Wall clock time and date at job start Fri Apr 10 2020 14:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46777 * 2 1 4 4 C 1.53000 * 109.47187 * 119.99989 * 2 1 3 5 5 C 1.53003 * 109.46707 * 174.99989 * 4 2 1 6 6 H 1.09002 * 109.48065 * 55.02499 * 5 4 2 7 7 O 1.42904 * 109.48406 * 294.99872 * 5 4 2 8 8 C 1.42899 * 114.09711 * 178.85853 * 7 5 4 9 9 C 1.53098 * 109.41440 * 61.16120 * 8 7 5 10 10 C 1.53177 * 109.21356 * 302.35638 * 9 8 7 11 11 C 1.53100 * 109.47879 * 175.05409 * 5 4 2 12 12 H 1.08999 * 109.51737 * 57.62662 * 11 5 4 13 13 N 1.46493 * 109.52283 * 297.50378 * 11 5 4 14 14 C 1.34777 * 120.00270 * 154.99857 * 13 11 5 15 15 O 1.21596 * 119.99613 * 359.97438 * 14 13 11 16 16 N 1.34777 * 120.00528 * 179.97438 * 14 13 11 17 17 C 1.46499 * 120.00208 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.46940 * 180.02562 * 17 16 14 19 19 O 1.21287 * 119.99903 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99500 * 179.97438 * 18 17 16 21 21 C 1.37104 * 119.99911 * 179.97438 * 20 18 17 22 22 H 1.08004 * 119.99327 * 0.02562 * 21 20 18 23 23 C 1.38943 * 120.00361 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00146 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 119.99940 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.46936 * 89.99916 * 25 23 21 27 27 H 1.48499 * 109.47398 * 209.99623 * 25 23 21 28 28 H 1.48500 * 109.47230 * 329.99959 * 25 23 21 29 29 H 1.08993 * 109.47310 * 299.99574 * 1 2 3 30 30 H 1.08998 * 109.46937 * 60.00372 * 1 2 3 31 31 H 1.09005 * 109.46921 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47512 * 240.00473 * 2 1 3 33 33 H 1.08998 * 109.47084 * 299.99538 * 3 2 1 34 34 H 1.08993 * 109.46853 * 60.00146 * 3 2 1 35 35 H 1.09004 * 109.46497 * 180.02562 * 3 2 1 36 36 H 1.08997 * 109.47255 * 55.00552 * 4 2 1 37 37 H 1.08997 * 109.47054 * 294.99992 * 4 2 1 38 38 H 1.08999 * 109.48542 * 301.17828 * 8 7 5 39 39 H 1.08997 * 109.49104 * 181.14910 * 8 7 5 40 40 H 1.09002 * 109.52244 * 62.29577 * 9 8 7 41 41 H 1.09004 * 109.52508 * 182.42105 * 9 8 7 42 42 H 1.09001 * 109.54414 * 176.87772 * 10 9 8 43 43 H 1.09002 * 109.54680 * 297.14715 * 10 9 8 44 44 H 0.97001 * 120.00224 * 334.99573 * 13 11 5 45 45 H 0.97001 * 119.99398 * 0.02562 * 16 14 13 46 46 H 1.08999 * 109.46868 * 300.00392 * 17 16 14 47 47 H 1.08999 * 109.47054 * 60.00092 * 17 16 14 48 48 H 0.96997 * 120.00406 * 0.02562 * 20 18 17 49 49 H 0.97001 * 119.99879 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.8310 1.1878 6 1 3.9956 0.1612 1.0530 7 8 3.9388 -1.6661 0.0902 8 6 5.3504 -1.8158 -0.0746 9 6 5.9430 -2.4654 1.1787 10 6 5.6074 -1.6036 2.3998 11 6 4.0857 -1.4409 2.4919 12 1 3.6234 -2.4156 2.6482 13 7 3.7551 -0.5569 3.6122 14 6 3.6409 -1.0605 4.8572 15 8 3.8120 -2.2487 5.0503 16 7 3.3373 -0.2470 5.8880 17 6 3.2127 -0.7946 7.2411 18 6 2.8694 0.3144 8.2021 19 8 2.7419 1.4503 7.7966 20 7 2.7041 0.0437 9.5120 21 6 2.3924 1.0526 10.3864 22 1 2.2788 2.0642 10.0253 23 6 2.2214 0.7736 11.7368 24 7 1.9221 1.7406 12.5747 25 14 2.4171 -0.9761 12.3610 26 1 3.8321 -1.2086 12.7467 27 1 1.5419 -1.1807 13.5431 28 1 2.0329 -1.9298 11.2896 29 1 -0.3633 0.5137 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 3.1300 1.4425 -0.0005 36 1 1.6055 -1.7198 1.2951 37 1 1.7517 -0.1583 2.1369 38 1 5.8047 -0.8366 -0.2258 39 1 5.5506 -2.4469 -0.9404 40 1 5.5190 -3.4612 1.3080 41 1 7.0252 -2.5412 1.0727 42 1 5.9789 -2.0894 3.3021 43 1 6.0728 -0.6237 2.2936 44 1 3.6183 0.3910 3.4581 45 1 3.2005 0.7008 5.7338 46 1 2.4236 -1.5464 7.2575 47 1 4.1568 -1.2523 7.5362 48 1 2.8065 -0.8647 9.8363 49 1 1.8031 1.5459 13.5175 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345847526.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:44 Heat of formation + Delta-G solvation = -155.771353 kcal Electronic energy + Delta-G solvation = -28495.993639 eV Core-core repulsion = 24456.388336 eV Total energy + Delta-G solvation = -4039.605303 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.59407 -40.62152 -39.88221 -37.12680 -36.38151 -36.05215 -35.28846 -33.84601 -33.65657 -31.61560 -29.24362 -28.03576 -27.91222 -26.26970 -25.03504 -23.36410 -21.96358 -21.50549 -21.41121 -20.77577 -20.59363 -19.57791 -17.92593 -17.52046 -17.18428 -16.88654 -16.77545 -16.55775 -16.03832 -15.84210 -15.81478 -15.45335 -15.23874 -15.04705 -14.89544 -14.36971 -14.32727 -14.16641 -13.99531 -13.96256 -13.64071 -13.23625 -13.10713 -12.96891 -12.81395 -12.48389 -12.44481 -12.30477 -12.13643 -12.00304 -11.80020 -11.57829 -11.57092 -11.50558 -11.43222 -11.12907 -10.65230 -10.57482 -10.34060 -10.27858 -9.80522 -8.45390 -6.07242 1.31382 1.34164 1.43502 1.52361 1.79197 2.10553 2.20551 2.71455 2.87557 3.11054 3.29803 3.45514 3.76805 3.92398 3.98971 4.00625 4.05418 4.13517 4.14906 4.19365 4.40333 4.44351 4.45308 4.54687 4.64459 4.77591 4.80887 4.83791 4.86528 4.88476 5.02387 5.03955 5.10617 5.12833 5.17050 5.24192 5.29751 5.34814 5.45427 5.47964 5.49731 5.56937 5.88428 5.92071 6.26147 6.49083 6.78447 7.00271 7.28950 7.51755 7.78402 8.71008 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.017382 B = 0.002392 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.479863 B =11702.594692 C =12695.916747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 C -0.149 4.149 4 C -0.107 4.107 5 C 0.095 3.905 6 H 0.082 0.918 7 O -0.382 6.382 8 C 0.055 3.945 9 C -0.149 4.149 10 C -0.133 4.133 11 C 0.139 3.861 12 H 0.069 0.931 13 N -0.723 5.723 14 C 0.709 3.291 15 O -0.628 6.628 16 N -0.726 5.726 17 C 0.139 3.861 18 C 0.447 3.553 19 O -0.613 6.613 20 N -0.578 5.578 21 C -0.330 4.330 22 H 0.064 0.936 23 C -0.008 4.008 24 N -0.926 5.926 25 Si 0.958 3.042 26 H -0.257 1.257 27 H -0.274 1.274 28 H -0.233 1.233 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.112 0.888 40 H 0.062 0.938 41 H 0.093 0.907 42 H 0.052 0.948 43 H 0.077 0.923 44 H 0.409 0.591 45 H 0.410 0.590 46 H 0.100 0.900 47 H 0.101 0.899 48 H 0.392 0.608 49 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.463 -8.471 -27.543 29.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.108 4.108 3 C -0.206 4.206 4 C -0.145 4.145 5 C 0.037 3.963 6 H 0.100 0.900 7 O -0.301 6.301 8 C -0.021 4.021 9 C -0.187 4.187 10 C -0.172 4.172 11 C 0.033 3.967 12 H 0.087 0.913 13 N -0.380 5.380 14 C 0.409 3.591 15 O -0.509 6.509 16 N -0.383 5.383 17 C 0.010 3.990 18 C 0.234 3.766 19 O -0.499 6.499 20 N -0.218 5.218 21 C -0.459 4.459 22 H 0.082 0.918 23 C -0.208 4.208 24 N -0.566 5.566 25 Si 0.778 3.222 26 H -0.181 1.181 27 H -0.199 1.199 28 H -0.156 1.156 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.130 0.870 40 H 0.081 0.919 41 H 0.112 0.888 42 H 0.071 0.929 43 H 0.096 0.904 44 H 0.246 0.754 45 H 0.248 0.752 46 H 0.118 0.882 47 H 0.119 0.881 48 H 0.228 0.772 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.333 -8.800 -27.548 29.407 hybrid contribution 0.007 0.307 1.239 1.276 sum 5.339 -8.493 -26.309 28.157 Atomic orbital electron populations 1.21846 0.95154 1.01615 1.01960 1.21020 0.95632 0.96428 0.97761 1.21911 1.01195 0.95408 1.02125 1.21696 0.92441 1.01212 0.99107 1.22282 0.95971 0.93800 0.84290 0.90026 1.87973 1.23933 1.69932 1.48231 1.22805 0.80307 1.01142 0.97850 1.22175 1.02696 0.99430 0.94394 1.22042 0.94999 1.01258 0.98914 1.21473 0.95769 0.94118 0.85316 0.91256 1.44841 1.75878 1.12412 1.04855 1.15859 0.77725 0.84523 0.81035 1.90888 1.59873 1.15581 1.84551 1.44692 1.75495 1.12405 1.05735 1.20681 1.04038 0.93671 0.80613 1.20487 0.82635 0.90165 0.83304 1.90521 1.57232 1.24421 1.77733 1.41926 1.63217 1.10002 1.06702 1.19026 1.47124 0.90549 0.89216 0.91783 1.26052 0.95763 1.03778 0.95201 1.69778 1.47128 1.35010 1.04664 0.85456 0.79722 0.77397 0.79625 1.18107 1.19873 1.15617 0.92946 0.92014 0.93065 0.90941 0.92247 0.92613 0.92234 0.92290 0.90333 0.91645 0.87030 0.91885 0.88841 0.92931 0.90387 0.75432 0.75222 0.88211 0.88089 0.77248 0.90937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.19 71.98 0.66 -1.43 16 2 C -0.09 -1.28 2.87 -10.79 -0.03 -1.31 16 3 C -0.15 -1.82 8.95 71.98 0.64 -1.17 16 4 C -0.11 -1.75 4.32 30.60 0.13 -1.61 16 5 C 0.09 1.48 2.07 30.63 0.06 1.55 16 6 H 0.08 1.04 6.35 -2.39 -0.02 1.02 16 7 O -0.38 -6.35 9.86 -148.98 -1.47 -7.82 16 8 C 0.06 0.64 6.84 72.01 0.49 1.14 16 9 C -0.15 -2.02 6.13 30.69 0.19 -1.84 16 10 C -0.13 -2.38 5.62 30.76 0.17 -2.20 16 11 C 0.14 2.75 2.08 45.13 0.09 2.84 16 12 H 0.07 1.79 7.57 -2.39 -0.02 1.77 16 13 N -0.72 -15.17 4.37 -457.16 -2.00 -17.17 16 14 C 0.71 20.60 8.54 179.05 1.53 22.13 16 15 O -0.63 -22.49 16.01 -4.02 -0.06 -22.55 16 16 N -0.73 -21.79 5.53 -482.29 -2.67 -24.46 16 17 C 0.14 4.52 6.15 85.63 0.53 5.05 16 18 C 0.45 19.24 7.85 87.66 0.69 19.93 16 19 O -0.61 -31.07 15.24 -3.05 -0.05 -31.12 16 20 N -0.58 -26.42 5.09 -306.99 -1.56 -27.98 16 21 C -0.33 -18.63 10.16 84.04 0.85 -17.78 16 22 H 0.06 4.26 7.39 -2.91 -0.02 4.24 16 23 C -0.01 -0.43 5.50 84.92 0.47 0.04 16 24 N -0.93 -54.25 13.96 21.66 0.30 -53.95 16 25 Si 0.96 38.04 27.74 68.60 1.90 39.94 16 26 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 27 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 28 H -0.23 -7.91 6.52 99.48 0.65 -7.26 16 29 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.07 1.12 7.70 -2.38 -0.02 1.10 16 33 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.06 0.66 6.46 -2.39 -0.02 0.64 16 36 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.08 1.30 7.49 -2.39 -0.02 1.28 16 38 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 42 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.41 6.56 8.55 -92.71 -0.79 5.77 16 45 H 0.41 12.13 7.45 -92.71 -0.69 11.44 16 46 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 47 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 48 H 0.39 15.06 5.76 -92.71 -0.53 14.53 16 49 H 0.28 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -73.43 391.82 -0.22 -73.66 By element: Atomic # 1 Polarization: 47.21 SS G_CDS: -1.10 Total: 46.11 kcal Atomic # 6 Polarization: 18.85 SS G_CDS: 6.48 Total: 25.33 kcal Atomic # 7 Polarization: -117.63 SS G_CDS: -5.93 Total: -123.55 kcal Atomic # 8 Polarization: -59.91 SS G_CDS: -1.58 Total: -61.49 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 1.90 Total: 39.94 kcal Total: -73.43 -0.22 -73.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345847526.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.112 kcal (2) G-P(sol) polarization free energy of solvation -73.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds