Wall clock time and date at job start Fri Apr 10 2020 14:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21280 * 120.00021 * 2 1 4 4 N 1.34780 * 120.00023 * 180.02562 * 2 1 3 5 5 C 1.46497 * 119.99870 * 179.97438 * 4 2 1 6 6 H 1.09005 * 109.46975 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47297 * 300.00084 * 5 4 2 8 8 C 1.53003 * 109.47034 * 295.00171 * 7 5 4 9 9 C 1.52999 * 109.47030 * 175.00149 * 8 7 5 10 10 C 1.52999 * 109.46946 * 294.99806 * 8 7 5 11 11 C 1.50701 * 109.47214 * 60.00134 * 5 4 2 12 12 O 1.21284 * 120.00039 * 339.99964 * 11 5 4 13 13 N 1.34777 * 120.00205 * 160.00014 * 11 5 4 14 14 C 1.46504 * 120.00080 * 180.02562 * 13 11 5 15 15 H 1.08995 * 110.91676 * 37.44772 * 14 13 11 16 16 C 1.54912 * 111.00199 * 273.54221 * 14 13 11 17 17 N 1.47419 * 104.82985 * 204.91508 * 16 14 13 18 18 C 1.36942 * 125.64839 * 204.08990 * 17 16 14 19 19 H 1.07992 * 119.99706 * 6.65716 * 18 17 16 20 20 C 1.38812 * 119.99928 * 186.65061 * 18 17 16 21 21 N 1.31619 * 119.99814 * 7.38075 * 20 18 17 22 22 Si 1.86804 * 119.99683 * 187.38332 * 20 18 17 23 23 H 1.48500 * 109.46845 * 265.01760 * 22 20 18 24 24 H 1.48500 * 109.46905 * 145.01852 * 22 20 18 25 25 H 1.48502 * 109.47029 * 25.01940 * 22 20 18 26 26 C 1.47026 * 108.70506 * 24.36095 * 17 16 14 27 27 C 1.54336 * 107.26214 * 358.57986 * 26 17 16 28 28 H 1.09004 * 110.51446 * 96.45669 * 27 26 17 29 29 O 1.42898 * 111.00273 * 219.59851 * 27 26 17 30 30 H 1.09000 * 109.46989 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46908 * 299.99309 * 1 2 3 32 32 H 1.08998 * 109.47128 * 59.99514 * 1 2 3 33 33 H 0.97000 * 119.99897 * 359.97438 * 4 2 1 34 34 H 1.09000 * 109.47089 * 55.00249 * 7 5 4 35 35 H 1.08996 * 109.47217 * 175.00049 * 7 5 4 36 36 H 1.08994 * 109.47097 * 54.99398 * 8 7 5 37 37 H 1.09004 * 109.47329 * 60.00000 * 9 8 7 38 38 H 1.09003 * 109.47001 * 179.97438 * 9 8 7 39 39 H 1.08998 * 109.47049 * 299.99759 * 9 8 7 40 40 H 1.09003 * 109.47273 * 180.02562 * 10 8 7 41 41 H 1.09004 * 109.47387 * 299.99984 * 10 8 7 42 42 H 1.09005 * 109.46928 * 60.00304 * 10 8 7 43 43 H 0.97004 * 120.00067 * 359.97438 * 13 11 5 44 44 H 1.09002 * 110.36476 * 86.08061 * 16 14 13 45 45 H 1.08992 * 110.46051 * 323.80585 * 16 14 13 46 46 H 0.96999 * 119.99355 * 179.97438 * 21 20 18 47 47 H 1.08999 * 109.88022 * 118.12904 * 26 17 16 48 48 H 1.08996 * 109.87722 * 239.29473 * 26 17 16 49 49 H 0.96697 * 114.00522 * 293.79046 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 1 4.0092 -2.1949 -0.0010 7 6 4.1554 -0.4456 -1.2503 8 6 3.7501 -1.2355 -2.4964 9 6 4.1498 -0.4528 -3.7488 10 6 4.4598 -2.5910 -2.4942 11 6 4.1487 -0.4571 1.2294 12 8 3.4205 0.3043 1.8303 13 7 5.4076 -0.6680 1.6620 14 6 5.8962 0.0220 2.8585 15 1 5.1104 0.1023 3.6096 16 6 6.4672 1.4169 2.5008 17 7 7.4279 1.7187 3.5775 18 6 7.8289 2.9705 3.9615 19 1 7.3557 3.8432 3.5364 20 6 8.8436 3.1176 4.8973 21 7 9.5186 2.0646 5.3071 22 14 9.2508 4.8101 5.5750 23 1 10.3678 5.4001 4.7944 24 1 9.6521 4.6894 6.9996 25 1 8.0563 5.6860 5.4697 26 6 7.8892 0.4529 4.1663 27 6 7.1483 -0.6881 3.4375 28 1 7.7661 -1.0945 2.6367 29 8 6.7679 -1.7180 4.3522 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 1.6959 -2.0073 -0.0005 34 1 3.7208 0.5529 -1.2958 35 1 5.2417 -0.3674 -1.2071 36 1 2.6713 -1.3903 -2.4935 37 1 5.2288 -0.2980 -3.7516 38 1 3.8615 -1.0157 -4.6366 39 1 3.6443 0.5129 -3.7504 40 1 4.1715 -3.1536 -3.3822 41 1 5.5388 -2.4363 -2.4970 42 1 4.1750 -3.1487 -1.6019 43 1 5.9899 -1.2772 1.1817 44 1 5.6701 2.1602 2.4844 45 1 6.9751 1.3849 1.5370 46 1 10.2278 2.1676 5.9608 47 1 8.9650 0.3488 4.0250 48 1 7.6488 0.4292 5.2291 49 1 7.5144 -2.1928 4.7426 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197974299.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:51:03 Heat of formation + Delta-G solvation = -100.646874 kcal Electronic energy + Delta-G solvation = -29628.588133 eV Core-core repulsion = 25591.373206 eV Total energy + Delta-G solvation = -4037.214927 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.58640 -38.89720 -37.62383 -36.76087 -35.05350 -34.12873 -33.88883 -31.74861 -30.84820 -28.75687 -28.06595 -27.43422 -26.95609 -24.83092 -23.92628 -21.43422 -20.60489 -20.36163 -20.09519 -19.49267 -17.63545 -17.30693 -16.81228 -16.55440 -15.99534 -15.56812 -15.33081 -14.74800 -14.62495 -14.51683 -14.21808 -13.95480 -13.68601 -13.63014 -13.15239 -12.88711 -12.67292 -12.63903 -12.57265 -12.41266 -12.35320 -12.03757 -12.03033 -11.85932 -11.46317 -11.20478 -11.02354 -11.00260 -10.89430 -10.84222 -10.78326 -10.15437 -10.00051 -9.86180 -9.76319 -9.52619 -9.40419 -8.80947 -8.75187 -8.57480 -6.85849 -5.72521 -3.08085 2.69260 2.90739 3.09754 3.41703 3.47314 3.49851 3.53208 4.45575 4.54268 4.60314 4.64348 4.66933 4.82452 4.87800 4.99098 5.04517 5.17993 5.24219 5.33207 5.39332 5.45322 5.47312 5.51379 5.59349 5.61952 5.67870 5.71897 5.73238 5.81792 5.85724 5.99623 6.09438 6.13406 6.18311 6.19729 6.36385 6.61593 6.72976 6.96849 7.32637 7.46357 7.49925 7.73780 7.80052 8.10346 8.21563 8.34086 8.57216 9.18349 9.79070 10.42660 11.38140 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.014951 B = 0.003075 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.273604 B = 9104.649761 C = 9362.620221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.513 3.487 3 O -0.509 6.509 4 N -0.722 5.722 5 C 0.135 3.865 6 H 0.106 0.894 7 C -0.129 4.129 8 C -0.091 4.091 9 C -0.147 4.147 10 C -0.152 4.152 11 C 0.499 3.501 12 O -0.508 6.508 13 N -0.718 5.718 14 C 0.144 3.856 15 H 0.099 0.901 16 C 0.131 3.869 17 N -0.599 5.599 18 C -0.226 4.226 19 H 0.080 0.920 20 C -0.008 4.008 21 N -0.923 5.923 22 Si 0.914 3.086 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.149 3.851 27 C 0.070 3.930 28 H 0.058 0.942 29 O -0.564 6.564 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.401 0.599 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.394 0.606 44 H 0.051 0.949 45 H 0.023 0.977 46 H 0.252 0.748 47 H 0.066 0.934 48 H 0.044 0.956 49 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.916 -14.953 -16.013 25.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.300 3.700 3 O -0.383 6.383 4 N -0.376 5.376 5 C 0.026 3.974 6 H 0.124 0.876 7 C -0.168 4.168 8 C -0.110 4.110 9 C -0.204 4.204 10 C -0.209 4.209 11 C 0.282 3.718 12 O -0.381 6.381 13 N -0.370 5.370 14 C 0.038 3.962 15 H 0.117 0.883 16 C 0.003 3.997 17 N -0.327 5.327 18 C -0.354 4.354 19 H 0.098 0.902 20 C -0.204 4.204 21 N -0.571 5.571 22 Si 0.744 3.256 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.024 3.976 27 C 0.010 3.990 28 H 0.076 0.924 29 O -0.369 6.369 30 H 0.090 0.910 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.235 0.765 34 H 0.112 0.888 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.228 0.772 44 H 0.069 0.931 45 H 0.040 0.960 46 H 0.062 0.938 47 H 0.083 0.917 48 H 0.062 0.938 49 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -13.492 -13.281 -15.569 24.511 hybrid contribution 1.025 -0.149 0.404 1.112 sum -12.467 -13.430 -15.165 23.786 Atomic orbital electron populations 1.21818 0.92232 1.03646 1.05088 1.20616 0.90187 0.83645 0.75581 1.90748 1.70005 1.31092 1.46409 1.45736 1.05345 1.09025 1.77500 1.20892 0.81931 1.00670 0.93899 0.87650 1.22025 1.01615 1.01444 0.91682 1.21053 1.00364 0.95038 0.94506 1.21818 1.01704 1.00076 0.96824 1.21944 1.00872 0.96579 1.01483 1.20785 0.82092 0.82905 0.86015 1.90763 1.55766 1.34868 1.56669 1.45899 1.13797 1.47532 1.29738 1.22157 0.95692 0.92198 0.86133 0.88310 1.21834 0.92657 0.93197 0.91977 1.44252 1.48722 1.02378 1.37299 1.19108 1.13986 0.82621 1.19720 0.90209 1.24803 0.97767 0.97665 1.00191 1.69915 1.24499 1.27566 1.35130 0.86066 0.78123 0.83200 0.78221 1.21602 1.21602 1.20509 1.21857 0.97490 0.82438 0.95849 1.23445 0.94952 0.89169 0.91439 0.92417 1.86459 1.36893 1.50882 1.62689 0.91048 0.88837 0.89161 0.76520 0.88764 0.90606 0.91180 0.92525 0.92826 0.92624 0.92738 0.92369 0.92701 0.77247 0.93109 0.95972 0.93750 0.91651 0.93789 0.77722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 10.39 36.01 0.37 -0.99 16 2 C 0.51 6.43 6.70 -10.98 -0.07 6.35 16 3 O -0.51 -9.09 12.96 -17.93 -0.23 -9.33 16 4 N -0.72 -6.99 4.57 -54.93 -0.25 -7.25 16 5 C 0.14 1.45 2.87 -69.09 -0.20 1.25 16 6 H 0.11 0.79 6.35 -51.93 -0.33 0.46 16 7 C -0.13 -1.37 4.01 -26.73 -0.11 -1.48 16 8 C -0.09 -0.72 2.86 -90.62 -0.26 -0.98 16 9 C -0.15 -1.17 9.19 37.16 0.34 -0.83 16 10 C -0.15 -0.94 8.95 37.16 0.33 -0.61 16 11 C 0.50 7.93 6.82 -10.98 -0.07 7.85 16 12 O -0.51 -10.56 13.43 -17.94 -0.24 -10.80 16 13 N -0.72 -10.93 5.23 -51.73 -0.27 -11.20 16 14 C 0.14 2.81 3.04 -65.78 -0.20 2.61 16 15 H 0.10 2.24 7.73 -51.93 -0.40 1.84 16 16 C 0.13 2.97 6.93 -2.53 -0.02 2.96 16 17 N -0.60 -15.88 3.39 -170.07 -0.58 -16.46 16 18 C -0.23 -6.54 10.26 -15.06 -0.15 -6.69 16 19 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 20 C -0.01 -0.24 5.45 -17.43 -0.09 -0.33 16 21 N -0.92 -27.14 10.48 55.49 0.58 -26.56 16 22 Si 0.91 22.63 29.56 -169.99 -5.02 17.60 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 C 0.15 3.61 5.21 -3.06 -0.02 3.60 16 27 C 0.07 1.31 3.94 -24.89 -0.10 1.21 16 28 H 0.06 0.94 8.00 -51.93 -0.42 0.53 16 29 O -0.56 -9.71 13.40 -35.23 -0.47 -10.18 16 30 H 0.07 0.35 7.91 -51.93 -0.41 -0.06 16 31 H 0.09 0.83 8.14 -51.92 -0.42 0.41 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.40 2.38 8.67 -40.82 -0.35 2.02 16 34 H 0.09 1.33 6.04 -51.93 -0.31 1.02 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.54 7.62 -51.93 -0.40 0.15 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.05 0.29 6.46 -51.93 -0.34 -0.04 16 43 H 0.39 4.65 8.51 -40.82 -0.35 4.30 16 44 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 47 H 0.07 1.71 6.99 -51.93 -0.36 1.34 16 48 H 0.04 1.19 7.83 -51.93 -0.41 0.78 16 49 H 0.38 4.87 9.12 45.56 0.42 5.28 16 LS Contribution 389.77 15.07 5.87 5.87 Total: -1.00 -37.92 389.77 -8.29 -46.21 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -7.43 Total: 8.17 kcal Atomic # 6 Polarization: 14.16 SS G_CDS: -0.25 Total: 13.92 kcal Atomic # 7 Polarization: -60.95 SS G_CDS: -0.52 Total: -61.47 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.95 Total: -30.31 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.92 -8.29 -46.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197974299.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.435 kcal (2) G-P(sol) polarization free energy of solvation -37.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds