 20 C 1.38945 * 119.99860 * 179.97438 * 18 17 15 21 21 N 1.31414 * 119.99894 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99956 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47031 * 60.00269 * 22 20 18 24 24 H 1.48504 * 109.46971 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47038 * 300.00246 * 22 20 18 26 26 C 1.53172 * 109.03875 * 56.98400 * 8 7 5 27 27 C 1.53093 * 109.16325 * 303.01587 * 26 8 7 28 28 O 1.42906 * 109.41195 * 57.61091 * 27 26 8 29 29 H 1.08997 * 109.46911 * 300.00322 * 1 2 3 30 30 H 1.09005 * 109.46808 * 60.00014 * 1 2 3 31 31 H 1.08997 * 109.47160 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46923 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.46665 * 300.00025 * 3 2 1 34 34 H 1.09001 * 109.46500 * 59.99631 * 3 2 1 35 35 H 1.08997 * 109.47431 * 300.00205 * 4 2 1 36 36 H 1.08998 * 109.46897 * 60.00167 * 4 2 1 37 37 H 1.09008 * 109.47034 * 179.97438 * 4 2 1 38 38 H 1.08999 * 109.52265 * 62.50729 * 7 5 2 39 39 H 1.09002 * 109.52381 * 302.31581 * 7 5 2 40 40 H 0.97002 * 120.00099 * 335.44152 * 10 8 7 41 41 H 0.97002 * 120.00040 * 359.97438 * 13 11 10 42 42 H 1.09009 * 109.46700 * 59.99666 * 14 13 11 43 43 H 1.08998 * 109.46827 * 300.00240 * 14 13 11 44 44 H 0.97001 * 120.00485 * 359.71840 * 17 15 14 45 45 H 0.97004 * 119.99542 * 179.97438 * 21 20 18 46 46 H 1.09005 * 109.52652 * 62.92488 * 26 8 7 47 47 H 1.08997 * 109.52455 * 183.10966 * 26 8 7 48 48 H 1.09000 * 109.48342 * 177.59143 * 27 26 8 49 49 H 1.08995 * 109.48060 * 297.62943 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 1 1.6773 -0.2074 2.1394 7 6 3.5710 -0.7219 1.2491 8 6 4.0735 -1.4975 2.4708 9 1 3.7526 -0.9928 3.3820 10 7 5.5364 -1.5678 2.4388 11 6 6.2281 -1.7388 3.5829 12 8 5.6378 -1.8343 4.6416 13 7 7.5740 -1.8030 3.5536 14 6 8.3258 -1.9883 4.7972 15 6 9.8009 -2.0269 4.4914 16 8 10.1863 -1.9114 3.3472 17 7 10.6916 -2.1958 5.4888 18 6 12.0334 -2.2364 5.2099 19 1 12.3765 -2.1335 4.1911 20 6 12.9516 -2.4101 6.2381 21 7 12.5340 -2.5358 7.4778 22 14 14.7797 -2.4662 5.8582 23 1 15.1921 -1.1900 5.2206 24 1 15.5415 -2.6594 7.1182 25 1 15.0587 -3.5943 4.9336 26 6 3.4916 -2.9140 2.4374 27 6 1.9637 -2.8287 2.3916 28 8 1.5645 -2.0689 1.2490 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1392 37 1 3.1301 -0.7209 -1.2495 38 1 3.9357 0.3043 1.2939 39 1 3.9350 -1.1995 0.3394 40 1 6.0073 -1.4913 1.5942 41 1 8.0449 -1.7265 2.7090 42 1 8.0275 -2.9263 5.2657 43 1 8.1163 -1.1609 5.4751 44 1 10.3834 -2.2885 6.4038 45 1 13.1751 -2.6574 8.1955 46 1 3.8540 -3.4359 1.5517 47 1 3.7995 -3.4555 3.3318 48 1 1.5454 -3.8330 2.3245 49 1 1.5995 -2.3427 3.2966 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345735945.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:35 Heat of formation + Delta-G solvation = -134.143858 kcal Electronic energy + Delta-G solvation = -28188.204755 eV Core-core repulsion = 24149.537290 eV Total energy + Delta-G solvation = -4038.667465 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.60186 -39.55146 -38.20767 -36.69584 -35.34578 -34.38686 -33.65553 -31.62029 -31.30344 -30.52711 -27.73800 -27.60221 -27.35550 -24.93060 -24.14456 -23.83229 -20.90005 -20.63097 -19.60724 -19.18287 -18.39797 -17.95597 -16.77333 -16.43844 -15.87263 -15.57877 -15.45963 -15.11039 -14.87586 -14.68677 -14.44709 -14.30803 -14.08554 -13.97218 -13.87684 -13.54848 -13.32286 -13.20895 -12.57259 -12.37619 -12.18395 -12.06036 -11.97116 -11.92007 -11.65099 -11.63297 -11.38801 -11.13799 -11.09622 -11.02978 -10.83576 -10.51267 -10.45158 -10.32196 -10.14098 -9.73840 -9.63049 -9.16716 -8.63181 -8.62430 -8.10383 -6.51632 -3.93787 2.76824 3.13327 3.21171 3.25109 3.37197 3.44109 3.74775 4.07780 4.23683 4.34938 4.43424 4.55924 4.64689 4.74931 4.80564 4.89531 4.93098 4.97781 5.10902 5.16942 5.25854 5.28553 5.30204 5.36258 5.46107 5.49408 5.55383 5.63237 5.68055 5.70380 5.77246 5.81611 5.87358 5.91813 5.99705 6.02103 6.07353 6.07981 6.12013 6.51317 6.74508 6.97580 7.09180 7.45441 7.91846 8.22702 8.44875 8.78368 9.04201 9.39115 9.87054 10.65141 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.031139 B = 0.001903 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.983099 B =14707.474772 C =15137.882335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.059 4.059 3 C -0.146 4.146 4 C -0.140 4.140 5 C 0.107 3.893 6 H 0.060 0.940 7 C -0.162 4.162 8 C 0.166 3.834 9 H 0.088 0.912 10 N -0.744 5.744 11 C 0.705 3.295 12 O -0.598 6.598 13 N -0.724 5.724 14 C 0.129 3.871 15 C 0.428 3.572 16 O -0.598 6.598 17 N -0.549 5.549 18 C -0.306 4.306 19 H 0.105 0.895 20 C 0.026 3.974 21 N -0.895 5.895 22 Si 0.934 3.066 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.273 1.273 26 C -0.168 4.168 27 C 0.066 3.934 28 O -0.375 6.375 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.396 0.604 41 H 0.407 0.593 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.396 0.604 45 H 0.275 0.725 46 H 0.072 0.928 47 H 0.081 0.919 48 H 0.096 0.904 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.114 3.948 -12.881 26.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.060 4.060 3 C -0.203 4.203 4 C -0.197 4.197 5 C 0.048 3.952 6 H 0.078 0.922 7 C -0.200 4.200 8 C 0.060 3.940 9 H 0.106 0.894 10 N -0.399 5.399 11 C 0.405 3.595 12 O -0.477 6.477 13 N -0.382 5.382 14 C 0.000 4.000 15 C 0.214 3.786 16 O -0.485 6.485 17 N -0.184 5.184 18 C -0.435 4.435 19 H 0.123 0.877 20 C -0.177 4.177 21 N -0.535 5.535 22 Si 0.761 3.239 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.198 1.198 26 C -0.207 4.207 27 C -0.012 4.012 28 O -0.293 6.293 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.230 0.770 41 H 0.244 0.756 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.230 0.770 45 H 0.085 0.915 46 H 0.091 0.909 47 H 0.099 0.901 48 H 0.114 0.886 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -23.346 3.833 -12.585 26.797 hybrid contribution 1.498 0.003 0.021 1.498 sum -21.847 3.836 -12.564 25.493 Atomic orbital electron populations 1.21807 0.93909 1.02481 1.01345 1.20534 0.96314 0.94813 0.94296 1.21948 1.01490 0.94662 1.02185 1.21871 1.00966 1.00900 0.95992 1.22021 0.91707 0.83535 0.97897 0.92236 1.22662 0.96916 1.01704 0.98705 1.20739 0.78779 0.95479 0.98985 0.89443 1.45121 1.06504 1.79835 1.08478 1.15875 0.81642 0.77925 0.84091 1.90897 1.69097 1.58463 1.29249 1.44786 1.04195 1.77628 1.11545 1.20779 0.90512 1.02724 0.85949 1.19766 0.86959 0.85503 0.86382 1.90489 1.79943 1.57216 1.20869 1.41783 1.06271 1.61644 1.08661 1.19677 0.80608 1.47444 0.95782 0.87747 1.25329 1.00974 0.96767 0.94664 1.69611 1.36096 1.48391 0.99362 0.85866 0.81337 0.79102 0.77611 1.19789 1.20850 1.19794 1.22654 0.96276 0.98062 1.03723 1.22539 0.93589 0.96446 0.88591 1.87907 1.74536 1.23056 1.43849 0.92906 0.92780 0.91720 0.92037 0.92047 0.92439 0.91722 0.92919 0.92497 0.89949 0.90002 0.77017 0.75618 0.90054 0.90054 0.77008 0.91535 0.90914 0.90055 0.88616 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 8.33 37.16 0.31 -0.61 16 2 C -0.06 -0.41 0.63 -154.50 -0.10 -0.51 16 3 C -0.15 -0.88 8.12 37.16 0.30 -0.57 16 4 C -0.14 -0.97 7.98 37.16 0.30 -0.67 16 5 C 0.11 0.85 1.91 -26.68 -0.05 0.80 16 6 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 7 C -0.16 -1.30 4.17 -26.59 -0.11 -1.41 16 8 C 0.17 1.74 2.54 -67.75 -0.17 1.57 16 9 H 0.09 1.07 7.59 -51.93 -0.39 0.68 16 10 N -0.74 -8.81 5.09 -58.50 -0.30 -9.11 16 11 C 0.71 11.32 8.53 -86.91 -0.74 10.58 16 12 O -0.60 -11.50 16.01 5.29 0.08 -11.42 16 13 N -0.72 -12.14 5.53 -66.41 -0.37 -12.51 16 14 C 0.13 2.40 6.15 -5.19 -0.03 2.37 16 15 C 0.43 9.84 7.85 -10.98 -0.09 9.75 16 16 O -0.60 -15.29 15.24 5.55 0.08 -15.20 16 17 N -0.55 -13.63 5.29 -10.96 -0.06 -13.69 16 18 C -0.31 -8.31 9.68 -14.93 -0.14 -8.45 16 19 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 20 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 21 N -0.89 -23.88 13.05 55.50 0.72 -23.15 16 22 Si 0.93 20.53 29.55 -169.99 -5.02 15.50 16 23 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 26 C -0.17 -1.69 5.71 -26.59 -0.15 -1.84 16 27 C 0.07 0.57 6.84 37.21 0.25 0.82 16 28 O -0.37 -3.42 9.06 -35.23 -0.32 -3.74 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.49 7.68 -51.93 -0.40 0.09 16 32 H 0.06 0.37 6.49 -51.93 -0.34 0.03 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.51 7.68 -51.93 -0.40 0.11 16 36 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 0.38 6.38 -51.92 -0.33 0.05 16 38 H 0.08 0.63 6.57 -51.93 -0.34 0.28 16 39 H 0.08 0.63 6.31 -51.93 -0.33 0.31 16 40 H 0.40 3.82 8.62 -40.82 -0.35 3.47 16 41 H 0.41 6.62 7.45 -40.82 -0.30 6.32 16 42 H 0.08 1.47 8.14 -51.92 -0.42 1.05 16 43 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 44 H 0.40 9.47 7.90 -40.82 -0.32 9.14 16 45 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 48 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 49 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 389.94 15.07 5.88 5.88 Total: -1.00 -31.42 389.94 -7.91 -39.33 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: -8.09 Total: 15.72 kcal Atomic # 6 Polarization: 12.91 SS G_CDS: -0.52 Total: 12.39 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: 0.00 Total: -58.46 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -0.15 Total: -30.36 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.42 -7.91 -39.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345735945.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.812 kcal (2) G-P(sol) polarization free energy of solvation -31.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds