Wall clock time and date at job start Fri Apr 10 2020 14:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47376 * 2 1 4 4 C 1.53001 * 109.47276 * 239.99914 * 2 1 3 5 5 C 1.52994 * 109.47137 * 120.00307 * 2 1 3 6 6 H 1.09005 * 109.48564 * 180.02562 * 5 2 1 7 7 C 1.53098 * 109.48995 * 300.05193 * 5 2 1 8 8 C 1.53177 * 109.16516 * 177.59780 * 7 5 2 9 9 H 1.09002 * 109.61361 * 62.92514 * 8 7 5 10 10 N 1.46494 * 109.54464 * 183.14926 * 8 7 5 11 11 C 1.34778 * 120.00180 * 204.55511 * 10 8 7 12 12 O 1.21589 * 119.99662 * 359.97438 * 11 10 8 13 13 N 1.34772 * 119.99867 * 180.02562 * 11 10 8 14 14 C 1.46509 * 119.99923 * 179.97438 * 13 11 10 15 15 C 1.50698 * 109.47002 * 179.97438 * 14 13 11 16 16 O 1.21293 * 120.00006 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99538 * 179.97438 * 15 14 13 18 18 C 1.37104 * 119.99773 * 179.72591 * 17 15 14 19 19 H 1.08002 * 119.99671 * 0.27660 * 18 17 15 20 20 C 1.38950 * 120.00030 * 180.27703 * 18 17 15 21 21 N 1.31414 * 119.99926 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99969 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47459 * 59.99812 * 22 20 18 24 24 H 1.48502 * 109.47317 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47211 * 300.00250 * 22 20 18 26 26 C 1.53184 * 109.03744 * 303.02088 * 8 7 5 27 27 C 1.53097 * 109.16403 * 56.97642 * 26 8 7 28 28 O 1.42901 * 109.41473 * 302.39637 * 27 26 8 29 29 H 1.08993 * 109.46963 * 299.99832 * 1 2 3 30 30 H 1.09000 * 109.46854 * 59.99703 * 1 2 3 31 31 H 1.08998 * 109.47158 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46995 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.46905 * 300.00150 * 3 2 1 34 34 H 1.09005 * 109.46942 * 59.99809 * 3 2 1 35 35 H 1.08996 * 109.47116 * 300.00747 * 4 2 1 36 36 H 1.09007 * 109.46551 * 60.00177 * 4 2 1 37 37 H 1.08996 * 109.47436 * 179.97438 * 4 2 1 38 38 H 1.08996 * 109.52186 * 57.69169 * 7 5 2 39 39 H 1.08995 * 109.51973 * 297.49850 * 7 5 2 40 40 H 0.97003 * 119.99886 * 24.56238 * 10 8 7 41 41 H 0.97003 * 120.00202 * 359.97438 * 13 11 10 42 42 H 1.09003 * 109.46564 * 59.99951 * 14 13 11 43 43 H 1.08993 * 109.46901 * 300.00286 * 14 13 11 44 44 H 0.97001 * 120.00485 * 0.02562 * 17 15 14 45 45 H 0.96999 * 119.99863 * 180.02562 * 21 20 18 46 46 H 1.08990 * 109.52331 * 176.88748 * 26 8 7 47 47 H 1.09001 * 109.51771 * 297.01328 * 26 8 7 48 48 H 1.08996 * 109.47618 * 62.37872 * 27 26 8 49 49 H 1.08994 * 109.47972 * 182.41409 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2492 6 1 3.1300 -0.7210 1.2496 7 6 1.5288 -0.0007 2.4995 8 6 1.9934 -0.7629 3.7444 9 1 3.0824 -0.7562 3.7923 10 7 1.4462 -0.1232 4.9433 11 6 2.0691 -0.2700 6.1294 12 8 3.0851 -0.9337 6.2044 13 7 1.5654 0.3181 7.2324 14 6 2.2422 0.1581 8.5219 15 6 1.4824 0.9093 9.5847 16 8 0.4744 1.5180 9.2937 17 7 1.9224 0.9038 10.8586 18 6 1.2343 1.5918 11.8244 19 1 0.3372 2.1344 11.5652 20 6 1.6911 1.5909 13.1367 21 7 2.7830 0.9311 13.4519 22 14 0.7532 2.5277 14.4527 23 1 -0.6278 1.9910 14.5533 24 1 1.4423 2.3701 15.7587 25 1 0.6996 3.9674 14.0924 26 6 1.4931 -2.2083 3.6610 27 6 2.0056 -2.8436 2.3658 28 8 1.5638 -2.0687 1.2494 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6767 -0.2073 -2.1392 37 1 3.1300 -0.7209 -1.2495 38 1 0.4396 0.0349 2.4797 39 1 1.9271 1.0136 2.5237 40 1 0.6354 0.4060 4.8835 41 1 0.7546 0.8474 7.1726 42 1 3.2555 0.5539 8.4519 43 1 2.2824 -0.8995 8.7823 44 1 2.7283 0.4167 11.0913 45 1 3.1016 0.9302 14.3681 46 1 1.8657 -2.7726 4.5158 47 1 0.4031 -2.2172 3.6657 48 1 3.0951 -2.8711 2.3808 49 1 1.6173 -3.8584 2.2803 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345735951.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:42 Heat of formation + Delta-G solvation = -134.142297 kcal Electronic energy + Delta-G solvation = -28188.140072 eV Core-core repulsion = 24149.472675 eV Total energy + Delta-G solvation = -4038.667397 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.60187 -39.55174 -38.20777 -36.69632 -35.34616 -34.38652 -33.65543 -31.62039 -31.30361 -30.52693 -27.73795 -27.60296 -27.35567 -24.93057 -24.14498 -23.83283 -20.90042 -20.63108 -19.60730 -19.18301 -18.39807 -17.95614 -16.77350 -16.43821 -15.87259 -15.57891 -15.45950 -15.11095 -14.87621 -14.68648 -14.44721 -14.30812 -14.08573 -13.97158 -13.87743 -13.54856 -13.32305 -13.20831 -12.57254 -12.37629 -12.18422 -12.06026 -11.97133 -11.92017 -11.65069 -11.63311 -11.38812 -11.13779 -11.09605 -11.03017 -10.83592 -10.51273 -10.45129 -10.32201 -10.14083 -9.73835 -9.63030 -9.16720 -8.63196 -8.62453 -8.10390 -6.51634 -3.93788 2.76826 3.13303 3.21178 3.25109 3.37207 3.44085 3.74772 4.07779 4.23695 4.34943 4.43420 4.55907 4.64693 4.74936 4.80569 4.89523 4.93103 4.97784 5.10877 5.16924 5.25879 5.28566 5.30187 5.36274 5.46107 5.49422 5.55386 5.63234 5.68066 5.70385 5.77259 5.81635 5.87360 5.91840 5.99718 6.02155 6.07361 6.07979 6.12022 6.51331 6.74462 6.97626 7.09177 7.45434 7.91846 8.22700 8.44859 8.78365 9.04190 9.39108 9.87045 10.65151 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.031101 B = 0.001904 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.074247 B =14705.542591 C =15137.908784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.059 4.059 3 C -0.146 4.146 4 C -0.138 4.138 5 C 0.107 3.893 6 H 0.060 0.940 7 C -0.162 4.162 8 C 0.166 3.834 9 H 0.087 0.913 10 N -0.744 5.744 11 C 0.705 3.295 12 O -0.598 6.598 13 N -0.724 5.724 14 C 0.129 3.871 15 C 0.428 3.572 16 O -0.598 6.598 17 N -0.549 5.549 18 C -0.306 4.306 19 H 0.105 0.895 20 C 0.026 3.974 21 N -0.895 5.895 22 Si 0.934 3.066 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.273 1.273 26 C -0.168 4.168 27 C 0.066 3.934 28 O -0.375 6.375 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.396 0.604 41 H 0.407 0.593 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.396 0.604 45 H 0.275 0.725 46 H 0.081 0.919 47 H 0.072 0.928 48 H 0.052 0.948 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.970 -3.916 -26.446 26.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.060 4.060 3 C -0.203 4.203 4 C -0.195 4.195 5 C 0.048 3.952 6 H 0.078 0.922 7 C -0.200 4.200 8 C 0.060 3.940 9 H 0.106 0.894 10 N -0.399 5.399 11 C 0.405 3.595 12 O -0.477 6.477 13 N -0.382 5.382 14 C 0.000 4.000 15 C 0.214 3.786 16 O -0.485 6.485 17 N -0.184 5.184 18 C -0.435 4.435 19 H 0.123 0.877 20 C -0.177 4.177 21 N -0.535 5.535 22 Si 0.761 3.239 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.198 1.198 26 C -0.207 4.207 27 C -0.012 4.012 28 O -0.294 6.294 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.230 0.770 41 H 0.244 0.756 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.230 0.770 45 H 0.085 0.915 46 H 0.099 0.901 47 H 0.091 0.909 48 H 0.070 0.930 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.705 -4.205 -26.454 26.796 hybrid contribution -0.477 0.709 1.232 1.499 sum -1.181 -3.496 -25.223 25.491 Atomic orbital electron populations 1.21869 0.93881 1.02540 1.01439 1.20530 0.96626 0.94831 0.93968 1.21948 1.01209 0.94749 1.02379 1.21807 1.00667 1.00941 0.96128 1.22022 0.97303 0.82289 0.93543 0.92239 1.22660 1.02958 1.00343 0.94022 1.20739 0.99208 0.91226 0.82812 0.89445 1.45118 1.30806 1.57131 1.06880 1.15873 0.83128 0.80211 0.80319 1.90897 1.25877 1.45586 1.85346 1.44788 1.31283 1.55585 1.06500 1.20779 0.96106 1.00975 0.82102 1.19766 0.87913 0.86943 0.83988 1.90489 1.27706 1.49088 1.81233 1.41784 1.25769 1.44910 1.05899 1.19678 1.09033 1.27623 0.87178 0.87747 1.25329 0.96458 0.97491 0.98456 1.69608 1.21857 1.41291 1.20703 0.85866 0.79259 0.79768 0.79020 1.19790 1.20851 1.19795 1.22654 1.02125 0.96917 0.99019 1.22537 0.98694 0.94977 0.84948 1.87904 1.74155 1.22276 1.45017 0.92494 0.92918 0.91725 0.92435 0.92047 0.92041 0.91716 0.92782 0.92908 0.90002 0.89951 0.77017 0.75617 0.90052 0.90054 0.77008 0.91534 0.90060 0.90916 0.92983 0.88616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 7.98 37.16 0.30 -0.67 16 2 C -0.06 -0.41 0.63 -154.51 -0.10 -0.51 16 3 C -0.15 -0.88 8.12 37.16 0.30 -0.57 16 4 C -0.14 -0.92 8.33 37.16 0.31 -0.61 16 5 C 0.11 0.85 1.90 -26.68 -0.05 0.80 16 6 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 7 C -0.16 -1.30 4.17 -26.59 -0.11 -1.41 16 8 C 0.17 1.74 2.54 -67.75 -0.17 1.57 16 9 H 0.09 1.07 7.59 -51.93 -0.39 0.68 16 10 N -0.74 -8.81 5.09 -58.50 -0.30 -9.11 16 11 C 0.71 11.32 8.53 -86.92 -0.74 10.58 16 12 O -0.60 -11.50 16.01 5.29 0.08 -11.42 16 13 N -0.72 -12.14 5.53 -66.41 -0.37 -12.51 16 14 C 0.13 2.40 6.15 -5.19 -0.03 2.37 16 15 C 0.43 9.84 7.85 -10.99 -0.09 9.75 16 16 O -0.60 -15.28 15.24 5.55 0.08 -15.20 16 17 N -0.55 -13.63 5.29 -10.96 -0.06 -13.69 16 18 C -0.31 -8.31 9.68 -14.93 -0.14 -8.45 16 19 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 20 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 21 N -0.89 -23.88 13.05 55.50 0.72 -23.15 16 22 Si 0.93 20.53 29.55 -169.99 -5.02 15.50 16 23 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 26 C -0.17 -1.69 5.71 -26.59 -0.15 -1.84 16 27 C 0.07 0.57 6.84 37.21 0.25 0.82 16 28 O -0.37 -3.42 9.06 -35.23 -0.32 -3.74 16 29 H 0.06 0.38 6.38 -51.93 -0.33 0.05 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.51 7.68 -51.93 -0.40 0.11 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.37 6.49 -51.93 -0.34 0.03 16 35 H 0.06 0.49 7.68 -51.93 -0.40 0.09 16 36 H 0.05 0.32 8.14 -51.92 -0.42 -0.10 16 37 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.08 0.63 6.31 -51.93 -0.33 0.31 16 39 H 0.08 0.63 6.57 -51.93 -0.34 0.28 16 40 H 0.40 3.82 8.62 -40.82 -0.35 3.47 16 41 H 0.41 6.62 7.45 -40.82 -0.30 6.32 16 42 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 43 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 44 H 0.40 9.47 7.90 -40.82 -0.32 9.14 16 45 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 46 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 47 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 49 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 389.94 15.07 5.88 5.88 Total: -1.00 -31.42 389.94 -7.91 -39.33 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: -8.09 Total: 15.72 kcal Atomic # 6 Polarization: 12.91 SS G_CDS: -0.52 Total: 12.39 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: 0.00 Total: -58.46 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -0.15 Total: -30.36 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.42 -7.91 -39.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345735951.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.811 kcal (2) G-P(sol) polarization free energy of solvation -31.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds