Wall clock time and date at job start Fri Apr 10 2020 14:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47376 * 2 1 4 4 C 1.53001 * 109.47276 * 239.99914 * 2 1 3 5 5 C 1.52994 * 109.47137 * 120.00307 * 2 1 3 6 6 H 1.09005 * 109.48564 * 180.02562 * 5 2 1 7 7 C 1.53098 * 109.48995 * 300.05193 * 5 2 1 8 8 C 1.53177 * 109.16516 * 177.59780 * 7 5 2 9 9 H 1.09002 * 109.61361 * 62.92514 * 8 7 5 10 10 N 1.46494 * 109.54464 * 183.14926 * 8 7 5 11 11 C 1.34778 * 120.00180 * 204.55511 * 10 8 7 12 12 O 1.21589 * 119.99662 * 359.97438 * 11 10 8 13 13 N 1.34772 * 119.99867 * 180.02562 * 11 10 8 14 14 C 1.46509 * 119.99923 * 179.97438 * 13 11 10 15 15 C 1.50698 * 109.47002 * 179.97438 * 14 13 11 16 16 O 1.21293 * 120.00006 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99538 * 179.97438 * 15 14 13 18 18 C 1.37104 * 119.99773 * 179.72591 * 17 15 14 19 19 H 1.08002 * 119.99671 * 0.27660 * 18 17 15 20 20 C 1.38950 * 120.00030 * 180.27703 * 18 17 15 21 21 N 1.31414 * 119.99926 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99969 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47459 * 59.99812 * 22 20 18 24 24 H 1.48502 * 109.47317 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47211 * 300.00250 * 22 20 18 26 26 C 1.53184 * 109.03744 * 303.02088 * 8 7 5 27 27 C 1.53097 * 109.16403 * 56.97642 * 26 8 7 28 28 O 1.42901 * 109.41473 * 302.39637 * 27 26 8 29 29 H 1.08993 * 109.46963 * 299.99832 * 1 2 3 30 30 H 1.09000 * 109.46854 * 59.99703 * 1 2 3 31 31 H 1.08998 * 109.47158 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46995 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.46905 * 300.00150 * 3 2 1 34 34 H 1.09005 * 109.46942 * 59.99809 * 3 2 1 35 35 H 1.08996 * 109.47116 * 300.00747 * 4 2 1 36 36 H 1.09007 * 109.46551 * 60.00177 * 4 2 1 37 37 H 1.08996 * 109.47436 * 179.97438 * 4 2 1 38 38 H 1.08996 * 109.52186 * 57.69169 * 7 5 2 39 39 H 1.08995 * 109.51973 * 297.49850 * 7 5 2 40 40 H 0.97003 * 119.99886 * 24.56238 * 10 8 7 41 41 H 0.97003 * 120.00202 * 359.97438 * 13 11 10 42 42 H 1.09003 * 109.46564 * 59.99951 * 14 13 11 43 43 H 1.08993 * 109.46901 * 300.00286 * 14 13 11 44 44 H 0.97001 * 120.00485 * 0.02562 * 17 15 14 45 45 H 0.96999 * 119.99863 * 180.02562 * 21 20 18 46 46 H 1.08990 * 109.52331 * 176.88748 * 26 8 7 47 47 H 1.09001 * 109.51771 * 297.01328 * 26 8 7 48 48 H 1.08996 * 109.47618 * 62.37872 * 27 26 8 49 49 H 1.08994 * 109.47972 * 182.41409 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2492 6 1 3.1300 -0.7210 1.2496 7 6 1.5288 -0.0007 2.4995 8 6 1.9934 -0.7629 3.7444 9 1 3.0824 -0.7562 3.7923 10 7 1.4462 -0.1232 4.9433 11 6 2.0691 -0.2700 6.1294 12 8 3.0851 -0.9337 6.2044 13 7 1.5654 0.3181 7.2324 14 6 2.2422 0.1581 8.5219 15 6 1.4824 0.9093 9.5847 16 8 0.4744 1.5180 9.2937 17 7 1.9224 0.9038 10.8586 18 6 1.2343 1.5918 11.8244 19 1 0.3372 2.1344 11.5652 20 6 1.6911 1.5909 13.1367 21 7 2.7830 0.9311 13.4519 22 14 0.7532 2.5277 14.4527 23 1 -0.6278 1.9910 14.5533 24 1 1.4423 2.3701 15.7587 25 1 0.6996 3.9674 14.0924 26 6 1.4931 -2.2083 3.6610 27 6 2.0056 -2.8436 2.3658 28 8 1.5638 -2.0687 1.2494 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6767 -0.2073 -2.1392 37 1 3.1300 -0.7209 -1.2495 38 1 0.4396 0.0349 2.4797 39 1 1.9271 1.0136 2.5237 40 1 0.6354 0.4060 4.8835 41 1 0.7546 0.8474 7.1726 42 1 3.2555 0.5539 8.4519 43 1 2.2824 -0.8995 8.7823 44 1 2.7283 0.4167 11.0913 45 1 3.1016 0.9302 14.3681 46 1 1.8657 -2.7726 4.5158 47 1 0.4031 -2.2172 3.6657 48 1 3.0951 -2.8711 2.3808 49 1 1.6173 -3.8584 2.2803 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345735951.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:40 Heat of formation + Delta-G solvation = -156.761413 kcal Electronic energy + Delta-G solvation = -28189.120910 eV Core-core repulsion = 24149.472675 eV Total energy + Delta-G solvation = -4039.648236 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.55998 -40.70566 -39.93321 -37.36985 -36.39507 -36.11960 -35.26900 -33.39017 -32.52248 -31.21494 -29.13392 -28.12475 -28.04852 -26.51587 -25.22147 -24.60327 -22.06579 -21.56800 -21.33780 -20.15282 -19.81783 -19.49163 -17.73171 -17.42585 -17.16082 -16.84773 -16.76463 -16.52013 -16.01102 -15.83104 -15.76285 -15.35631 -15.22880 -15.11765 -14.90999 -14.59467 -14.14550 -14.00265 -13.93958 -13.60231 -13.53672 -13.12827 -12.93359 -12.89373 -12.60468 -12.59102 -12.47037 -12.30286 -12.13745 -12.09669 -11.82342 -11.61033 -11.56229 -11.50748 -11.43986 -11.06821 -10.56341 -10.51456 -10.40749 -10.10456 -9.84062 -8.50835 -6.01225 1.38158 1.42327 1.51911 1.58919 1.89700 2.10118 2.28579 2.78642 3.02641 3.16252 3.29037 3.57224 3.77781 3.80823 4.03984 4.07900 4.08826 4.20953 4.26665 4.29628 4.39716 4.43615 4.45675 4.60160 4.64348 4.71897 4.79377 4.85888 4.89341 4.98016 5.02162 5.05345 5.11903 5.14070 5.20275 5.23890 5.30739 5.37561 5.38494 5.50528 5.54095 5.57510 5.90990 5.95313 6.30218 6.47943 7.01864 7.03261 7.42497 7.52529 7.94231 8.65761 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.031101 B = 0.001904 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.074247 B =14705.542591 C =15137.908784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.058 4.058 3 C -0.144 4.144 4 C -0.136 4.136 5 C 0.105 3.895 6 H 0.058 0.942 7 C -0.151 4.151 8 C 0.164 3.836 9 H 0.070 0.930 10 N -0.727 5.727 11 C 0.705 3.295 12 O -0.630 6.630 13 N -0.724 5.724 14 C 0.142 3.858 15 C 0.433 3.567 16 O -0.624 6.624 17 N -0.559 5.559 18 C -0.338 4.338 19 H 0.087 0.913 20 C -0.011 4.011 21 N -0.916 5.916 22 Si 0.998 3.002 23 H -0.270 1.270 24 H -0.272 1.272 25 H -0.270 1.270 26 C -0.162 4.162 27 C 0.068 3.932 28 O -0.381 6.381 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.409 0.591 41 H 0.410 0.590 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.399 0.601 45 H 0.280 0.720 46 H 0.060 0.940 47 H 0.075 0.925 48 H 0.053 0.947 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.447 -3.416 -27.384 27.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.058 4.058 3 C -0.202 4.202 4 C -0.194 4.194 5 C 0.046 3.954 6 H 0.076 0.924 7 C -0.189 4.189 8 C 0.059 3.941 9 H 0.088 0.912 10 N -0.382 5.382 11 C 0.405 3.595 12 O -0.512 6.512 13 N -0.382 5.382 14 C 0.014 3.986 15 C 0.220 3.780 16 O -0.512 6.512 17 N -0.194 5.194 18 C -0.467 4.467 19 H 0.105 0.895 20 C -0.212 4.212 21 N -0.556 5.556 22 Si 0.821 3.179 23 H -0.195 1.195 24 H -0.197 1.197 25 H -0.195 1.195 26 C -0.202 4.202 27 C -0.009 4.009 28 O -0.300 6.300 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.245 0.755 41 H 0.248 0.752 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.233 0.767 45 H 0.089 0.911 46 H 0.079 0.921 47 H 0.094 0.906 48 H 0.071 0.929 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.195 -3.706 -27.437 27.712 hybrid contribution -0.324 0.527 1.429 1.557 sum -1.519 -3.179 -26.008 26.246 Atomic orbital electron populations 1.21848 0.93782 1.01927 1.01972 1.20545 0.96663 0.95250 0.93366 1.21944 1.01307 0.94047 1.02866 1.21786 1.00738 1.00391 0.96447 1.22122 0.97291 0.81935 0.94003 0.92421 1.22601 1.03378 1.00347 0.92607 1.20864 0.98255 0.91971 0.83060 0.91229 1.45036 1.30746 1.56547 1.05911 1.15962 0.82857 0.79755 0.80935 1.90878 1.27419 1.46983 1.85911 1.44701 1.31355 1.55988 1.06126 1.20571 0.95802 1.00668 0.81589 1.20413 0.87406 0.85990 0.84150 1.90465 1.28943 1.50056 1.81750 1.41834 1.25971 1.45284 1.06360 1.19706 1.09412 1.29098 0.88507 0.89529 1.26143 0.97182 0.97956 0.99923 1.69677 1.22659 1.41799 1.21425 0.84917 0.78036 0.78399 0.76566 1.19495 1.19654 1.19477 1.22579 1.02178 0.96340 0.99054 1.22551 0.98791 0.95467 0.84085 1.87911 1.74281 1.22836 1.44988 0.92284 0.92092 0.92867 0.92325 0.91246 0.91899 0.92773 0.91868 0.92792 0.89223 0.89087 0.75453 0.75233 0.89108 0.89150 0.76700 0.91066 0.92119 0.90584 0.92892 0.87290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 7.98 71.98 0.57 -1.08 16 2 C -0.06 -0.70 0.63 -52.18 -0.03 -0.73 16 3 C -0.14 -1.44 8.12 71.98 0.58 -0.86 16 4 C -0.14 -1.62 8.33 71.98 0.60 -1.02 16 5 C 0.10 1.53 1.90 30.63 0.06 1.58 16 6 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 7 C -0.15 -2.19 4.17 30.69 0.13 -2.06 16 8 C 0.16 3.28 2.54 45.11 0.11 3.40 16 9 H 0.07 1.69 7.59 -2.39 -0.02 1.67 16 10 N -0.73 -16.42 5.09 -457.25 -2.33 -18.75 16 11 C 0.71 22.14 8.53 179.06 1.53 23.67 16 12 O -0.63 -24.08 16.01 -4.00 -0.06 -24.14 16 13 N -0.72 -23.75 5.53 -482.29 -2.67 -26.42 16 14 C 0.14 5.24 6.15 85.63 0.53 5.77 16 15 C 0.43 19.96 7.85 87.66 0.69 20.65 16 16 O -0.62 -32.02 15.24 -3.07 -0.05 -32.07 16 17 N -0.56 -28.06 5.29 -306.98 -1.62 -29.68 16 18 C -0.34 -18.57 9.68 84.04 0.81 -17.76 16 19 H 0.09 4.98 7.16 -2.91 -0.02 4.96 16 20 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 21 N -0.92 -48.61 13.05 21.66 0.28 -48.33 16 22 Si 1.00 41.62 29.55 68.60 2.03 43.64 16 23 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 24 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 25 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 26 C -0.16 -3.16 5.71 30.69 0.18 -2.98 16 27 C 0.07 1.11 6.84 72.01 0.49 1.61 16 28 O -0.38 -6.50 9.06 -148.98 -1.35 -7.85 16 29 H 0.06 0.67 6.38 -2.39 -0.02 0.66 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 0.77 7.68 -2.39 -0.02 0.75 16 32 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.07 0.59 8.14 -2.39 -0.02 0.58 16 34 H 0.06 0.61 6.49 -2.38 -0.02 0.60 16 35 H 0.05 0.76 7.68 -2.39 -0.02 0.74 16 36 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 37 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.09 1.20 6.31 -2.39 -0.02 1.18 16 39 H 0.09 1.19 6.57 -2.39 -0.02 1.18 16 40 H 0.41 7.21 8.62 -92.71 -0.80 6.42 16 41 H 0.41 13.03 7.45 -92.71 -0.69 12.33 16 42 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 43 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 44 H 0.40 19.27 7.90 -92.71 -0.73 18.54 16 45 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 46 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 48 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -66.52 389.94 -0.29 -66.81 By element: Atomic # 1 Polarization: 47.96 SS G_CDS: -1.24 Total: 46.72 kcal Atomic # 6 Polarization: 23.34 SS G_CDS: 6.72 Total: 30.06 kcal Atomic # 7 Polarization: -116.84 SS G_CDS: -6.34 Total: -123.17 kcal Atomic # 8 Polarization: -62.60 SS G_CDS: -1.46 Total: -64.06 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.64 kcal Total: -66.52 -0.29 -66.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345735951.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.949 kcal (2) G-P(sol) polarization free energy of solvation -66.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds