Wall clock time and date at job start Fri Apr 10 2020 14:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46777 * 2 1 4 4 C 1.53000 * 109.47187 * 119.99989 * 2 1 3 5 5 C 1.53003 * 109.46707 * 174.99989 * 4 2 1 6 6 H 1.09002 * 109.48065 * 55.02499 * 5 4 2 7 7 O 1.42904 * 109.48406 * 294.99872 * 5 4 2 8 8 C 1.42899 * 114.09711 * 178.85853 * 7 5 4 9 9 C 1.53098 * 109.41440 * 61.16120 * 8 7 5 10 10 C 1.53177 * 109.21356 * 302.35638 * 9 8 7 11 11 C 1.53100 * 109.47879 * 175.05409 * 5 4 2 12 12 H 1.08999 * 109.51737 * 57.62662 * 11 5 4 13 13 N 1.46493 * 109.52283 * 297.50378 * 11 5 4 14 14 C 1.34777 * 120.00270 * 154.99857 * 13 11 5 15 15 O 1.21596 * 119.99613 * 359.97438 * 14 13 11 16 16 N 1.34777 * 120.00528 * 179.97438 * 14 13 11 17 17 C 1.46499 * 120.00208 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.46940 * 180.02562 * 17 16 14 19 19 O 1.21287 * 119.99903 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99500 * 179.97438 * 18 17 16 21 21 C 1.37104 * 119.99911 * 179.97438 * 20 18 17 22 22 H 1.08004 * 119.99327 * 0.02562 * 21 20 18 23 23 C 1.38943 * 120.00361 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00146 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 119.99940 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.46936 * 89.99916 * 25 23 21 27 27 H 1.48499 * 109.47398 * 209.99623 * 25 23 21 28 28 H 1.48500 * 109.47230 * 329.99959 * 25 23 21 29 29 H 1.08993 * 109.47310 * 299.99574 * 1 2 3 30 30 H 1.08998 * 109.46937 * 60.00372 * 1 2 3 31 31 H 1.09005 * 109.46921 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47512 * 240.00473 * 2 1 3 33 33 H 1.08998 * 109.47084 * 299.99538 * 3 2 1 34 34 H 1.08993 * 109.46853 * 60.00146 * 3 2 1 35 35 H 1.09004 * 109.46497 * 180.02562 * 3 2 1 36 36 H 1.08997 * 109.47255 * 55.00552 * 4 2 1 37 37 H 1.08997 * 109.47054 * 294.99992 * 4 2 1 38 38 H 1.08999 * 109.48542 * 301.17828 * 8 7 5 39 39 H 1.08997 * 109.49104 * 181.14910 * 8 7 5 40 40 H 1.09002 * 109.52244 * 62.29577 * 9 8 7 41 41 H 1.09004 * 109.52508 * 182.42105 * 9 8 7 42 42 H 1.09001 * 109.54414 * 176.87772 * 10 9 8 43 43 H 1.09002 * 109.54680 * 297.14715 * 10 9 8 44 44 H 0.97001 * 120.00224 * 334.99573 * 13 11 5 45 45 H 0.97001 * 119.99398 * 0.02562 * 16 14 13 46 46 H 1.08999 * 109.46868 * 300.00392 * 17 16 14 47 47 H 1.08999 * 109.47054 * 60.00092 * 17 16 14 48 48 H 0.96997 * 120.00406 * 0.02562 * 20 18 17 49 49 H 0.97001 * 119.99879 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.8310 1.1878 6 1 3.9956 0.1612 1.0530 7 8 3.9388 -1.6661 0.0902 8 6 5.3504 -1.8158 -0.0746 9 6 5.9430 -2.4654 1.1787 10 6 5.6074 -1.6036 2.3998 11 6 4.0857 -1.4409 2.4919 12 1 3.6234 -2.4156 2.6482 13 7 3.7551 -0.5569 3.6122 14 6 3.6409 -1.0605 4.8572 15 8 3.8120 -2.2487 5.0503 16 7 3.3373 -0.2470 5.8880 17 6 3.2127 -0.7946 7.2411 18 6 2.8694 0.3144 8.2021 19 8 2.7419 1.4503 7.7966 20 7 2.7041 0.0437 9.5120 21 6 2.3924 1.0526 10.3864 22 1 2.2788 2.0642 10.0253 23 6 2.2214 0.7736 11.7368 24 7 1.9221 1.7406 12.5747 25 14 2.4171 -0.9761 12.3610 26 1 3.8321 -1.2086 12.7467 27 1 1.5419 -1.1807 13.5431 28 1 2.0329 -1.9298 11.2896 29 1 -0.3633 0.5137 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 3.1300 1.4425 -0.0005 36 1 1.6055 -1.7198 1.2951 37 1 1.7517 -0.1583 2.1369 38 1 5.8047 -0.8366 -0.2258 39 1 5.5506 -2.4469 -0.9404 40 1 5.5190 -3.4612 1.3080 41 1 7.0252 -2.5412 1.0727 42 1 5.9789 -2.0894 3.3021 43 1 6.0728 -0.6237 2.2936 44 1 3.6183 0.3910 3.4581 45 1 3.2005 0.7008 5.7338 46 1 2.4236 -1.5464 7.2575 47 1 4.1568 -1.2523 7.5362 48 1 2.8065 -0.8647 9.8363 49 1 1.8031 1.5459 13.5175 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345847526.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:45 Heat of formation + Delta-G solvation = -131.586987 kcal Electronic energy + Delta-G solvation = -28494.944926 eV Core-core repulsion = 24456.388336 eV Total energy + Delta-G solvation = -4038.556591 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.60823 -39.40835 -38.33176 -36.49850 -35.23746 -34.45591 -33.74707 -32.93490 -31.81302 -30.74313 -27.88449 -27.42995 -27.09459 -24.72345 -23.98532 -22.64871 -20.79861 -20.68351 -20.13590 -19.66165 -18.87888 -18.17599 -16.90985 -16.56177 -15.85516 -15.66718 -15.57748 -15.11158 -15.07941 -14.81641 -14.66682 -14.49492 -14.05490 -13.97178 -13.59468 -13.51831 -13.19793 -13.09962 -12.59873 -12.49542 -12.48381 -12.24859 -12.16634 -12.12059 -11.79659 -11.64849 -11.38262 -11.23833 -11.16810 -10.93901 -10.86094 -10.64751 -10.51099 -10.12083 -10.06544 -9.79919 -9.70551 -9.18130 -8.77753 -8.71088 -8.31217 -6.41559 -3.94208 2.64014 2.99310 3.04015 3.12207 3.29638 3.47096 3.56832 4.02925 4.17916 4.26713 4.49809 4.58556 4.59277 4.66218 4.70869 4.76718 4.79860 4.86809 5.04382 5.13559 5.22975 5.26797 5.39260 5.43877 5.47871 5.49917 5.55405 5.62281 5.65786 5.69363 5.71039 5.77185 5.78679 5.84511 5.90129 5.95436 6.00458 6.07337 6.18986 6.39331 6.62017 6.89157 6.99773 7.44231 7.99384 8.14284 8.43573 8.70745 8.80917 9.29105 9.62705 10.70600 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.017382 B = 0.002392 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.479863 B =11702.594692 C =12695.916747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.151 4.151 4 C -0.108 4.108 5 C 0.086 3.914 6 H 0.066 0.934 7 O -0.369 6.369 8 C 0.058 3.942 9 C -0.153 4.153 10 C -0.136 4.136 11 C 0.138 3.862 12 H 0.096 0.904 13 N -0.740 5.740 14 C 0.707 3.293 15 O -0.596 6.596 16 N -0.724 5.724 17 C 0.126 3.874 18 C 0.439 3.561 19 O -0.580 6.580 20 N -0.576 5.576 21 C -0.310 4.310 22 H 0.121 0.879 23 C 0.045 3.955 24 N -0.875 5.875 25 Si 0.879 3.121 26 H -0.269 1.269 27 H -0.275 1.275 28 H -0.267 1.267 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.050 0.950 39 H 0.095 0.905 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.396 0.604 45 H 0.408 0.592 46 H 0.083 0.917 47 H 0.083 0.917 48 H 0.375 0.625 49 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.505 -6.732 -25.984 27.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.113 4.113 3 C -0.208 4.208 4 C -0.145 4.145 5 C 0.027 3.973 6 H 0.083 0.917 7 O -0.287 6.287 8 C -0.018 4.018 9 C -0.191 4.191 10 C -0.174 4.174 11 C 0.032 3.968 12 H 0.114 0.886 13 N -0.397 5.397 14 C 0.407 3.593 15 O -0.475 6.475 16 N -0.382 5.382 17 C -0.002 4.002 18 C 0.225 3.775 19 O -0.464 6.464 20 N -0.214 5.214 21 C -0.438 4.438 22 H 0.139 0.861 23 C -0.159 4.159 24 N -0.513 5.513 25 Si 0.705 3.295 26 H -0.194 1.194 27 H -0.200 1.200 28 H -0.192 1.192 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.068 0.932 39 H 0.113 0.887 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.230 0.770 45 H 0.245 0.755 46 H 0.101 0.899 47 H 0.101 0.899 48 H 0.208 0.792 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.368 -7.074 -25.931 27.231 hybrid contribution 0.299 -0.329 0.874 0.980 sum 4.667 -7.403 -25.057 26.541 Atomic orbital electron populations 1.21844 0.95220 1.01758 1.01737 1.21073 0.95588 0.96047 0.98600 1.21922 1.00882 0.96113 1.01870 1.21713 0.92257 1.01911 0.98650 1.22361 0.96141 0.93371 0.85394 0.91661 1.87977 1.22478 1.69755 1.48485 1.22623 0.81443 1.00011 0.97766 1.22191 1.01553 1.00442 0.94949 1.22078 0.95917 1.00423 0.99028 1.21414 0.95107 0.95350 0.84906 0.88558 1.44969 1.77160 1.11584 1.05967 1.15807 0.78014 0.85131 0.80338 1.90907 1.58399 1.14219 1.83934 1.44750 1.75124 1.12265 1.06062 1.20800 1.02667 0.95617 0.81146 1.19655 0.85097 0.89585 0.83213 1.90532 1.56529 1.22305 1.77023 1.42119 1.62459 1.10115 1.06717 1.19435 1.45110 0.91533 0.87764 0.86100 1.25064 0.97035 0.98112 0.95698 1.69617 1.45909 1.31834 1.03989 0.86671 0.79230 0.83926 0.79676 1.19399 1.19987 1.19183 0.92622 0.92800 0.92701 0.90466 0.92783 0.92542 0.92762 0.90863 0.90124 0.93157 0.88689 0.90704 0.90626 0.90491 0.91717 0.76997 0.75488 0.89896 0.89915 0.79227 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.19 37.16 0.34 -0.77 16 2 C -0.09 -0.73 2.87 -90.62 -0.26 -0.99 16 3 C -0.15 -1.06 8.95 37.16 0.33 -0.73 16 4 C -0.11 -0.93 4.32 -26.73 -0.12 -1.04 16 5 C 0.09 0.74 2.07 -26.68 -0.06 0.68 16 6 H 0.07 0.50 6.35 -51.93 -0.33 0.17 16 7 O -0.37 -3.39 9.86 -35.23 -0.35 -3.74 16 8 C 0.06 0.41 6.84 37.21 0.25 0.67 16 9 C -0.15 -1.18 6.13 -26.59 -0.16 -1.34 16 10 C -0.14 -1.30 5.62 -26.48 -0.15 -1.45 16 11 C 0.14 1.43 2.08 -67.72 -0.14 1.29 16 12 H 0.10 1.23 7.57 -51.93 -0.39 0.84 16 13 N -0.74 -8.19 4.37 -58.47 -0.26 -8.45 16 14 C 0.71 10.67 8.54 -86.92 -0.74 9.93 16 15 O -0.60 -10.94 16.01 5.28 0.08 -10.85 16 16 N -0.72 -11.34 5.53 -66.41 -0.37 -11.71 16 17 C 0.13 2.18 6.15 -5.19 -0.03 2.15 16 18 C 0.44 9.55 7.85 -10.99 -0.09 9.46 16 19 O -0.58 -14.44 15.24 5.55 0.08 -14.36 16 20 N -0.58 -13.33 5.09 -10.96 -0.06 -13.38 16 21 C -0.31 -8.50 10.16 -14.93 -0.15 -8.65 16 22 H 0.12 3.77 7.39 -52.48 -0.39 3.39 16 23 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16 24 N -0.87 -24.90 13.96 55.50 0.77 -24.13 16 25 Si 0.88 18.96 27.74 -169.99 -4.71 14.24 16 26 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 27 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 28 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.65 7.70 -51.93 -0.40 0.25 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.05 0.37 6.46 -51.93 -0.34 0.03 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.70 7.49 -51.93 -0.39 0.32 16 38 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.40 3.51 8.55 -40.82 -0.35 3.16 16 45 H 0.41 6.22 7.45 -40.82 -0.30 5.91 16 46 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 47 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 48 H 0.37 7.66 5.76 -40.82 -0.24 7.42 16 49 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 391.82 15.07 5.90 5.90 Total: -1.00 -32.45 391.82 -8.16 -40.61 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: -8.21 Total: 15.54 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: -1.06 Total: 10.32 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: 0.10 Total: -57.67 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: -0.18 Total: -28.95 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -4.71 Total: 14.24 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.45 -8.16 -40.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345847526.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.974 kcal (2) G-P(sol) polarization free energy of solvation -32.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds