Wall clock time and date at job start Fri Apr 10 2020 14:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47425 * 2 1 4 4 C 1.53002 * 109.47071 * 239.99894 * 2 1 3 5 5 C 1.53004 * 109.47150 * 119.99936 * 2 1 3 6 6 H 1.08992 * 109.49191 * 299.97298 * 5 2 1 7 7 C 1.53093 * 109.47891 * 179.97438 * 5 2 1 8 8 C 1.53180 * 109.15823 * 182.41039 * 7 5 2 9 9 H 1.09000 * 109.61762 * 297.06610 * 8 7 5 10 10 N 1.46500 * 109.54052 * 176.84875 * 8 7 5 11 11 C 1.34782 * 120.00016 * 155.44498 * 10 8 7 12 12 O 1.21589 * 119.99616 * 359.97438 * 11 10 8 13 13 N 1.34775 * 120.00074 * 180.02562 * 11 10 8 14 14 C 1.46499 * 120.00181 * 179.97438 * 13 11 10 15 15 C 1.50700 * 109.47257 * 179.97438 * 14 13 11 16 16 O 1.21293 * 119.99810 * 359.97438 * 15 14 13 17 17 N 1.34777 * 119.99675 * 180.27849 * 15 14 13 18 18 C 1.37102 * 119.99634 * 179.72687 * 17 15 14 19 19 H 1.08002 * 119.99868 * 359.97438 * 18 17 15 20 20 C 1.38945 * 119.99860 * 179.97438 * 18 17 15 21 21 N 1.31414 * 119.99894 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99956 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47031 * 60.00269 * 22 20 18 24 24 H 1.48504 * 109.46971 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47038 * 300.00246 * 22 20 18 26 26 C 1.53172 * 109.03875 * 56.98400 * 8 7 5 27 27 C 1.53093 * 109.16325 * 303.01587 * 26 8 7 28 28 O 1.42906 * 109.41195 * 57.61091 * 27 26 8 29 29 H 1.08997 * 109.46911 * 300.00322 * 1 2 3 30 30 H 1.09005 * 109.46808 * 60.00014 * 1 2 3 31 31 H 1.08997 * 109.47160 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46923 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.46665 * 300.00025 * 3 2 1 34 34 H 1.09001 * 109.46500 * 59.99631 * 3 2 1 35 35 H 1.08997 * 109.47431 * 300.00205 * 4 2 1 36 36 H 1.08998 * 109.46897 * 60.00167 * 4 2 1 37 37 H 1.09008 * 109.47034 * 179.97438 * 4 2 1 38 38 H 1.08999 * 109.52265 * 62.50729 * 7 5 2 39 39 H 1.09002 * 109.52381 * 302.31581 * 7 5 2 40 40 H 0.97002 * 120.00099 * 335.44152 * 10 8 7 41 41 H 0.97002 * 120.00040 * 359.97438 * 13 11 10 42 42 H 1.09009 * 109.46700 * 59.99666 * 14 13 11 43 43 H 1.08998 * 109.46827 * 300.00240 * 14 13 11 44 44 H 0.97001 * 120.00485 * 359.71840 * 17 15 14 45 45 H 0.97004 * 119.99542 * 179.97438 * 21 20 18 46 46 H 1.09005 * 109.52652 * 62.92488 * 26 8 7 47 47 H 1.08997 * 109.52455 * 183.10966 * 26 8 7 48 48 H 1.09000 * 109.48342 * 177.59143 * 27 26 8 49 49 H 1.08995 * 109.48060 * 297.62943 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 1 1.6773 -0.2074 2.1394 7 6 3.5710 -0.7219 1.2491 8 6 4.0735 -1.4975 2.4708 9 1 3.7526 -0.9928 3.3820 10 7 5.5364 -1.5678 2.4388 11 6 6.2281 -1.7388 3.5829 12 8 5.6378 -1.8343 4.6416 13 7 7.5740 -1.8030 3.5536 14 6 8.3258 -1.9883 4.7972 15 6 9.8009 -2.0269 4.4914 16 8 10.1863 -1.9114 3.3472 17 7 10.6916 -2.1958 5.4888 18 6 12.0334 -2.2364 5.2099 19 1 12.3765 -2.1335 4.1911 20 6 12.9516 -2.4101 6.2381 21 7 12.5340 -2.5358 7.4778 22 14 14.7797 -2.4662 5.8582 23 1 15.1921 -1.1900 5.2206 24 1 15.5415 -2.6594 7.1182 25 1 15.0587 -3.5943 4.9336 26 6 3.4916 -2.9140 2.4374 27 6 1.9637 -2.8287 2.3916 28 8 1.5645 -2.0689 1.2490 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1392 37 1 3.1301 -0.7209 -1.2495 38 1 3.9357 0.3043 1.2939 39 1 3.9350 -1.1995 0.3394 40 1 6.0073 -1.4913 1.5942 41 1 8.0449 -1.7265 2.7090 42 1 8.0275 -2.9263 5.2657 43 1 8.1163 -1.1609 5.4751 44 1 10.3834 -2.2885 6.4038 45 1 13.1751 -2.6574 8.1955 46 1 3.8540 -3.4359 1.5517 47 1 3.7995 -3.4555 3.3318 48 1 1.5454 -3.8330 2.3245 49 1 1.5995 -2.3427 3.2966 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345735945.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:33 Heat of formation + Delta-G solvation = -156.763155 kcal Electronic energy + Delta-G solvation = -28189.185601 eV Core-core repulsion = 24149.537290 eV Total energy + Delta-G solvation = -4039.648311 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.55980 -40.70568 -39.93308 -37.36931 -36.39496 -36.11956 -35.26916 -33.38991 -32.52243 -31.21504 -29.13353 -28.12411 -28.04864 -26.51591 -25.22125 -24.60243 -22.06551 -21.56778 -21.33776 -20.15274 -19.81758 -19.49143 -17.73148 -17.42580 -17.16096 -16.84782 -16.76486 -16.51999 -16.01025 -15.83041 -15.76344 -15.35680 -15.22809 -15.11797 -14.90978 -14.59445 -14.14558 -14.00334 -13.93882 -13.60236 -13.53659 -13.12829 -12.93348 -12.89385 -12.60468 -12.59091 -12.47030 -12.30312 -12.13745 -12.09654 -11.82342 -11.60987 -11.56250 -11.50742 -11.43966 -11.06854 -10.56335 -10.51461 -10.40736 -10.10453 -9.84048 -8.50832 -6.01229 1.38178 1.42313 1.51915 1.58923 1.89706 2.10108 2.28580 2.78668 3.02641 3.16269 3.29053 3.57213 3.77807 3.80826 4.03978 4.07913 4.08803 4.20951 4.26681 4.29636 4.39744 4.43600 4.45673 4.60175 4.64320 4.71878 4.79373 4.85901 4.89338 4.98013 5.02132 5.05327 5.11887 5.14059 5.20269 5.23884 5.30776 5.37564 5.38501 5.50512 5.54083 5.57507 5.90988 5.95318 6.30175 6.47956 7.01867 7.03268 7.42499 7.52532 7.94235 8.65749 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.031139 B = 0.001903 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.983099 B =14707.474772 C =15137.882335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.058 4.058 3 C -0.144 4.144 4 C -0.138 4.138 5 C 0.105 3.895 6 H 0.058 0.942 7 C -0.151 4.151 8 C 0.164 3.836 9 H 0.070 0.930 10 N -0.727 5.727 11 C 0.705 3.295 12 O -0.630 6.630 13 N -0.724 5.724 14 C 0.142 3.858 15 C 0.433 3.567 16 O -0.624 6.624 17 N -0.559 5.559 18 C -0.338 4.338 19 H 0.087 0.913 20 C -0.011 4.011 21 N -0.916 5.916 22 Si 0.998 3.002 23 H -0.270 1.270 24 H -0.272 1.272 25 H -0.270 1.270 26 C -0.162 4.162 27 C 0.068 3.932 28 O -0.381 6.381 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.409 0.591 41 H 0.410 0.590 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.399 0.601 45 H 0.280 0.720 46 H 0.075 0.925 47 H 0.060 0.940 48 H 0.109 0.891 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.486 4.407 -13.884 27.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.058 4.058 3 C -0.202 4.202 4 C -0.195 4.195 5 C 0.046 3.954 6 H 0.076 0.924 7 C -0.189 4.189 8 C 0.059 3.941 9 H 0.088 0.912 10 N -0.382 5.382 11 C 0.405 3.595 12 O -0.512 6.512 13 N -0.382 5.382 14 C 0.014 3.986 15 C 0.220 3.780 16 O -0.512 6.512 17 N -0.194 5.194 18 C -0.467 4.467 19 H 0.105 0.895 20 C -0.212 4.212 21 N -0.556 5.556 22 Si 0.821 3.179 23 H -0.195 1.195 24 H -0.197 1.197 25 H -0.195 1.195 26 C -0.202 4.202 27 C -0.009 4.009 28 O -0.300 6.300 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.245 0.755 41 H 0.248 0.752 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.233 0.767 45 H 0.089 0.911 46 H 0.094 0.906 47 H 0.079 0.921 48 H 0.127 0.873 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -23.750 4.299 -13.621 27.714 hybrid contribution 1.522 -0.132 0.297 1.557 sum -22.227 4.166 -13.324 26.248 Atomic orbital electron populations 1.21787 0.93765 1.01935 1.01875 1.20549 0.96434 0.95212 0.93630 1.21944 1.01567 0.93979 1.02674 1.21850 1.01059 1.00295 0.96326 1.22120 0.91484 0.83192 0.98558 0.92417 1.22603 0.96984 1.01792 0.97558 1.20864 0.77707 0.96090 0.99486 0.91226 1.45039 1.07050 1.78314 1.07840 1.15964 0.81215 0.77685 0.84646 1.90877 1.69547 1.59972 1.30793 1.44699 1.04498 1.78024 1.10949 1.20571 0.87478 1.03599 0.86982 1.20413 0.88453 0.83523 0.85570 1.90465 1.80973 1.57861 1.21916 1.41834 1.06033 1.62428 1.09153 1.19704 0.82052 1.49524 0.95440 0.89529 1.26143 1.04960 0.95768 0.94334 1.69680 1.37555 1.48358 0.99968 0.84918 0.76144 0.79067 0.77792 1.19464 1.19653 1.19507 1.22578 0.97413 0.97375 1.02786 1.22553 0.92459 0.97250 0.88642 1.87913 1.74605 1.23574 1.43920 0.92789 0.91867 0.92777 0.91894 0.91246 0.92327 0.92864 0.92093 0.92287 0.89084 0.89224 0.75453 0.75234 0.89165 0.89096 0.76699 0.91068 0.90581 0.92113 0.87291 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.33 71.98 0.60 -1.02 16 2 C -0.06 -0.70 0.63 -52.18 -0.03 -0.73 16 3 C -0.14 -1.44 8.12 71.98 0.58 -0.86 16 4 C -0.14 -1.66 7.98 71.98 0.57 -1.08 16 5 C 0.10 1.52 1.91 30.63 0.06 1.58 16 6 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 7 C -0.15 -2.19 4.17 30.69 0.13 -2.06 16 8 C 0.16 3.28 2.54 45.11 0.11 3.40 16 9 H 0.07 1.69 7.59 -2.39 -0.02 1.67 16 10 N -0.73 -16.42 5.09 -457.24 -2.33 -18.75 16 11 C 0.71 22.14 8.53 179.05 1.53 23.67 16 12 O -0.63 -24.08 16.01 -3.99 -0.06 -24.14 16 13 N -0.72 -23.75 5.53 -482.29 -2.67 -26.42 16 14 C 0.14 5.24 6.15 85.63 0.53 5.77 16 15 C 0.43 19.96 7.85 87.66 0.69 20.65 16 16 O -0.62 -32.02 15.24 -3.07 -0.05 -32.07 16 17 N -0.56 -28.06 5.29 -306.98 -1.62 -29.68 16 18 C -0.34 -18.57 9.68 84.04 0.81 -17.76 16 19 H 0.09 4.98 7.16 -2.91 -0.02 4.96 16 20 C -0.01 -0.59 5.50 84.92 0.47 -0.12 16 21 N -0.92 -48.61 13.05 21.66 0.28 -48.33 16 22 Si 1.00 41.61 29.55 68.60 2.03 43.64 16 23 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 24 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 25 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 26 C -0.16 -3.16 5.71 30.68 0.18 -2.98 16 27 C 0.07 1.11 6.84 72.01 0.49 1.60 16 28 O -0.38 -6.50 9.06 -148.98 -1.35 -7.85 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.05 0.76 7.68 -2.39 -0.02 0.74 16 32 H 0.06 0.61 6.49 -2.39 -0.02 0.60 16 33 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.05 0.77 7.68 -2.39 -0.02 0.75 16 36 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.06 0.67 6.38 -2.38 -0.02 0.66 16 38 H 0.09 1.19 6.57 -2.39 -0.02 1.18 16 39 H 0.09 1.20 6.31 -2.39 -0.02 1.18 16 40 H 0.41 7.21 8.62 -92.71 -0.80 6.42 16 41 H 0.41 13.03 7.45 -92.71 -0.69 12.33 16 42 H 0.09 3.20 8.14 -2.38 -0.02 3.19 16 43 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 44 H 0.40 19.27 7.90 -92.71 -0.73 18.54 16 45 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 46 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 47 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 49 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -66.52 389.94 -0.29 -66.81 By element: Atomic # 1 Polarization: 47.96 SS G_CDS: -1.24 Total: 46.72 kcal Atomic # 6 Polarization: 23.34 SS G_CDS: 6.72 Total: 30.06 kcal Atomic # 7 Polarization: -116.84 SS G_CDS: -6.34 Total: -123.18 kcal Atomic # 8 Polarization: -62.60 SS G_CDS: -1.46 Total: -64.06 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Total: -66.52 -0.29 -66.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345735945.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.950 kcal (2) G-P(sol) polarization free energy of solvation -66.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds