Wall clock time and date at job start Fri Apr 10 2020 14:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47086 * 2 1 4 4 C 1.53008 * 109.47423 * 239.99979 * 2 1 3 5 5 C 1.53003 * 109.47441 * 119.99762 * 2 1 3 6 6 H 1.08996 * 109.47730 * 299.98155 * 5 2 1 7 7 C 1.53085 * 109.48191 * 179.97438 * 5 2 1 8 8 C 1.53184 * 109.16283 * 182.40889 * 7 5 2 9 9 H 1.08997 * 109.61535 * 176.89454 * 8 7 5 10 10 N 1.46500 * 109.54346 * 297.11599 * 8 7 5 11 11 C 1.34772 * 120.00126 * 204.55207 * 10 8 7 12 12 O 1.21592 * 119.99810 * 0.02562 * 11 10 8 13 13 N 1.34780 * 120.00308 * 180.02562 * 11 10 8 14 14 C 1.46491 * 120.00091 * 179.97438 * 13 11 10 15 15 C 1.50702 * 109.46957 * 179.97438 * 14 13 11 16 16 O 1.21293 * 120.00255 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99928 * 179.72354 * 15 14 13 18 18 C 1.37101 * 120.00327 * 180.27606 * 17 15 14 19 19 H 1.08001 * 119.99426 * 0.02562 * 18 17 15 20 20 C 1.38942 * 120.00412 * 180.02562 * 18 17 15 21 21 N 1.31414 * 120.00005 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00325 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46636 * 60.00069 * 22 20 18 24 24 H 1.48498 * 109.47594 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47124 * 300.00305 * 22 20 18 26 26 C 1.53183 * 109.03384 * 56.98319 * 8 7 5 27 27 C 1.53088 * 109.16289 * 303.01949 * 26 8 7 28 28 O 1.42906 * 109.47519 * 59.99945 * 5 2 1 29 29 H 1.08998 * 109.47429 * 300.00256 * 1 2 3 30 30 H 1.09001 * 109.47348 * 60.00333 * 1 2 3 31 31 H 1.09008 * 109.47215 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47173 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.47205 * 299.99825 * 3 2 1 34 34 H 1.08994 * 109.47127 * 60.00116 * 3 2 1 35 35 H 1.08996 * 109.46951 * 300.00095 * 4 2 1 36 36 H 1.08998 * 109.46650 * 60.00145 * 4 2 1 37 37 H 1.09000 * 109.47055 * 179.97438 * 4 2 1 38 38 H 1.08999 * 109.51935 * 62.51017 * 7 5 2 39 39 H 1.08998 * 109.52627 * 302.31722 * 7 5 2 40 40 H 0.97005 * 120.00111 * 24.55713 * 10 8 7 41 41 H 0.97003 * 119.99349 * 0.02562 * 13 11 10 42 42 H 1.09004 * 109.47166 * 60.00164 * 14 13 11 43 43 H 1.08994 * 109.47507 * 299.99870 * 14 13 11 44 44 H 0.97000 * 120.00317 * 0.28382 * 17 15 14 45 45 H 0.96996 * 120.00330 * 179.97438 * 21 20 18 46 46 H 1.08998 * 109.51833 * 62.92353 * 26 8 7 47 47 H 1.08997 * 109.51988 * 183.11348 * 26 8 7 48 48 H 1.08999 * 109.48287 * 177.59118 * 27 26 8 49 49 H 1.08999 * 109.48126 * 297.62857 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7212 1.2493 6 1 1.6770 -0.2072 2.1393 7 6 3.5709 -0.7219 1.2491 8 6 4.0735 -1.4974 2.4708 9 1 5.1620 -1.5497 2.4486 10 7 3.6404 -0.8183 3.6945 11 6 4.3300 -0.9885 4.8398 12 8 5.3120 -1.7054 4.8573 13 7 3.9313 -0.3642 5.9658 14 6 4.6806 -0.5497 7.2108 15 6 4.0329 0.2510 8.3110 16 8 3.0425 0.9113 8.0781 17 7 4.5507 0.2286 9.5552 18 6 3.9582 0.9526 10.5574 19 1 3.0763 1.5405 10.3499 20 6 4.4922 0.9300 11.8399 21 7 5.5656 0.2150 12.0922 22 14 3.6853 1.9169 13.2053 23 1 2.2867 1.4535 13.3908 24 1 4.4424 1.7255 14.4684 25 1 3.6856 3.3568 12.8419 26 6 3.4915 -2.9139 2.4374 27 6 1.9637 -2.8286 2.3916 28 8 1.5637 -2.0686 1.2494 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6767 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7208 -1.2494 38 1 3.9355 0.3044 1.2939 39 1 3.9349 -1.1994 0.3395 40 1 2.8571 -0.2462 3.6805 41 1 3.1476 0.2073 5.9519 42 1 5.7071 -0.2105 7.0711 43 1 4.6805 -1.6056 7.4811 44 1 5.3426 -0.2996 9.7416 45 1 5.9386 0.1995 12.9874 46 1 3.8539 -3.4357 1.5517 47 1 3.7995 -3.4554 3.3319 48 1 1.5454 -3.8329 2.3245 49 1 1.5995 -2.3426 3.2967 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345735948.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:38 Heat of formation + Delta-G solvation = -131.664344 kcal Electronic energy + Delta-G solvation = -28677.902377 eV Core-core repulsion = 24639.342432 eV Total energy + Delta-G solvation = -4038.559945 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.78980 -39.44630 -38.19045 -36.68865 -35.20033 -34.38820 -33.66186 -31.56801 -31.27610 -30.51700 -27.68942 -27.60483 -27.29245 -25.04696 -24.34582 -23.88075 -21.31717 -20.02520 -19.59374 -19.09943 -18.40000 -17.97988 -16.51313 -16.38583 -16.24636 -15.61150 -15.52007 -15.08979 -14.77976 -14.69887 -14.51809 -14.19357 -14.04425 -13.98577 -13.75905 -13.52057 -13.26530 -12.88235 -12.71392 -12.28742 -12.19655 -12.15972 -11.99681 -11.94176 -11.85040 -11.63519 -11.42064 -11.20998 -11.11096 -10.98462 -10.80978 -10.51495 -10.36787 -10.32309 -10.04298 -9.65454 -9.63294 -9.16145 -8.63576 -8.63132 -8.10694 -6.51877 -3.94082 2.78379 3.13084 3.21001 3.24902 3.36996 3.47773 3.74444 4.08002 4.24263 4.38317 4.41177 4.58853 4.67814 4.72852 4.83311 4.87861 4.89191 4.95228 5.13030 5.16684 5.29287 5.32072 5.36242 5.39486 5.51796 5.57164 5.63631 5.65800 5.70758 5.73214 5.77618 5.81081 5.89375 5.92940 5.93727 5.99652 6.07416 6.10225 6.12938 6.51525 6.73748 7.01914 7.05997 7.45172 7.91536 8.20792 8.44530 8.77551 9.03934 9.38811 9.86712 10.64920 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.022240 B = 0.002192 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.678171 B =12769.165401 C =13379.589197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.060 4.060 3 C -0.146 4.146 4 C -0.139 4.139 5 C 0.101 3.899 6 H 0.055 0.945 7 C -0.161 4.161 8 C 0.164 3.836 9 H 0.093 0.907 10 N -0.745 5.745 11 C 0.705 3.295 12 O -0.597 6.597 13 N -0.725 5.725 14 C 0.129 3.871 15 C 0.428 3.572 16 O -0.598 6.598 17 N -0.549 5.549 18 C -0.305 4.305 19 H 0.105 0.895 20 C 0.026 3.974 21 N -0.895 5.895 22 Si 0.934 3.066 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.273 1.273 26 C -0.167 4.167 27 C 0.063 3.937 28 O -0.374 6.374 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.393 0.607 41 H 0.406 0.594 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.396 0.604 45 H 0.275 0.725 46 H 0.078 0.922 47 H 0.081 0.919 48 H 0.093 0.907 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.571 -2.968 -24.423 25.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.060 4.060 3 C -0.203 4.203 4 C -0.197 4.197 5 C 0.043 3.957 6 H 0.073 0.927 7 C -0.199 4.199 8 C 0.059 3.941 9 H 0.111 0.889 10 N -0.402 5.402 11 C 0.405 3.595 12 O -0.475 6.475 13 N -0.382 5.382 14 C 0.000 4.000 15 C 0.214 3.786 16 O -0.485 6.485 17 N -0.184 5.184 18 C -0.435 4.435 19 H 0.122 0.878 20 C -0.177 4.177 21 N -0.535 5.535 22 Si 0.761 3.239 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.198 1.198 26 C -0.206 4.206 27 C -0.014 4.014 28 O -0.293 6.293 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.101 0.899 39 H 0.109 0.891 40 H 0.228 0.772 41 H 0.243 0.757 42 H 0.100 0.900 43 H 0.100 0.900 44 H 0.230 0.770 45 H 0.085 0.915 46 H 0.097 0.903 47 H 0.100 0.900 48 H 0.111 0.889 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.303 -3.285 -24.471 25.254 hybrid contribution -0.334 0.726 1.218 1.457 sum -5.637 -2.559 -23.253 24.063 Atomic orbital electron populations 1.21812 0.93923 1.02479 1.01411 1.20534 0.96344 0.94794 0.94300 1.21952 1.01391 0.94690 1.02288 1.21863 1.00853 1.00906 0.96035 1.22057 0.92428 0.83604 0.97613 0.92673 1.22648 0.96842 1.01992 0.98454 1.20773 1.00239 0.90855 0.82274 0.88934 1.45229 1.33001 1.53405 1.08584 1.15869 0.82786 0.80605 0.80256 1.90903 1.28299 1.43274 1.85071 1.44790 1.33639 1.52002 1.07751 1.20776 0.95514 1.00615 0.83051 1.19766 0.87500 0.87170 0.84178 1.90489 1.28327 1.47390 1.82313 1.41785 1.27281 1.42412 1.06886 1.19672 1.11458 1.24854 0.87505 0.87758 1.25326 0.96159 0.97522 0.98716 1.69606 1.21092 1.39822 1.22952 0.85870 0.78998 0.79836 0.79240 1.19779 1.20849 1.19787 1.22588 0.96695 0.97680 1.03639 1.22531 0.94037 0.96237 0.88574 1.87907 1.74510 1.22956 1.43880 0.92822 0.92817 0.91750 0.92097 0.92076 0.92336 0.91739 0.92951 0.92551 0.89886 0.89107 0.77244 0.75684 0.90048 0.90046 0.77010 0.91527 0.90321 0.90039 0.88936 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 8.33 37.15 0.31 -0.71 16 2 C -0.06 -0.43 0.63 -154.51 -0.10 -0.52 16 3 C -0.15 -0.93 8.12 37.16 0.30 -0.62 16 4 C -0.14 -0.95 7.98 37.16 0.30 -0.66 16 5 C 0.10 0.82 1.73 -26.69 -0.05 0.78 16 6 H 0.06 0.47 6.72 -51.93 -0.35 0.12 16 7 C -0.16 -1.28 4.35 -26.59 -0.12 -1.39 16 8 C 0.16 1.68 2.81 -67.74 -0.19 1.49 16 9 H 0.09 1.10 7.59 -51.93 -0.39 0.70 16 10 N -0.75 -8.69 4.41 -58.49 -0.26 -8.95 16 11 C 0.71 11.15 8.53 -86.92 -0.74 10.41 16 12 O -0.60 -11.35 16.01 5.28 0.08 -11.27 16 13 N -0.72 -12.04 5.53 -66.42 -0.37 -12.41 16 14 C 0.13 2.39 6.15 -5.20 -0.03 2.36 16 15 C 0.43 9.79 7.85 -10.98 -0.09 9.71 16 16 O -0.60 -15.22 15.24 5.55 0.08 -15.13 16 17 N -0.55 -13.60 5.29 -10.96 -0.06 -13.65 16 18 C -0.31 -8.28 9.68 -14.93 -0.14 -8.43 16 19 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 20 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 21 N -0.89 -23.86 13.05 55.50 0.72 -23.14 16 22 Si 0.93 20.50 29.55 -169.99 -5.02 15.48 16 23 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 26 C -0.17 -1.64 5.80 -26.59 -0.15 -1.80 16 27 C 0.06 0.59 6.68 37.20 0.25 0.83 16 28 O -0.37 -3.55 9.06 -35.23 -0.32 -3.87 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.53 7.68 -51.92 -0.40 0.13 16 32 H 0.06 0.37 6.49 -51.93 -0.34 0.03 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.50 7.68 -51.93 -0.40 0.10 16 36 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 0.36 6.38 -51.93 -0.33 0.03 16 38 H 0.08 0.62 6.57 -51.93 -0.34 0.28 16 39 H 0.09 0.66 6.31 -51.93 -0.33 0.34 16 40 H 0.39 3.92 7.09 -40.82 -0.29 3.63 16 41 H 0.41 6.59 7.45 -40.82 -0.30 6.28 16 42 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 43 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 44 H 0.40 9.44 7.90 -40.82 -0.32 9.12 16 45 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 46 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.05 0.51 7.75 -51.93 -0.40 0.11 16 LS Contribution 386.10 15.07 5.82 5.82 Total: -1.00 -31.10 386.10 -7.80 -38.90 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: -7.93 Total: 16.19 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: -0.55 Total: 12.02 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: 0.04 Total: -58.14 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -0.15 Total: -30.27 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.10 -7.80 -38.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345735948.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.764 kcal (2) G-P(sol) polarization free energy of solvation -31.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds