Wall clock time and date at job start Fri Apr 10 2020 14:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 5 5 C 1.50703 * 109.46912 * 299.99748 * 4 2 1 6 6 H 1.07996 * 119.99751 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00001 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00094 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99955 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47116 * 59.99536 * 9 7 5 11 11 H 1.48500 * 109.46585 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46730 * 299.99515 * 9 7 5 13 13 C 1.53001 * 109.46637 * 239.99940 * 2 1 3 14 14 N 1.46500 * 109.47299 * 60.00229 * 13 2 1 15 15 C 1.34777 * 120.00376 * 179.97438 * 14 13 2 16 16 O 1.21591 * 119.99538 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00267 * 180.02562 * 15 14 13 18 18 C 1.46490 * 120.00131 * 180.02562 * 17 15 14 19 19 C 1.52997 * 109.47432 * 179.97438 * 18 17 15 20 20 H 1.09006 * 110.27484 * 59.29562 * 19 18 17 21 21 C 1.54949 * 110.31494 * 181.38825 * 19 18 17 22 22 C 1.55415 * 100.89186 * 155.28737 * 21 19 18 23 23 C 1.54380 * 102.31157 * 325.99344 * 22 21 19 24 24 H 1.09003 * 109.82751 * 261.76992 * 23 22 21 25 25 C 1.50706 * 109.82758 * 140.79925 * 23 22 21 26 26 N 1.34779 * 120.00214 * 65.41219 * 25 23 22 27 27 O 1.21285 * 119.99706 * 245.41042 * 25 23 22 28 28 O 1.43230 * 107.59019 * 21.28702 * 23 22 21 29 29 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 30 30 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 31 31 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 34 34 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 35 35 H 1.09002 * 109.47398 * 59.99826 * 4 2 1 36 36 H 1.09001 * 109.47194 * 180.02562 * 4 2 1 37 37 H 0.97000 * 120.00333 * 179.97438 * 8 7 5 38 38 H 1.09001 * 109.47109 * 179.97438 * 13 2 1 39 39 H 1.09002 * 109.47508 * 299.99876 * 13 2 1 40 40 H 0.97003 * 119.99983 * 359.97438 * 14 13 2 41 41 H 0.97004 * 119.99505 * 359.97438 * 17 15 14 42 42 H 1.09004 * 109.47542 * 299.99602 * 18 17 15 43 43 H 1.09004 * 109.47192 * 60.00020 * 18 17 15 44 44 H 1.08996 * 111.12441 * 273.28168 * 21 19 18 45 45 H 1.09002 * 111.12228 * 37.44192 * 21 19 18 46 46 H 1.09002 * 110.87942 * 207.75440 * 22 21 19 47 47 H 1.08998 * 110.93103 * 84.26055 * 22 21 19 48 48 H 0.97001 * 119.99545 * 0.02562 * 26 25 23 49 49 H 0.96997 * 119.99999 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.5377 -0.0110 2.4797 6 1 0.9165 0.8669 2.3806 7 6 1.8713 -0.4818 3.7319 8 7 2.6274 -1.5511 3.8526 9 14 1.2481 0.3984 5.2572 10 1 -0.2369 0.3974 5.2573 11 1 1.7432 -0.3017 6.4696 12 1 1.7421 1.7987 5.2571 13 6 2.0399 -0.7213 -1.2493 14 7 1.5516 -0.0307 -2.4454 15 6 1.8775 -0.4908 -3.6696 16 8 2.5772 -1.4789 -3.7811 17 7 1.4286 0.1449 -4.7700 18 6 1.7824 -0.3556 -6.1005 19 6 1.1493 0.5398 -7.1673 20 1 1.5007 1.5657 -7.0565 21 6 1.4826 0.0073 -8.5837 22 6 0.2965 0.5886 -9.4027 23 6 -0.8615 0.5427 -8.3828 24 1 -1.4699 -0.3455 -8.5539 25 6 -1.7111 1.7801 -8.5179 26 7 -2.4114 1.9966 -9.6489 27 8 -1.7645 2.5812 -7.6088 28 8 -0.2833 0.4908 -7.0734 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9562 0.8900 35 1 1.6767 -1.7490 1.2492 36 1 3.1301 -0.7209 1.2494 37 1 2.8623 -1.8821 4.7335 38 1 3.1299 -0.7209 -1.2496 39 1 1.6766 -1.7490 -1.2493 40 1 0.9936 0.7578 -2.3564 41 1 0.8707 0.9334 -4.6809 42 1 2.8663 -0.3475 -6.2155 43 1 1.4125 -1.3745 -6.2157 44 1 2.4359 0.4004 -8.9369 45 1 1.4770 -1.0825 -8.6050 46 1 0.0772 -0.0381 -10.2671 47 1 0.5016 1.6138 -9.7110 48 1 -2.3689 1.3557 -10.3758 49 1 -2.9585 2.7929 -9.7357 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354449410.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:50:29 Heat of formation + Delta-G solvation = -163.680665 kcal Electronic energy + Delta-G solvation = -27993.538526 eV Core-core repulsion = 23953.590249 eV Total energy + Delta-G solvation = -4039.948277 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.48309 -40.98926 -39.39872 -38.71862 -35.76759 -35.21200 -34.80645 -33.90680 -33.07385 -31.33241 -29.08609 -27.95944 -27.92264 -26.65679 -24.78518 -23.48632 -22.60984 -21.79549 -21.27303 -20.11595 -19.07939 -18.62493 -18.41231 -18.34802 -17.29940 -17.17698 -16.79478 -16.50340 -16.48554 -15.67481 -15.59167 -15.43136 -15.34867 -14.96869 -14.64722 -14.41164 -14.33025 -13.94915 -13.92539 -13.74104 -13.44019 -12.95026 -12.82978 -12.74562 -12.66808 -12.57074 -12.32035 -12.31511 -12.21356 -11.98744 -11.91561 -11.52593 -11.41439 -11.31872 -10.96866 -10.85196 -10.66582 -10.49252 -10.40889 -10.36118 -9.72431 -8.12365 -6.20162 1.42972 1.45484 1.52572 1.57128 1.73835 2.17154 2.29585 2.45472 2.86986 3.21510 3.34907 3.41933 3.72405 3.91724 3.98312 4.00722 4.09694 4.10826 4.21941 4.23950 4.42220 4.60089 4.63059 4.70518 4.75026 4.79042 4.86891 4.92331 4.97642 4.99719 5.11831 5.12866 5.19995 5.41145 5.47079 5.50527 5.51026 5.54461 5.60636 5.81449 5.81572 5.90982 5.95748 6.00123 6.32624 6.48408 6.94109 7.09988 7.35038 7.47031 7.59645 8.99878 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.023382 B = 0.002004 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.217047 B =13969.398598 C =14839.447901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.064 4.064 3 C -0.121 4.121 4 C 0.041 3.959 5 C -0.514 4.514 6 H 0.072 0.928 7 C -0.007 4.007 8 N -0.937 5.937 9 Si 0.960 3.040 10 H -0.268 1.268 11 H -0.290 1.290 12 H -0.267 1.267 13 C 0.162 3.838 14 N -0.726 5.726 15 C 0.698 3.302 16 O -0.640 6.640 17 N -0.732 5.732 18 C 0.143 3.857 19 C 0.067 3.933 20 H 0.078 0.922 21 C -0.140 4.140 22 C -0.133 4.133 23 C 0.056 3.944 24 H 0.130 0.870 25 C 0.498 3.502 26 N -0.831 5.831 27 O -0.587 6.587 28 O -0.375 6.375 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.036 0.964 32 H 0.038 0.962 33 H 0.066 0.934 34 H 0.056 0.944 35 H -0.013 1.013 36 H -0.012 1.012 37 H 0.260 0.740 38 H 0.045 0.955 39 H 0.043 0.957 40 H 0.408 0.592 41 H 0.408 0.592 42 H 0.083 0.917 43 H 0.062 0.938 44 H 0.110 0.890 45 H 0.097 0.903 46 H 0.130 0.870 47 H 0.083 0.917 48 H 0.420 0.580 49 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.065 7.167 -35.709 37.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.064 4.064 3 C -0.178 4.178 4 C 0.003 3.997 5 C -0.552 4.552 6 H 0.090 0.910 7 C -0.203 4.203 8 N -0.579 5.579 9 Si 0.785 3.215 10 H -0.192 1.192 11 H -0.216 1.216 12 H -0.192 1.192 13 C 0.037 3.963 14 N -0.382 5.382 15 C 0.398 3.602 16 O -0.522 6.522 17 N -0.388 5.388 18 C 0.019 3.981 19 C 0.009 3.991 20 H 0.096 0.904 21 C -0.178 4.178 22 C -0.170 4.170 23 C -0.005 4.005 24 H 0.148 0.852 25 C 0.283 3.717 26 N -0.397 5.397 27 O -0.467 6.467 28 O -0.293 6.293 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.005 0.995 36 H 0.006 0.994 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.245 0.755 41 H 0.244 0.756 42 H 0.101 0.899 43 H 0.081 0.919 44 H 0.128 0.872 45 H 0.116 0.884 46 H 0.149 0.851 47 H 0.102 0.898 48 H 0.252 0.748 49 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -7.381 6.536 -34.830 36.198 hybrid contribution -0.641 0.682 1.016 1.382 sum -8.022 7.218 -33.813 35.494 Atomic orbital electron populations 1.21685 0.93784 1.00911 1.01446 1.20710 0.96559 0.96328 0.92840 1.21683 0.99973 0.94655 1.01488 1.18960 0.94366 0.94195 0.92154 1.21555 1.30463 1.12116 0.91093 0.91034 1.25966 0.95715 0.95919 1.02733 1.70118 1.38700 1.24910 1.24130 0.85574 0.78894 0.78728 0.78279 1.19248 1.21625 1.19169 1.21059 0.97511 0.94894 0.82809 1.45054 1.56148 1.33386 1.03654 1.16142 0.80181 0.82597 0.81301 1.90876 1.45009 1.29605 1.86717 1.44934 1.56305 1.33184 1.04417 1.21442 0.99849 0.97580 0.79257 1.23381 0.80627 0.99078 0.95988 0.90366 1.23305 1.00401 1.02996 0.91075 1.23160 0.91577 1.03970 0.98323 1.22927 0.96634 0.95929 0.84984 0.85243 1.21507 0.80114 0.87941 0.82175 1.43664 1.49419 1.28784 1.17867 1.90762 1.65665 1.48792 1.41458 1.88560 1.19590 1.94418 1.26761 0.92507 0.91606 0.94432 0.94278 0.91509 0.92529 0.99503 0.99397 0.93172 0.93678 0.93902 0.75510 0.75604 0.89900 0.91927 0.87187 0.88445 0.85148 0.89802 0.74795 0.76116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.38 8.05 71.98 0.58 -3.80 16 2 C -0.06 -2.55 0.54 -52.18 -0.03 -2.58 16 3 C -0.12 -4.31 8.05 71.98 0.58 -3.73 16 4 C 0.04 2.15 4.04 29.85 0.12 2.27 16 5 C -0.51 -28.28 7.65 25.60 0.20 -28.09 16 6 H 0.07 3.69 5.68 -2.91 -0.02 3.67 16 7 C -0.01 -0.37 5.46 84.65 0.46 0.09 16 8 N -0.94 -58.00 13.29 21.45 0.28 -57.72 16 9 Si 0.96 44.55 29.54 68.60 2.03 46.58 16 10 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 11 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 12 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 13 C 0.16 6.25 4.56 86.38 0.39 6.65 16 14 N -0.73 -22.71 4.96 -478.53 -2.37 -25.09 16 15 C 0.70 22.98 8.57 179.05 1.53 24.52 16 16 O -0.64 -26.61 16.34 -4.00 -0.07 -26.68 16 17 N -0.73 -17.88 5.50 -478.55 -2.63 -20.51 16 18 C 0.14 2.81 5.40 86.38 0.47 3.27 16 19 C 0.07 0.94 3.49 31.26 0.11 1.05 16 20 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 21 C -0.14 -0.82 6.58 32.09 0.21 -0.61 16 22 C -0.13 -0.41 6.52 31.89 0.21 -0.20 16 23 C 0.06 0.58 3.95 30.32 0.12 0.70 16 24 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 25 C 0.50 7.26 7.30 87.66 0.64 7.90 16 26 N -0.83 -3.76 8.85 -173.52 -1.54 -5.29 16 27 O -0.59 -15.84 17.36 15.74 0.27 -15.56 16 28 O -0.37 -6.98 10.15 -130.19 -1.32 -8.30 16 29 H 0.06 2.17 6.62 -2.39 -0.02 2.15 16 30 H 0.07 1.90 6.86 -2.39 -0.02 1.88 16 31 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.07 1.88 6.86 -2.38 -0.02 1.86 16 34 H 0.06 2.14 6.62 -2.39 -0.02 2.12 16 35 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 36 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 37 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 38 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.41 10.47 6.18 -92.71 -0.57 9.90 16 41 H 0.41 8.68 8.46 -92.71 -0.78 7.89 16 42 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 43 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 45 H 0.10 0.47 8.06 -2.39 -0.02 0.45 16 46 H 0.13 -0.49 8.14 -2.39 -0.02 -0.51 16 47 H 0.08 0.29 7.84 -2.39 -0.02 0.27 16 48 H 0.42 -1.42 8.83 -92.71 -0.82 -2.24 16 49 H 0.41 1.66 8.93 -92.71 -0.83 0.83 16 Total: -1.00 -85.69 394.41 -1.76 -87.45 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: -2.01 Total: 17.70 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 5.59 Total: 7.43 kcal Atomic # 7 Polarization: -102.36 SS G_CDS: -6.26 Total: -108.61 kcal Atomic # 8 Polarization: -49.43 SS G_CDS: -1.11 Total: -50.54 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -85.69 -1.76 -87.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354449410.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.233 kcal (2) G-P(sol) polarization free energy of solvation -85.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds