Wall clock time and date at job start Fri Apr 10 2020 14:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52990 * 109.47363 * 2 1 4 4 C 1.53001 * 109.47329 * 120.00517 * 2 1 3 5 5 C 1.52997 * 109.47456 * 174.99875 * 4 2 1 6 6 H 1.09000 * 109.47349 * 54.99038 * 5 4 2 7 7 N 1.46504 * 109.46947 * 294.99662 * 5 4 2 8 8 C 1.34777 * 120.00029 * 300.00222 * 7 5 4 9 9 O 1.21516 * 119.99911 * 359.97438 * 8 7 5 10 10 O 1.34630 * 120.00150 * 179.97438 * 8 7 5 11 11 C 1.50693 * 109.47174 * 175.00012 * 5 4 2 12 12 O 1.21286 * 120.00527 * 100.00105 * 11 5 4 13 13 N 1.34780 * 119.99690 * 279.99441 * 11 5 4 14 14 C 1.46503 * 119.99987 * 180.02562 * 13 11 5 15 15 C 1.53071 * 109.45178 * 84.78906 * 14 13 11 16 16 C 1.53201 * 109.29371 * 181.24494 * 15 14 13 17 17 N 1.46928 * 108.89275 * 305.57634 * 16 15 14 18 18 C 1.36934 * 120.63265 * 233.51651 * 17 16 15 19 19 H 1.07997 * 119.99862 * 151.82898 * 18 17 16 20 20 C 1.38806 * 120.00015 * 331.83027 * 18 17 16 21 21 N 1.31624 * 120.00191 * 343.08772 * 20 18 17 22 22 Si 1.86800 * 120.00146 * 163.08448 * 20 18 17 23 23 H 1.48503 * 109.47142 * 60.00161 * 22 20 18 24 24 H 1.48498 * 109.47084 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47267 * 300.00095 * 22 20 18 26 26 C 1.46932 * 118.73342 * 53.53882 * 17 16 15 27 27 C 1.53045 * 109.45960 * 205.00187 * 14 13 11 28 28 H 1.09009 * 109.46742 * 300.00022 * 1 2 3 29 29 H 1.08992 * 109.46990 * 59.99685 * 1 2 3 30 30 H 1.08996 * 109.47248 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46742 * 239.99977 * 2 1 3 32 32 H 1.08996 * 109.47488 * 60.00344 * 3 2 1 33 33 H 1.09004 * 109.47561 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.47363 * 300.00017 * 3 2 1 35 35 H 1.08997 * 109.47255 * 54.99187 * 4 2 1 36 36 H 1.09006 * 109.46786 * 294.99924 * 4 2 1 37 37 H 0.96996 * 119.99935 * 119.99677 * 7 5 4 38 38 H 0.96700 * 117.00446 * 179.97438 * 10 8 7 39 39 H 0.96995 * 120.00081 * 359.97438 * 13 11 5 40 40 H 1.09001 * 109.45637 * 324.97326 * 14 13 11 41 41 H 1.09002 * 109.39343 * 61.36736 * 15 14 13 42 42 H 1.09003 * 109.62467 * 301.25963 * 15 14 13 43 43 H 1.09000 * 109.58250 * 185.72113 * 16 15 14 44 44 H 1.08995 * 109.58477 * 65.43833 * 16 15 14 45 45 H 0.96995 * 120.00379 * 180.02562 * 21 20 18 46 46 H 1.08996 * 109.59017 * 66.18099 * 26 17 16 47 47 H 1.09009 * 109.58200 * 186.46074 * 26 17 16 48 48 H 1.09002 * 109.49555 * 58.66185 * 27 14 13 49 49 H 1.08999 * 109.49562 * 298.56688 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 3.5649 -0.8312 1.1879 6 1 3.9955 0.1610 1.0526 7 7 3.9479 -1.6873 0.0625 8 6 3.5271 -2.9669 0.0154 9 8 2.8304 -3.4105 0.9066 10 8 3.8787 -3.7535 -1.0191 11 6 4.0773 -1.4305 2.4721 12 8 4.3699 -2.6066 2.5182 13 7 4.2107 -0.6594 3.5694 14 6 4.7094 -1.2418 4.8178 15 6 6.2401 -1.2411 4.8048 16 6 6.7576 -1.8791 6.0980 17 7 6.1608 -1.1810 7.2448 18 6 6.9519 -0.6645 8.2360 19 1 6.6180 0.1926 8.8019 20 6 8.1830 -1.2425 8.5133 21 7 8.4534 -2.4554 8.0794 22 14 9.4562 -0.2990 9.5024 23 1 8.9022 0.0248 10.8416 24 1 10.6768 -1.1303 9.6590 25 1 9.8021 0.9586 8.7925 26 6 4.6988 -1.0481 7.3081 27 6 4.2041 -0.4162 6.0032 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8901 32 1 1.6768 1.9562 0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6054 -1.7198 1.2951 36 1 1.7517 -0.1584 2.1370 37 1 4.5043 -1.3333 -0.6488 38 1 3.5531 -4.6640 -1.0088 39 1 3.9772 0.2813 3.5325 40 1 4.3497 -2.2667 4.9094 41 1 6.6010 -0.2149 4.7357 42 1 6.5992 -1.8119 3.9485 43 1 7.8431 -1.7899 6.1404 44 1 6.4761 -2.9318 6.1241 45 1 9.3136 -2.8594 8.2735 46 1 4.2474 -2.0325 7.4316 47 1 4.4259 -0.4127 8.1507 48 1 3.1142 -0.4001 5.9971 49 1 4.5840 0.6025 5.9253 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736423951.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:50:55 Heat of formation + Delta-G solvation = -112.563805 kcal Electronic energy + Delta-G solvation = -29502.818314 eV Core-core repulsion = 25465.086631 eV Total energy + Delta-G solvation = -4037.731683 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.86636 -39.32818 -37.72444 -36.84487 -35.79513 -34.45281 -34.18503 -32.16660 -30.35923 -29.81684 -28.98171 -27.50993 -25.44184 -24.51662 -22.66987 -22.21526 -21.52417 -20.27400 -19.94339 -19.42055 -19.13398 -17.41516 -16.91344 -16.55920 -16.24252 -15.72907 -15.20140 -15.05469 -14.73239 -14.68757 -14.22386 -13.92877 -13.51893 -13.51810 -13.47916 -13.02068 -12.83065 -12.73953 -12.51239 -12.40181 -12.34900 -12.03611 -11.56032 -11.47146 -11.15957 -11.11244 -11.06536 -10.97948 -10.88075 -10.70913 -10.40944 -10.36347 -10.23917 -10.05305 -9.97103 -9.73163 -9.62479 -8.98434 -8.64439 -8.39279 -6.66515 -5.76805 -3.20172 2.21396 2.85050 2.92745 3.37823 3.41053 3.45027 3.45909 4.35876 4.48279 4.50569 4.55975 4.69389 4.73705 4.90218 5.07382 5.31703 5.33237 5.35390 5.41111 5.43899 5.48315 5.54136 5.60856 5.66395 5.73022 5.86340 5.90292 5.97848 6.06764 6.11100 6.16770 6.26760 6.39588 6.46628 6.59602 6.63927 6.67275 6.79545 6.95084 6.98387 7.27208 7.39451 7.69280 7.76302 7.80607 8.40105 8.46782 8.53217 9.22573 9.85952 10.43055 11.31717 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.019468 B = 0.002792 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.933775 B =10025.933263 C =10764.095283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.152 4.152 4 C -0.132 4.132 5 C 0.152 3.848 6 H 0.116 0.884 7 N -0.697 5.697 8 C 0.667 3.333 9 O -0.546 6.546 10 O -0.534 6.534 11 C 0.494 3.506 12 O -0.507 6.507 13 N -0.725 5.725 14 C 0.153 3.847 15 C -0.145 4.145 16 C 0.174 3.826 17 N -0.592 5.592 18 C -0.255 4.255 19 H 0.065 0.935 20 C 0.003 3.997 21 N -0.901 5.901 22 Si 0.903 3.097 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.284 1.284 26 C 0.148 3.852 27 C -0.138 4.138 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.408 0.592 38 H 0.427 0.573 39 H 0.392 0.608 40 H 0.080 0.920 41 H 0.054 0.946 42 H 0.051 0.949 43 H 0.088 0.912 44 H 0.020 0.980 45 H 0.255 0.745 46 H 0.020 0.980 47 H 0.058 0.942 48 H 0.055 0.945 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.523 7.133 -20.213 25.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.210 4.210 4 C -0.170 4.170 5 C 0.044 3.956 6 H 0.133 0.867 7 N -0.357 5.357 8 C 0.419 3.581 9 O -0.432 6.432 10 O -0.345 6.345 11 C 0.277 3.723 12 O -0.380 6.380 13 N -0.377 5.377 14 C 0.050 3.950 15 C -0.185 4.185 16 C 0.048 3.952 17 N -0.315 5.315 18 C -0.385 4.385 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.545 5.545 22 Si 0.733 3.267 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.021 3.979 27 C -0.178 4.178 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.114 0.886 36 H 0.098 0.902 37 H 0.243 0.757 38 H 0.286 0.714 39 H 0.225 0.775 40 H 0.098 0.902 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.106 0.894 44 H 0.038 0.962 45 H 0.065 0.935 46 H 0.038 0.962 47 H 0.076 0.924 48 H 0.074 0.926 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.347 6.255 -19.719 24.619 hybrid contribution 0.753 0.497 0.152 0.915 sum -12.594 6.753 -19.567 24.229 Atomic orbital electron populations 1.21811 0.94920 1.01894 1.01741 1.21079 0.96015 0.96015 0.98080 1.21949 1.00926 0.95958 1.02126 1.22097 0.92370 1.03741 0.98821 1.20951 0.97089 0.93050 0.84517 0.86653 1.44049 1.56661 1.09015 1.25975 1.17642 0.78886 0.81852 0.79736 1.91062 1.40681 1.73492 1.37984 1.84122 1.74731 1.28797 1.46829 1.20720 0.78872 0.87400 0.85310 1.90777 1.47883 1.15472 1.83915 1.46272 1.67258 1.12719 1.11429 1.21014 0.94831 0.97888 0.81309 1.22550 0.93994 1.01188 1.00784 1.20740 0.99461 0.92753 0.82279 1.44090 0.99379 1.66260 1.21784 1.19128 0.99172 1.07937 1.12245 0.91693 1.25071 1.00072 0.95191 0.99287 1.70029 1.22901 1.12412 1.49207 0.86366 0.81156 0.79221 0.79982 1.20874 1.21646 1.21059 1.20841 0.86250 0.97244 0.93567 1.22320 0.99011 0.99791 0.96635 0.92515 0.92715 0.92662 0.91133 0.92296 0.92615 0.92603 0.88630 0.90237 0.75671 0.71353 0.77455 0.90160 0.92762 0.93030 0.89354 0.96218 0.93523 0.96238 0.92360 0.92630 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.19 37.16 0.34 -0.67 16 2 C -0.09 -0.66 2.86 -90.62 -0.26 -0.92 16 3 C -0.15 -0.84 8.95 37.15 0.33 -0.50 16 4 C -0.13 -1.23 4.01 -26.73 -0.11 -1.33 16 5 C 0.15 1.52 2.88 -69.08 -0.20 1.32 16 6 H 0.12 0.77 6.34 -51.93 -0.33 0.44 16 7 N -0.70 -7.03 4.57 -59.87 -0.27 -7.30 16 8 C 0.67 8.63 7.88 54.06 0.43 9.05 16 9 O -0.55 -9.21 12.99 -27.10 -0.35 -9.56 16 10 O -0.53 -5.29 13.48 -40.30 -0.54 -5.83 16 11 C 0.49 7.32 6.78 -10.99 -0.07 7.25 16 12 O -0.51 -10.11 13.34 -17.94 -0.24 -10.35 16 13 N -0.73 -9.97 5.08 -53.75 -0.27 -10.24 16 14 C 0.15 2.70 2.41 -67.87 -0.16 2.54 16 15 C -0.14 -2.93 5.66 -26.59 -0.15 -3.08 16 16 C 0.17 4.31 5.30 -3.71 -0.02 4.29 16 17 N -0.59 -14.95 3.00 -172.31 -0.52 -15.47 16 18 C -0.26 -7.01 9.58 -15.06 -0.14 -7.16 16 19 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 20 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 21 N -0.90 -26.62 11.20 55.49 0.62 -26.00 16 22 Si 0.90 21.74 29.59 -169.99 -5.03 16.71 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 C 0.15 3.09 6.52 -3.71 -0.02 3.07 16 27 C -0.14 -2.30 5.55 -26.61 -0.15 -2.44 16 28 H 0.06 0.38 8.14 -51.92 -0.42 -0.05 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.53 7.62 -51.92 -0.40 0.13 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.05 0.26 6.46 -51.93 -0.34 -0.07 16 34 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.10 1.21 6.04 -51.93 -0.31 0.89 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.41 2.93 8.94 -40.82 -0.36 2.57 16 38 H 0.43 2.59 9.11 45.56 0.42 3.01 16 39 H 0.39 4.03 8.60 -40.82 -0.35 3.68 16 40 H 0.08 1.66 7.58 -51.93 -0.39 1.26 16 41 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.09 2.43 6.06 -51.93 -0.31 2.12 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 1.17 7.93 -51.92 -0.41 0.75 16 48 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 49 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 385.64 15.07 5.81 5.81 Total: -1.00 -36.37 385.64 -8.49 -44.86 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -7.42 Total: 5.98 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: -0.28 Total: 11.39 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: -0.44 Total: -59.01 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -1.13 Total: -25.74 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.37 -8.49 -44.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736423951.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.702 kcal (2) G-P(sol) polarization free energy of solvation -36.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds