Wall clock time and date at job start Fri Apr 10 2020 14:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.46892 * 2 1 4 4 C 1.52996 * 109.46909 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47283 * 180.02562 * 4 3 2 6 6 H 1.09007 * 110.53402 * 307.83278 * 5 4 3 7 7 N 1.47311 * 110.72982 * 70.74935 * 5 4 3 8 8 C 1.34526 * 106.61818 * 118.37146 * 7 5 4 9 9 O 1.21540 * 123.77000 * 180.20401 * 8 7 5 10 10 N 1.33791 * 112.45834 * 0.38133 * 8 7 5 11 11 C 1.46502 * 124.18050 * 179.86114 * 10 8 7 12 12 C 1.53000 * 109.47208 * 269.70310 * 11 10 8 13 13 H 1.08998 * 109.47026 * 60.00043 * 12 11 10 14 14 O 1.42895 * 109.47150 * 299.99537 * 12 11 10 15 15 C 1.53001 * 109.46979 * 179.97438 * 12 11 10 16 16 N 1.46890 * 109.47159 * 180.46047 * 15 12 11 17 17 C 1.46901 * 111.00259 * 199.85040 * 16 15 12 18 18 C 1.46908 * 111.00150 * 75.89968 * 16 15 12 19 19 C 1.50695 * 109.47080 * 190.00052 * 18 16 15 20 20 H 1.07994 * 120.00373 * 359.97438 * 19 18 16 21 21 C 1.37878 * 119.99538 * 179.97438 * 19 18 16 22 22 N 1.31512 * 120.00420 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00092 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46897 * 89.99554 * 23 21 19 25 25 H 1.48492 * 109.47637 * 210.00081 * 23 21 19 26 26 H 1.48506 * 109.46879 * 330.00307 * 23 21 19 27 27 C 1.34770 * 111.64403 * 359.59744 * 10 8 7 28 28 O 1.21235 * 127.15896 * 180.19376 * 27 10 8 29 29 H 1.08998 * 109.46583 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47423 * 300.00148 * 1 2 3 31 31 H 1.09004 * 109.46751 * 60.00040 * 1 2 3 32 32 H 1.09002 * 109.47128 * 240.00258 * 2 1 3 33 33 H 1.08994 * 109.46713 * 120.00026 * 2 1 3 34 34 H 1.09002 * 109.47023 * 60.00194 * 3 2 1 35 35 H 1.09004 * 109.47643 * 300.00056 * 3 2 1 36 36 H 1.08999 * 109.47635 * 60.00304 * 4 3 2 37 37 H 1.09003 * 109.47392 * 299.99805 * 4 3 2 38 38 H 0.96999 * 126.69331 * 298.62314 * 7 5 4 39 39 H 1.08999 * 109.46894 * 149.69635 * 11 10 8 40 40 H 1.09002 * 109.46439 * 29.70106 * 11 10 8 41 41 H 0.96700 * 114.00136 * 300.00236 * 14 12 11 42 42 H 1.09006 * 109.47339 * 300.46475 * 15 12 11 43 43 H 1.09007 * 109.46946 * 60.46251 * 15 12 11 44 44 H 1.09005 * 109.46749 * 64.82535 * 17 16 15 45 45 H 1.09000 * 109.47538 * 184.82297 * 17 16 15 46 46 H 1.09003 * 109.47343 * 304.82343 * 17 16 15 47 47 H 1.08998 * 109.46612 * 310.00027 * 18 16 15 48 48 H 1.09002 * 109.46848 * 69.99380 * 18 16 15 49 49 H 0.97000 * 120.00862 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0013 6 1 3.6175 3.4545 -0.8050 7 7 3.8250 3.5276 1.3021 8 6 5.0263 3.8548 1.8117 9 8 5.1780 4.4025 2.8860 10 7 6.0352 3.5132 1.0020 11 6 7.4489 3.7525 1.3025 12 6 7.8619 5.1207 0.7563 13 1 7.2549 5.8965 1.2229 14 8 7.6646 5.1481 -0.6587 15 6 9.3383 5.3709 1.0708 16 7 9.7320 6.6891 0.5561 17 6 11.1904 6.7818 0.4065 18 6 9.2218 7.7644 1.4173 19 6 9.4288 9.0933 0.7375 20 1 9.8933 9.1351 -0.2365 21 6 9.0251 10.2558 1.3592 22 7 8.4590 10.2050 2.5452 23 14 9.2823 11.9033 0.5170 24 1 8.0930 12.2267 -0.3113 25 1 9.4730 12.9595 1.5432 26 1 10.4855 11.8331 -0.3506 27 6 5.5905 2.9167 -0.1218 28 8 6.2594 2.4940 -1.0403 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9564 -0.8900 36 1 3.9338 0.9286 -0.8891 37 1 3.9330 0.9288 0.8909 38 1 2.9599 3.6813 1.7129 39 1 8.0559 2.9766 0.8360 40 1 7.5994 3.7316 2.3819 41 1 8.1753 4.4827 -1.1400 42 1 9.4899 5.3419 2.1498 43 1 9.9462 4.5997 0.5976 44 1 11.5232 6.0757 -0.3543 45 1 11.4613 7.7939 0.1061 46 1 11.6690 6.5445 1.3567 47 1 8.1580 7.6107 1.5985 48 1 9.7572 7.7544 2.3667 49 1 8.1747 11.0228 2.9825 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414133573.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:50:09 Heat of formation + Delta-G solvation = -103.079711 kcal Electronic energy + Delta-G solvation = -28772.125221 eV Core-core repulsion = 24734.804799 eV Total energy + Delta-G solvation = -4037.320422 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.51591 -38.62403 -38.07597 -36.96238 -35.82163 -35.46253 -34.27487 -32.45072 -31.22394 -30.21296 -27.54996 -27.20043 -26.37091 -23.90657 -23.67036 -22.51119 -21.77986 -21.54271 -20.41259 -20.04214 -18.19211 -17.26469 -16.75105 -16.46910 -16.05554 -15.97196 -15.47429 -15.33788 -14.97943 -14.75428 -14.59689 -14.52122 -14.19156 -13.99917 -13.79351 -13.60077 -13.36578 -13.13484 -12.63499 -12.51613 -12.01629 -11.92041 -11.72838 -11.69172 -11.47347 -11.43315 -11.21917 -11.06748 -11.02443 -10.87548 -10.81782 -10.59887 -10.38953 -10.27758 -10.16167 -9.72462 -9.67451 -9.33383 -9.07676 -8.37878 -7.18631 -5.96866 -3.97772 1.56377 2.10509 2.95307 2.99552 3.36397 3.41783 3.45456 3.76868 4.15367 4.36335 4.45139 4.53065 4.60662 4.64906 4.73695 4.79508 4.97745 5.00754 5.17099 5.21906 5.29039 5.30009 5.37564 5.39265 5.41199 5.47219 5.56829 5.61465 5.64097 5.68429 5.74937 5.79585 5.87562 6.02508 6.14932 6.34111 6.41108 6.62653 6.75723 6.98388 7.29676 7.32113 7.35903 7.83873 8.05358 8.07720 8.14097 8.24239 8.59137 9.09365 9.65725 11.14061 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.018096 B = 0.002549 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.916444 B =10981.592728 C =11640.552261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.119 4.119 4 C -0.119 4.119 5 C 0.093 3.907 6 H 0.128 0.872 7 N -0.725 5.725 8 C 0.701 3.299 9 O -0.536 6.536 10 N -0.566 5.566 11 C 0.086 3.914 12 C 0.100 3.900 13 H 0.109 0.891 14 O -0.536 6.536 15 C 0.029 3.971 16 N -0.530 5.530 17 C 0.038 3.962 18 C 0.192 3.808 19 C -0.505 4.505 20 H 0.063 0.937 21 C 0.054 3.946 22 N -0.898 5.898 23 Si 0.898 3.102 24 H -0.280 1.280 25 H -0.288 1.288 26 H -0.274 1.274 27 C 0.532 3.468 28 O -0.466 6.466 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.438 0.562 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.366 0.634 42 H 0.037 0.963 43 H 0.063 0.937 44 H 0.044 0.956 45 H 0.077 0.923 46 H 0.008 0.992 47 H 0.030 0.970 48 H -0.010 1.010 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.245 -22.775 -4.356 26.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.157 4.157 4 C -0.157 4.157 5 C -0.016 4.016 6 H 0.145 0.855 7 N -0.391 5.391 8 C 0.401 3.599 9 O -0.408 6.408 10 N -0.311 5.311 11 C -0.036 4.036 12 C 0.039 3.961 13 H 0.127 0.873 14 O -0.340 6.340 15 C -0.101 4.101 16 N -0.254 5.254 17 C -0.110 4.110 18 C 0.067 3.933 19 C -0.543 4.543 20 H 0.081 0.919 21 C -0.148 4.148 22 N -0.538 5.538 23 Si 0.726 3.274 24 H -0.207 1.207 25 H -0.214 1.214 26 H -0.199 1.199 27 C 0.319 3.681 28 O -0.335 6.335 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.093 0.907 38 H 0.282 0.718 39 H 0.114 0.886 40 H 0.122 0.878 41 H 0.212 0.788 42 H 0.055 0.945 43 H 0.082 0.918 44 H 0.063 0.937 45 H 0.096 0.904 46 H 0.027 0.973 47 H 0.048 0.952 48 H 0.007 0.993 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.349 -22.015 -4.431 25.628 hybrid contribution 0.418 0.552 0.626 0.933 sum -11.931 -21.463 -3.805 24.849 Atomic orbital electron populations 1.21779 0.95686 1.01717 1.01937 1.21517 0.96028 0.96407 1.02291 1.21624 0.93780 0.97619 1.02655 1.21837 0.96860 0.92734 1.04305 1.22131 0.93789 0.97148 0.88517 0.85487 1.45523 1.07910 1.64371 1.21251 1.15904 0.81275 0.79040 0.83651 1.91062 1.84292 1.45004 1.20480 1.46174 1.08930 1.55668 1.20342 1.22543 0.77345 1.00068 1.03686 1.22297 0.96746 0.94535 0.82546 0.87319 1.86673 1.70025 1.60192 1.17073 1.22579 0.95118 0.94245 0.98177 1.62006 1.10797 1.01206 1.51421 1.22227 0.88341 1.02522 0.97957 1.19777 0.95304 0.88263 0.89938 1.21141 1.39153 0.90245 1.03791 0.91855 1.25001 0.95438 0.99334 0.94979 1.69962 1.41285 1.28089 1.14454 0.86495 0.78569 0.83285 0.79026 1.20650 1.21385 1.19889 1.20684 0.90160 0.75981 0.81305 1.90771 1.64250 1.45246 1.33244 0.92747 0.92685 0.92631 0.91740 0.91933 0.91679 0.91187 0.89167 0.90673 0.71765 0.88646 0.87799 0.78834 0.94514 0.91831 0.93697 0.90405 0.97317 0.95195 0.99264 0.92970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.91 37.16 0.37 -0.32 16 2 C -0.12 -0.58 5.93 -26.73 -0.16 -0.73 16 3 C -0.12 -0.54 5.15 -26.73 -0.14 -0.68 16 4 C -0.12 -0.70 4.96 -26.73 -0.13 -0.83 16 5 C 0.09 0.75 3.64 -68.20 -0.25 0.51 16 6 H 0.13 0.87 8.14 -51.93 -0.42 0.44 16 7 N -0.73 -6.70 6.07 -59.19 -0.36 -7.06 16 8 C 0.70 9.65 8.62 -88.02 -0.76 8.89 16 9 O -0.54 -9.56 17.48 5.33 0.09 -9.47 16 10 N -0.57 -7.41 2.53 -120.73 -0.31 -7.71 16 11 C 0.09 1.13 5.39 -4.04 -0.02 1.11 16 12 C 0.10 1.69 3.30 -26.73 -0.09 1.60 16 13 H 0.11 2.29 6.78 -51.93 -0.35 1.94 16 14 O -0.54 -9.44 12.59 -35.23 -0.44 -9.88 16 15 C 0.03 0.50 4.66 -3.83 -0.02 0.49 16 16 N -0.53 -11.68 4.56 -244.36 -1.11 -12.79 16 17 C 0.04 0.75 9.37 60.07 0.56 1.31 16 18 C 0.19 5.17 4.55 -4.97 -0.02 5.15 16 19 C -0.50 -14.67 8.39 -34.44 -0.29 -14.96 16 20 H 0.06 1.83 7.16 -52.49 -0.38 1.45 16 21 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 22 N -0.90 -27.55 13.29 55.43 0.74 -26.81 16 23 Si 0.90 22.33 29.54 -169.99 -5.02 17.31 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 26 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 27 C 0.53 6.24 7.18 -10.55 -0.08 6.17 16 28 O -0.47 -6.28 17.70 5.60 0.10 -6.18 16 29 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.28 7.69 -51.93 -0.40 -0.12 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.44 3.02 8.62 -40.82 -0.35 2.67 16 39 H 0.10 1.05 8.00 -51.93 -0.42 0.63 16 40 H 0.10 1.35 7.85 -51.93 -0.41 0.94 16 41 H 0.37 5.29 9.05 45.56 0.41 5.70 16 42 H 0.04 0.65 8.00 -51.93 -0.42 0.23 16 43 H 0.06 0.92 7.94 -51.92 -0.41 0.51 16 44 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.08 1.67 6.66 -51.93 -0.35 1.32 16 46 H 0.01 0.16 8.13 -51.93 -0.42 -0.26 16 47 H 0.03 0.87 6.63 -51.93 -0.34 0.53 16 48 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 49 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 401.96 15.07 6.06 6.06 Total: -1.00 -35.78 401.96 -8.99 -44.77 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -7.62 Total: 2.59 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: -1.12 Total: 9.18 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: -1.04 Total: -54.37 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -0.25 Total: -25.53 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.78 -8.99 -44.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414133573.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.311 kcal (2) G-P(sol) polarization free energy of solvation -35.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds