Wall clock time and date at job start Fri Apr 10 2020 14:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52990 * 109.47363 * 2 1 4 4 C 1.53001 * 109.47329 * 120.00517 * 2 1 3 5 5 C 1.52997 * 109.47456 * 174.99875 * 4 2 1 6 6 H 1.09000 * 109.47349 * 54.99038 * 5 4 2 7 7 N 1.46504 * 109.46947 * 294.99662 * 5 4 2 8 8 C 1.34777 * 120.00029 * 300.00222 * 7 5 4 9 9 O 1.21516 * 119.99911 * 359.97438 * 8 7 5 10 10 O 1.34630 * 120.00150 * 179.97438 * 8 7 5 11 11 C 1.50693 * 109.47174 * 175.00012 * 5 4 2 12 12 O 1.21286 * 120.00527 * 100.00105 * 11 5 4 13 13 N 1.34780 * 119.99690 * 279.99441 * 11 5 4 14 14 C 1.46503 * 119.99987 * 180.02562 * 13 11 5 15 15 C 1.53071 * 109.45178 * 84.78906 * 14 13 11 16 16 C 1.53201 * 109.29371 * 181.24494 * 15 14 13 17 17 N 1.46928 * 108.89275 * 305.57634 * 16 15 14 18 18 C 1.36934 * 120.63265 * 233.51651 * 17 16 15 19 19 H 1.07997 * 119.99862 * 151.82898 * 18 17 16 20 20 C 1.38806 * 120.00015 * 331.83027 * 18 17 16 21 21 N 1.31624 * 120.00191 * 343.08772 * 20 18 17 22 22 Si 1.86800 * 120.00146 * 163.08448 * 20 18 17 23 23 H 1.48503 * 109.47142 * 60.00161 * 22 20 18 24 24 H 1.48498 * 109.47084 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47267 * 300.00095 * 22 20 18 26 26 C 1.46932 * 118.73342 * 53.53882 * 17 16 15 27 27 C 1.53045 * 109.45960 * 205.00187 * 14 13 11 28 28 H 1.09009 * 109.46742 * 300.00022 * 1 2 3 29 29 H 1.08992 * 109.46990 * 59.99685 * 1 2 3 30 30 H 1.08996 * 109.47248 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46742 * 239.99977 * 2 1 3 32 32 H 1.08996 * 109.47488 * 60.00344 * 3 2 1 33 33 H 1.09004 * 109.47561 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.47363 * 300.00017 * 3 2 1 35 35 H 1.08997 * 109.47255 * 54.99187 * 4 2 1 36 36 H 1.09006 * 109.46786 * 294.99924 * 4 2 1 37 37 H 0.96996 * 119.99935 * 119.99677 * 7 5 4 38 38 H 0.96700 * 117.00446 * 179.97438 * 10 8 7 39 39 H 0.96995 * 120.00081 * 359.97438 * 13 11 5 40 40 H 1.09001 * 109.45637 * 324.97326 * 14 13 11 41 41 H 1.09002 * 109.39343 * 61.36736 * 15 14 13 42 42 H 1.09003 * 109.62467 * 301.25963 * 15 14 13 43 43 H 1.09000 * 109.58250 * 185.72113 * 16 15 14 44 44 H 1.08995 * 109.58477 * 65.43833 * 16 15 14 45 45 H 0.96995 * 120.00379 * 180.02562 * 21 20 18 46 46 H 1.08996 * 109.59017 * 66.18099 * 26 17 16 47 47 H 1.09009 * 109.58200 * 186.46074 * 26 17 16 48 48 H 1.09002 * 109.49555 * 58.66185 * 27 14 13 49 49 H 1.08999 * 109.49562 * 298.56688 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 3.5649 -0.8312 1.1879 6 1 3.9955 0.1610 1.0526 7 7 3.9479 -1.6873 0.0625 8 6 3.5271 -2.9669 0.0154 9 8 2.8304 -3.4105 0.9066 10 8 3.8787 -3.7535 -1.0191 11 6 4.0773 -1.4305 2.4721 12 8 4.3699 -2.6066 2.5182 13 7 4.2107 -0.6594 3.5694 14 6 4.7094 -1.2418 4.8178 15 6 6.2401 -1.2411 4.8048 16 6 6.7576 -1.8791 6.0980 17 7 6.1608 -1.1810 7.2448 18 6 6.9519 -0.6645 8.2360 19 1 6.6180 0.1926 8.8019 20 6 8.1830 -1.2425 8.5133 21 7 8.4534 -2.4554 8.0794 22 14 9.4562 -0.2990 9.5024 23 1 8.9022 0.0248 10.8416 24 1 10.6768 -1.1303 9.6590 25 1 9.8021 0.9586 8.7925 26 6 4.6988 -1.0481 7.3081 27 6 4.2041 -0.4162 6.0032 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8901 32 1 1.6768 1.9562 0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6054 -1.7198 1.2951 36 1 1.7517 -0.1584 2.1370 37 1 4.5043 -1.3333 -0.6488 38 1 3.5531 -4.6640 -1.0088 39 1 3.9772 0.2813 3.5325 40 1 4.3497 -2.2667 4.9094 41 1 6.6010 -0.2149 4.7357 42 1 6.5992 -1.8119 3.9485 43 1 7.8431 -1.7899 6.1404 44 1 6.4761 -2.9318 6.1241 45 1 9.3136 -2.8594 8.2735 46 1 4.2474 -2.0325 7.4316 47 1 4.4259 -0.4127 8.1507 48 1 3.1142 -0.4001 5.9971 49 1 4.5840 0.6025 5.9253 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736423951.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:50:54 Heat of formation + Delta-G solvation = -140.846711 kcal Electronic energy + Delta-G solvation = -29504.044753 eV Core-core repulsion = 25465.086631 eV Total energy + Delta-G solvation = -4038.958122 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.86820 -40.50819 -39.07329 -37.89997 -36.71322 -35.96642 -35.11575 -33.93094 -31.92392 -31.44090 -30.16171 -27.94769 -27.04782 -25.67361 -24.01572 -23.90974 -22.86174 -21.35171 -20.91469 -20.61886 -20.23310 -18.87929 -18.29313 -17.65230 -17.42663 -16.87861 -16.58052 -16.11442 -16.02469 -15.62291 -15.50362 -15.36591 -15.13241 -14.80158 -14.55526 -14.40537 -14.19625 -14.05644 -13.54690 -13.25971 -13.20390 -13.01183 -13.00233 -12.70470 -12.64466 -12.55684 -12.38043 -12.13022 -12.07864 -11.88439 -11.81803 -11.72805 -11.56378 -11.50879 -11.44096 -11.31771 -10.95739 -10.57806 -10.10545 -9.90364 -8.72370 -7.87735 -5.34922 1.36671 1.47748 1.50508 1.57464 1.75022 1.92271 2.29022 2.51685 3.27941 3.60237 3.64815 3.70495 3.86912 3.90211 3.99733 4.09868 4.12779 4.18758 4.33596 4.46906 4.49961 4.65974 4.70828 4.79924 4.82331 4.87190 4.92048 5.04088 5.06634 5.07855 5.12139 5.12854 5.15177 5.30847 5.31127 5.36183 5.44987 5.50209 5.58468 5.59241 5.63489 5.68212 5.88164 6.37716 6.46128 6.65923 7.12373 7.36749 7.58780 7.83267 8.36689 9.19337 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.019468 B = 0.002792 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.933775 B =10025.933263 C =10764.095283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.151 4.151 4 C -0.126 4.126 5 C 0.160 3.840 6 H 0.162 0.838 7 N -0.685 5.685 8 C 0.661 3.339 9 O -0.591 6.591 10 O -0.527 6.527 11 C 0.488 3.512 12 O -0.563 6.563 13 N -0.708 5.708 14 C 0.165 3.835 15 C -0.127 4.127 16 C 0.183 3.817 17 N -0.609 5.609 18 C -0.263 4.263 19 H 0.076 0.924 20 C -0.056 4.056 21 N -0.941 5.941 22 Si 0.972 3.028 23 H -0.273 1.273 24 H -0.298 1.298 25 H -0.274 1.274 26 C 0.140 3.860 27 C -0.120 4.120 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.038 0.962 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.091 0.909 37 H 0.425 0.575 38 H 0.441 0.559 39 H 0.416 0.584 40 H 0.045 0.955 41 H 0.067 0.933 42 H 0.041 0.959 43 H 0.055 0.945 44 H -0.018 1.018 45 H 0.249 0.751 46 H 0.005 0.995 47 H 0.069 0.931 48 H 0.090 0.910 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.415 10.808 -21.464 28.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.105 4.105 3 C -0.208 4.208 4 C -0.164 4.164 5 C 0.052 3.948 6 H 0.179 0.821 7 N -0.347 5.347 8 C 0.413 3.587 9 O -0.480 6.480 10 O -0.339 6.339 11 C 0.273 3.727 12 O -0.440 6.440 13 N -0.361 5.361 14 C 0.059 3.941 15 C -0.167 4.167 16 C 0.057 3.943 17 N -0.332 5.332 18 C -0.393 4.393 19 H 0.093 0.907 20 C -0.251 4.251 21 N -0.587 5.587 22 Si 0.800 3.200 23 H -0.198 1.198 24 H -0.225 1.225 25 H -0.200 1.200 26 C 0.014 3.986 27 C -0.159 4.159 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.110 0.890 37 H 0.263 0.737 38 H 0.303 0.697 39 H 0.253 0.747 40 H 0.063 0.937 41 H 0.085 0.915 42 H 0.060 0.940 43 H 0.073 0.927 44 H 0.000 1.000 45 H 0.058 0.942 46 H 0.023 0.977 47 H 0.088 0.912 48 H 0.108 0.892 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.273 10.000 -21.018 27.303 hybrid contribution 0.967 -0.733 0.528 1.323 sum -13.306 9.267 -20.489 26.129 Atomic orbital electron populations 1.21819 0.95016 1.01101 1.02507 1.21019 0.95905 0.97033 0.96517 1.21946 1.01727 0.94293 1.02810 1.22040 0.91460 1.02237 1.00683 1.21114 0.97655 0.94214 0.81804 0.82055 1.44050 1.56196 1.08165 1.26252 1.17967 0.78441 0.82718 0.79553 1.91044 1.42711 1.74546 1.39749 1.84107 1.74394 1.29781 1.45583 1.21663 0.77572 0.86765 0.86714 1.90769 1.50197 1.18117 1.84904 1.45946 1.66509 1.13813 1.09844 1.20572 0.92829 0.96857 0.83811 1.22273 0.96041 1.00907 0.97480 1.20443 0.97679 0.91336 0.84874 1.44346 1.01239 1.66091 1.21555 1.19561 0.99571 1.07949 1.12191 0.90667 1.25923 1.02215 0.95947 1.00989 1.70218 1.22996 1.14240 1.51233 0.85275 0.78089 0.77829 0.78853 1.19832 1.22486 1.19973 1.21053 0.83718 0.97204 0.96601 1.22116 1.00959 0.99614 0.93214 0.92093 0.91599 0.94280 0.91563 0.91678 0.91316 0.91962 0.92284 0.89016 0.73728 0.69719 0.74681 0.93706 0.91463 0.94013 0.92652 1.00031 0.94199 0.97691 0.91240 0.89185 0.90029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.19 71.98 0.66 -1.11 16 2 C -0.09 -0.99 2.86 -10.80 -0.03 -1.02 16 3 C -0.15 -1.01 8.95 71.98 0.64 -0.37 16 4 C -0.13 -2.08 4.01 30.59 0.12 -1.96 16 5 C 0.16 2.77 2.88 44.24 0.13 2.90 16 6 H 0.16 1.33 6.34 -2.39 -0.02 1.32 16 7 N -0.68 -12.60 4.57 -573.74 -2.62 -15.23 16 8 C 0.66 16.91 7.88 129.79 1.02 17.93 16 9 O -0.59 -20.53 12.99 27.26 0.35 -20.17 16 10 O -0.53 -10.11 13.48 -55.39 -0.75 -10.85 16 11 C 0.49 13.81 6.78 87.65 0.59 14.41 16 12 O -0.56 -22.85 13.34 19.42 0.26 -22.59 16 13 N -0.71 -17.75 5.08 -442.34 -2.25 -19.99 16 14 C 0.16 5.67 2.41 45.03 0.11 5.78 16 15 C -0.13 -5.14 5.66 30.69 0.17 -4.97 16 16 C 0.18 9.47 5.30 86.37 0.46 9.93 16 17 N -0.61 -31.09 3.00 -699.07 -2.09 -33.18 16 18 C -0.26 -14.44 9.58 84.03 0.81 -13.64 16 19 H 0.08 3.91 7.88 -2.91 -0.02 3.89 16 20 C -0.06 -3.16 4.92 84.86 0.42 -2.74 16 21 N -0.94 -57.69 11.20 21.65 0.24 -57.44 16 22 Si 0.97 45.02 29.59 68.60 2.03 47.04 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 24 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 25 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 26 C 0.14 5.74 6.52 86.36 0.56 6.31 16 27 C -0.12 -3.68 5.55 30.67 0.17 -3.51 16 28 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 30 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 0.83 7.62 -2.38 -0.02 0.81 16 32 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.07 0.29 6.46 -2.38 -0.02 0.27 16 34 H 0.06 0.38 8.14 -2.38 -0.02 0.36 16 35 H 0.06 1.48 6.04 -2.39 -0.01 1.47 16 36 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.42 4.94 8.94 -92.71 -0.83 4.11 16 38 H 0.44 5.29 9.11 -74.06 -0.67 4.61 16 39 H 0.42 6.68 8.60 -92.71 -0.80 5.89 16 40 H 0.04 1.90 7.58 -2.39 -0.02 1.88 16 41 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 42 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.06 3.20 6.06 -2.39 -0.01 3.19 16 44 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 45 H 0.25 14.84 8.31 -92.71 -0.77 14.06 16 46 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 47 H 0.07 2.67 7.93 -2.38 -0.02 2.65 16 48 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 49 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -84.49 385.64 -0.31 -84.80 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: -1.32 Total: 19.66 kcal Atomic # 6 Polarization: 22.12 SS G_CDS: 5.84 Total: 27.95 kcal Atomic # 7 Polarization: -119.12 SS G_CDS: -6.72 Total: -125.84 kcal Atomic # 8 Polarization: -53.48 SS G_CDS: -0.13 Total: -53.61 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -84.49 -0.31 -84.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736423951.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.047 kcal (2) G-P(sol) polarization free energy of solvation -84.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds