Wall clock time and date at job start Fri Apr 10 2020 14:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47018 * 2 1 4 4 C 1.53001 * 109.47284 * 180.02562 * 3 2 1 5 5 C 1.52991 * 109.47624 * 180.02562 * 4 3 2 6 6 H 1.08998 * 110.53931 * 307.82887 * 5 4 3 7 7 N 1.47316 * 110.72994 * 70.74809 * 5 4 3 8 8 C 1.34528 * 106.61964 * 118.36997 * 7 5 4 9 9 O 1.21544 * 123.77365 * 180.21062 * 8 7 5 10 10 N 1.33792 * 112.45782 * 0.38261 * 8 7 5 11 11 C 1.46503 * 124.17865 * 179.86385 * 10 8 7 12 12 C 1.52995 * 109.46952 * 269.70046 * 11 10 8 13 13 H 1.09006 * 109.47599 * 305.00069 * 12 11 10 14 14 O 1.42905 * 109.47314 * 65.00293 * 12 11 10 15 15 C 1.53004 * 109.46867 * 184.99976 * 12 11 10 16 16 N 1.46904 * 109.46905 * 178.50685 * 15 12 11 17 17 C 1.46904 * 110.99700 * 164.00886 * 16 15 12 18 18 C 1.46895 * 111.00422 * 287.96863 * 16 15 12 19 19 C 1.50694 * 109.47359 * 170.00313 * 18 16 15 20 20 H 1.08000 * 119.99961 * 359.97438 * 19 18 16 21 21 C 1.37883 * 120.00369 * 179.97438 * 19 18 16 22 22 N 1.31508 * 120.00439 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99437 * 359.97438 * 21 19 18 24 24 H 1.48495 * 109.47281 * 90.00331 * 23 21 19 25 25 H 1.48502 * 109.46967 * 210.00131 * 23 21 19 26 26 H 1.48494 * 109.47306 * 329.99460 * 23 21 19 27 27 C 1.34769 * 111.64301 * 359.60177 * 10 8 7 28 28 O 1.21233 * 127.16041 * 180.19978 * 27 10 8 29 29 H 1.08997 * 109.47113 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46617 * 299.99834 * 1 2 3 31 31 H 1.08993 * 109.47088 * 59.99470 * 1 2 3 32 32 H 1.09003 * 109.46617 * 240.00166 * 2 1 3 33 33 H 1.08993 * 109.47088 * 120.00530 * 2 1 3 34 34 H 1.09003 * 109.47291 * 60.00579 * 3 2 1 35 35 H 1.09001 * 109.47484 * 299.99915 * 3 2 1 36 36 H 1.09000 * 109.47246 * 59.99262 * 4 3 2 37 37 H 1.09007 * 109.46759 * 300.00474 * 4 3 2 38 38 H 0.97005 * 126.69271 * 298.62770 * 7 5 4 39 39 H 1.09003 * 109.47109 * 29.70159 * 11 10 8 40 40 H 1.08999 * 109.46947 * 149.70414 * 11 10 8 41 41 H 0.96696 * 113.99783 * 59.99668 * 14 12 11 42 42 H 1.08998 * 109.47021 * 298.50864 * 15 12 11 43 43 H 1.08996 * 109.46892 * 58.51365 * 15 12 11 44 44 H 1.08992 * 109.46958 * 65.48957 * 17 16 15 45 45 H 1.09005 * 109.46886 * 185.49032 * 17 16 15 46 46 H 1.08996 * 109.47065 * 305.48736 * 17 16 15 47 47 H 1.09003 * 109.46829 * 289.99621 * 18 16 15 48 48 H 1.08997 * 109.47129 * 49.99450 * 18 16 15 49 49 H 0.97000 * 120.00366 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0801 2.8849 0.0000 6 1 3.6170 3.4546 -0.8057 7 7 3.8262 3.5272 1.3012 8 6 5.0278 3.8541 1.8100 9 8 5.1805 4.4014 2.8844 10 7 6.0360 3.5128 0.9993 11 6 7.4500 3.7520 1.2989 12 6 7.8626 5.1203 0.7528 13 1 7.6287 5.1728 -0.3106 14 8 7.1503 6.1454 1.4484 15 6 9.3664 5.3175 0.9545 16 7 9.7689 6.6161 0.3981 17 6 11.0936 7.0134 0.8936 18 6 9.7420 6.5909 -1.0704 19 6 9.9181 7.9906 -1.6003 20 1 10.0376 8.8164 -0.9146 21 6 9.9266 8.2170 -2.9603 22 7 10.0798 9.4385 -3.4227 23 14 9.7205 6.7884 -4.1461 24 1 8.2780 6.5921 -4.4388 25 1 10.4458 7.0839 -5.4079 26 1 10.2742 5.5537 -3.5346 27 6 5.5905 2.9167 -0.1242 28 8 6.2586 2.4942 -1.0434 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.9330 0.9287 -0.8908 37 1 3.9337 0.9285 0.8891 38 1 2.9613 3.6807 1.7129 39 1 7.6014 3.7307 2.3781 40 1 8.0566 2.9763 0.8315 41 1 7.3110 6.1583 2.4018 42 1 9.5966 5.2915 2.0196 43 1 9.9088 4.5205 0.4459 44 1 11.8448 6.3176 0.5202 45 1 11.3252 8.0198 0.5448 46 1 11.0935 6.9976 1.9835 47 1 10.5506 5.9590 -1.4378 48 1 8.7861 6.1915 -1.4094 49 1 10.0854 9.5978 -4.3795 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414133567.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:50:00 Heat of formation + Delta-G solvation = -127.963520 kcal Electronic energy + Delta-G solvation = -28929.687155 eV Core-core repulsion = 24891.287690 eV Total energy + Delta-G solvation = -4038.399465 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.48657 -39.69974 -39.52614 -37.83756 -37.24279 -36.48507 -35.16681 -34.62459 -31.91015 -31.48555 -30.04397 -28.39519 -27.41225 -25.46808 -24.51754 -23.68930 -22.80050 -22.04692 -21.70070 -21.27506 -19.21254 -19.02093 -18.21738 -17.84064 -17.28167 -16.86469 -16.70856 -16.39050 -16.25958 -16.13691 -15.99421 -15.69958 -15.35633 -15.17698 -14.81693 -14.65768 -14.46653 -14.43986 -14.28193 -13.65476 -13.32756 -13.20544 -13.03232 -12.96191 -12.70548 -12.50561 -12.44471 -12.30284 -12.13815 -11.96990 -11.89292 -11.84946 -11.81551 -11.61653 -11.38932 -11.36216 -11.13683 -10.80676 -10.57809 -10.38014 -8.99344 -8.31154 -6.33643 0.54947 1.15118 1.30101 1.30786 1.41289 1.96238 2.15069 2.30194 2.89974 3.00840 3.09602 3.49220 3.57270 3.72117 3.80072 3.92332 4.07555 4.10957 4.17096 4.23702 4.36844 4.37513 4.45859 4.52159 4.56760 4.58662 4.62965 4.68307 4.79061 4.83696 4.87369 4.95626 5.00916 5.02666 5.04611 5.17309 5.19163 5.32994 5.42886 5.52012 5.52111 5.83878 5.95039 6.01365 6.30723 6.35073 6.61780 6.72303 6.91524 7.12557 7.29271 8.85660 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.014546 B = 0.002981 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.448708 B = 9391.843773 C =10579.935582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.115 4.115 4 C -0.110 4.110 5 C 0.103 3.897 6 H 0.147 0.853 7 N -0.705 5.705 8 C 0.703 3.297 9 O -0.568 6.568 10 N -0.573 5.573 11 C 0.091 3.909 12 C 0.103 3.897 13 H 0.066 0.934 14 O -0.555 6.555 15 C 0.027 3.973 16 N -0.542 5.542 17 C 0.043 3.957 18 C 0.175 3.825 19 C -0.514 4.514 20 H 0.038 0.962 21 C 0.008 3.992 22 N -0.946 5.946 23 Si 0.942 3.058 24 H -0.269 1.269 25 H -0.276 1.276 26 H -0.253 1.253 27 C 0.515 3.485 28 O -0.497 6.497 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.451 0.549 39 H 0.120 0.880 40 H 0.113 0.887 41 H 0.381 0.619 42 H 0.106 0.894 43 H 0.046 0.954 44 H 0.020 0.980 45 H 0.044 0.956 46 H 0.085 0.915 47 H -0.013 1.013 48 H 0.018 0.982 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.260 -23.395 10.785 31.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.163 4.163 3 C -0.152 4.152 4 C -0.148 4.148 5 C -0.006 4.006 6 H 0.165 0.835 7 N -0.371 5.371 8 C 0.404 3.596 9 O -0.444 6.444 10 N -0.318 5.318 11 C -0.031 4.031 12 C 0.042 3.958 13 H 0.084 0.916 14 O -0.361 6.361 15 C -0.102 4.102 16 N -0.266 5.266 17 C -0.105 4.105 18 C 0.047 3.953 19 C -0.552 4.552 20 H 0.056 0.944 21 C -0.189 4.189 22 N -0.587 5.587 23 Si 0.765 3.235 24 H -0.194 1.194 25 H -0.201 1.201 26 H -0.177 1.177 27 C 0.304 3.696 28 O -0.368 6.368 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.298 0.702 39 H 0.138 0.862 40 H 0.132 0.868 41 H 0.230 0.770 42 H 0.124 0.876 43 H 0.064 0.936 44 H 0.039 0.961 45 H 0.063 0.937 46 H 0.103 0.897 47 H 0.005 0.995 48 H 0.036 0.964 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.254 -22.739 10.274 30.337 hybrid contribution 0.697 -0.450 -0.530 0.985 sum -16.557 -23.190 9.744 30.114 Atomic orbital electron populations 1.21780 0.95517 1.01822 1.02052 1.21511 0.96150 0.96394 1.02245 1.21607 0.92374 0.97809 1.03431 1.21804 0.97859 0.90766 1.04419 1.22250 0.90694 0.98999 0.88637 0.83530 1.45446 1.07454 1.63232 1.20971 1.15923 0.81880 0.78602 0.83229 1.90966 1.84853 1.46701 1.21844 1.46316 1.09224 1.55535 1.20703 1.22454 0.77985 0.98238 1.04400 1.22134 0.91222 0.86326 0.96152 0.91568 1.86640 1.69839 1.54755 1.24828 1.22769 0.94974 0.90687 1.01778 1.61690 1.28280 1.28312 1.08319 1.22195 0.88224 1.00055 1.00027 1.19921 0.94542 0.95166 0.85638 1.21257 1.48613 0.93398 0.91947 0.94388 1.25817 0.94592 0.98338 1.00154 1.70039 1.52213 1.22142 1.14318 0.85799 0.79049 0.80119 0.78518 1.19427 1.20123 1.17653 1.21503 0.92094 0.75332 0.80704 1.90813 1.65494 1.46273 1.34250 0.92734 0.92498 0.92566 0.91883 0.91991 0.90783 0.90542 0.89152 0.90623 0.70176 0.86172 0.86844 0.77019 0.87602 0.93599 0.96136 0.93662 0.89686 0.99535 0.96394 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 71.98 0.71 -0.36 16 2 C -0.13 -0.88 5.93 30.60 0.18 -0.70 16 3 C -0.11 -0.72 5.15 30.59 0.16 -0.56 16 4 C -0.11 -1.03 4.96 30.59 0.15 -0.88 16 5 C 0.10 1.41 3.64 44.37 0.16 1.57 16 6 H 0.15 1.59 8.14 -2.39 -0.02 1.57 16 7 N -0.71 -10.29 6.07 -459.61 -2.79 -13.08 16 8 C 0.70 16.24 8.32 179.44 1.49 17.74 16 9 O -0.57 -16.45 17.27 -3.85 -0.07 -16.52 16 10 N -0.57 -13.48 2.57 -773.11 -1.99 -15.46 16 11 C 0.09 2.09 5.35 86.38 0.46 2.56 16 12 C 0.10 3.18 3.23 30.59 0.10 3.28 16 13 H 0.07 2.55 6.55 -2.38 -0.02 2.54 16 14 O -0.55 -19.02 12.69 -148.98 -1.89 -20.91 16 15 C 0.03 0.82 4.63 86.30 0.40 1.22 16 16 N -0.54 -22.72 4.60 -927.06 -4.27 -26.98 16 17 C 0.04 1.62 9.33 127.69 1.19 2.81 16 18 C 0.17 8.75 3.64 85.56 0.31 9.06 16 19 C -0.51 -31.05 9.09 25.60 0.23 -30.82 16 20 H 0.04 2.55 7.34 -2.91 -0.02 2.53 16 21 C 0.01 0.50 5.47 84.66 0.46 0.96 16 22 N -0.95 -60.95 13.96 21.45 0.30 -60.65 16 23 Si 0.94 46.07 27.47 68.60 1.88 47.95 16 24 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 25 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 26 H -0.25 -11.63 6.54 99.48 0.65 -10.98 16 27 C 0.52 11.73 7.65 87.94 0.67 12.40 16 28 O -0.50 -14.40 17.76 -2.89 -0.05 -14.45 16 29 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.07 0.35 7.69 -2.39 -0.02 0.33 16 35 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 38 H 0.45 4.21 8.62 -92.70 -0.80 3.41 16 39 H 0.12 2.27 7.85 -2.39 -0.02 2.25 16 40 H 0.11 2.32 8.00 -2.39 -0.02 2.30 16 41 H 0.38 10.61 9.04 -74.06 -0.67 9.94 16 42 H 0.11 2.50 7.88 -2.39 -0.02 2.48 16 43 H 0.05 1.33 8.05 -2.39 -0.02 1.31 16 44 H 0.02 0.72 8.13 -2.39 -0.02 0.70 16 45 H 0.04 2.00 6.90 -2.38 -0.02 1.98 16 46 H 0.08 2.53 7.97 -2.39 -0.02 2.51 16 47 H -0.01 -0.64 7.17 -2.39 -0.02 -0.66 16 48 H 0.02 0.92 5.81 -2.39 -0.01 0.91 16 49 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 Total: -1.00 -81.13 398.05 -2.74 -83.88 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -0.57 Total: 17.92 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: 6.69 Total: 18.30 kcal Atomic # 7 Polarization: -107.43 SS G_CDS: -8.74 Total: -116.17 kcal Atomic # 8 Polarization: -49.88 SS G_CDS: -2.01 Total: -51.88 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.88 Total: 47.95 kcal Total: -81.13 -2.74 -83.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414133567.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.085 kcal (2) G-P(sol) polarization free energy of solvation -81.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds