Wall clock time and date at job start Fri Apr 10 2020 14:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21280 * 120.00021 * 2 1 4 4 N 1.34780 * 120.00023 * 180.02562 * 2 1 3 5 5 C 1.46497 * 119.99870 * 179.97438 * 4 2 1 6 6 H 1.09005 * 109.46975 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47297 * 300.00084 * 5 4 2 8 8 C 1.53003 * 109.47034 * 295.00171 * 7 5 4 9 9 C 1.52999 * 109.47030 * 175.00149 * 8 7 5 10 10 C 1.52999 * 109.46946 * 294.99806 * 8 7 5 11 11 C 1.50701 * 109.47214 * 60.00134 * 5 4 2 12 12 O 1.21284 * 120.00039 * 339.99964 * 11 5 4 13 13 N 1.34777 * 120.00205 * 160.00014 * 11 5 4 14 14 C 1.46504 * 120.00080 * 180.02562 * 13 11 5 15 15 H 1.08995 * 110.91676 * 37.44772 * 14 13 11 16 16 C 1.54912 * 111.00199 * 273.54221 * 14 13 11 17 17 N 1.47419 * 104.82985 * 204.91508 * 16 14 13 18 18 C 1.36942 * 125.64839 * 204.08990 * 17 16 14 19 19 H 1.07992 * 119.99706 * 6.65716 * 18 17 16 20 20 C 1.38812 * 119.99928 * 186.65061 * 18 17 16 21 21 N 1.31619 * 119.99814 * 7.38075 * 20 18 17 22 22 Si 1.86804 * 119.99683 * 187.38332 * 20 18 17 23 23 H 1.48500 * 109.46845 * 265.01760 * 22 20 18 24 24 H 1.48500 * 109.46905 * 145.01852 * 22 20 18 25 25 H 1.48502 * 109.47029 * 25.01940 * 22 20 18 26 26 C 1.47026 * 108.70506 * 24.36095 * 17 16 14 27 27 C 1.54336 * 107.26214 * 358.57986 * 26 17 16 28 28 H 1.09004 * 110.51446 * 96.45669 * 27 26 17 29 29 O 1.42898 * 111.00273 * 219.59851 * 27 26 17 30 30 H 1.09000 * 109.46989 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46908 * 299.99309 * 1 2 3 32 32 H 1.08998 * 109.47128 * 59.99514 * 1 2 3 33 33 H 0.97000 * 119.99897 * 359.97438 * 4 2 1 34 34 H 1.09000 * 109.47089 * 55.00249 * 7 5 4 35 35 H 1.08996 * 109.47217 * 175.00049 * 7 5 4 36 36 H 1.08994 * 109.47097 * 54.99398 * 8 7 5 37 37 H 1.09004 * 109.47329 * 60.00000 * 9 8 7 38 38 H 1.09003 * 109.47001 * 179.97438 * 9 8 7 39 39 H 1.08998 * 109.47049 * 299.99759 * 9 8 7 40 40 H 1.09003 * 109.47273 * 180.02562 * 10 8 7 41 41 H 1.09004 * 109.47387 * 299.99984 * 10 8 7 42 42 H 1.09005 * 109.46928 * 60.00304 * 10 8 7 43 43 H 0.97004 * 120.00067 * 359.97438 * 13 11 5 44 44 H 1.09002 * 110.36476 * 86.08061 * 16 14 13 45 45 H 1.08992 * 110.46051 * 323.80585 * 16 14 13 46 46 H 0.96999 * 119.99355 * 179.97438 * 21 20 18 47 47 H 1.08999 * 109.88022 * 118.12904 * 26 17 16 48 48 H 1.08996 * 109.87722 * 239.29473 * 26 17 16 49 49 H 0.96697 * 114.00522 * 293.79046 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 1 4.0092 -2.1949 -0.0010 7 6 4.1554 -0.4456 -1.2503 8 6 3.7501 -1.2355 -2.4964 9 6 4.1498 -0.4528 -3.7488 10 6 4.4598 -2.5910 -2.4942 11 6 4.1487 -0.4571 1.2294 12 8 3.4205 0.3043 1.8303 13 7 5.4076 -0.6680 1.6620 14 6 5.8962 0.0220 2.8585 15 1 5.1104 0.1023 3.6096 16 6 6.4672 1.4169 2.5008 17 7 7.4279 1.7187 3.5775 18 6 7.8289 2.9705 3.9615 19 1 7.3557 3.8432 3.5364 20 6 8.8436 3.1176 4.8973 21 7 9.5186 2.0646 5.3071 22 14 9.2508 4.8101 5.5750 23 1 10.3678 5.4001 4.7944 24 1 9.6521 4.6894 6.9996 25 1 8.0563 5.6860 5.4697 26 6 7.8892 0.4529 4.1663 27 6 7.1483 -0.6881 3.4375 28 1 7.7661 -1.0945 2.6367 29 8 6.7679 -1.7180 4.3522 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 1.6959 -2.0073 -0.0005 34 1 3.7208 0.5529 -1.2958 35 1 5.2417 -0.3674 -1.2071 36 1 2.6713 -1.3903 -2.4935 37 1 5.2288 -0.2980 -3.7516 38 1 3.8615 -1.0157 -4.6366 39 1 3.6443 0.5129 -3.7504 40 1 4.1715 -3.1536 -3.3822 41 1 5.5388 -2.4363 -2.4970 42 1 4.1750 -3.1487 -1.6019 43 1 5.9899 -1.2772 1.1817 44 1 5.6701 2.1602 2.4844 45 1 6.9751 1.3849 1.5370 46 1 10.2278 2.1676 5.9608 47 1 8.9650 0.3488 4.0250 48 1 7.6488 0.4292 5.2291 49 1 7.5144 -2.1928 4.7426 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197974299.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:51:02 Heat of formation + Delta-G solvation = -131.789275 kcal Electronic energy + Delta-G solvation = -29629.938569 eV Core-core repulsion = 25591.373206 eV Total energy + Delta-G solvation = -4038.565362 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.69220 -40.28570 -39.07277 -37.60425 -36.70445 -35.54253 -34.97604 -33.67415 -31.79643 -30.27575 -29.28320 -28.60058 -27.95254 -26.52697 -25.19500 -22.69431 -22.25183 -21.81141 -21.22765 -20.45078 -19.14349 -18.66118 -18.15032 -17.96972 -17.32794 -16.88165 -16.41708 -16.20935 -15.86427 -15.78015 -15.44001 -15.34543 -14.90975 -14.59219 -14.49951 -14.45722 -14.19236 -13.83052 -13.61487 -13.36336 -13.25952 -13.17456 -13.09285 -13.00805 -12.85683 -12.76173 -12.73301 -12.61524 -12.14054 -11.92644 -11.77434 -11.68363 -11.53984 -11.49844 -11.20081 -10.97623 -10.79260 -10.52711 -10.14291 -9.89446 -8.99801 -7.92137 -5.31345 1.42310 1.44411 1.54261 1.61565 1.75652 2.11977 2.42924 2.48709 3.10094 3.26255 3.52065 3.60158 3.80653 3.88562 3.95566 4.01449 4.06620 4.15518 4.17062 4.22242 4.39995 4.47742 4.54764 4.57156 4.69494 4.71328 4.78176 4.82977 4.90998 4.97343 5.05787 5.10399 5.12341 5.18971 5.31181 5.34522 5.41320 5.46715 5.49422 5.50612 5.59567 5.60504 6.10600 6.58101 6.70295 6.85660 7.00905 7.30989 7.52971 7.64601 8.27753 9.16017 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.014951 B = 0.003075 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.273604 B = 9104.649761 C = 9362.620221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.502 3.498 3 O -0.572 6.572 4 N -0.707 5.707 5 C 0.144 3.856 6 H 0.152 0.848 7 C -0.124 4.124 8 C -0.083 4.083 9 C -0.148 4.148 10 C -0.149 4.149 11 C 0.491 3.509 12 O -0.561 6.561 13 N -0.702 5.702 14 C 0.160 3.840 15 H 0.064 0.936 16 C 0.133 3.867 17 N -0.620 5.620 18 C -0.254 4.254 19 H 0.073 0.927 20 C -0.056 4.056 21 N -0.943 5.943 22 Si 0.979 3.021 23 H -0.280 1.280 24 H -0.287 1.287 25 H -0.276 1.276 26 C 0.156 3.844 27 C 0.097 3.903 28 H 0.098 0.902 29 O -0.567 6.567 30 H 0.110 0.890 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.423 0.577 34 H 0.053 0.947 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.037 0.963 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.070 0.930 43 H 0.416 0.584 44 H 0.020 0.980 45 H 0.036 0.964 46 H 0.251 0.749 47 H 0.045 0.955 48 H 0.006 0.994 49 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.259 -17.841 -17.596 28.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.290 3.710 3 O -0.449 6.449 4 N -0.362 5.362 5 C 0.035 3.965 6 H 0.170 0.830 7 C -0.163 4.163 8 C -0.101 4.101 9 C -0.206 4.206 10 C -0.206 4.206 11 C 0.277 3.723 12 O -0.437 6.437 13 N -0.356 5.356 14 C 0.052 3.948 15 H 0.082 0.918 16 C 0.006 3.994 17 N -0.348 5.348 18 C -0.383 4.383 19 H 0.091 0.909 20 C -0.250 4.250 21 N -0.591 5.591 22 Si 0.807 3.193 23 H -0.206 1.206 24 H -0.214 1.214 25 H -0.201 1.201 26 C 0.030 3.970 27 C 0.036 3.964 28 H 0.116 0.884 29 O -0.375 6.375 30 H 0.129 0.871 31 H 0.102 0.898 32 H 0.119 0.881 33 H 0.261 0.739 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.056 0.944 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.254 0.746 44 H 0.039 0.961 45 H 0.053 0.947 46 H 0.061 0.939 47 H 0.063 0.937 48 H 0.024 0.976 49 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -13.840 -16.275 -17.190 27.421 hybrid contribution 1.112 0.763 0.901 1.622 sum -12.728 -15.511 -16.289 25.845 Atomic orbital electron populations 1.21828 0.88942 1.06249 1.05068 1.21455 0.91970 0.83351 0.74206 1.90733 1.71560 1.33424 1.49224 1.45652 1.05046 1.09480 1.76035 1.20975 0.82547 1.02158 0.90847 0.83025 1.21962 1.01398 0.99919 0.93027 1.20998 1.00872 0.95641 0.92620 1.21831 1.01399 0.99575 0.97745 1.21935 1.00643 0.95233 1.02811 1.21850 0.81501 0.82183 0.86798 1.90752 1.57206 1.37201 1.58575 1.45677 1.14251 1.47230 1.28426 1.21580 0.94932 0.91110 0.87137 0.91782 1.21863 0.91272 0.94579 0.91664 1.44508 1.49395 1.02565 1.38332 1.19388 1.14529 0.83783 1.20584 0.90896 1.25621 0.97616 1.01446 1.00294 1.70094 1.24563 1.29240 1.35162 0.85065 0.77962 0.78933 0.77363 1.20613 1.21353 1.20138 1.21721 0.97035 0.83775 0.94476 1.23078 0.93741 0.87767 0.91784 0.88447 1.86424 1.38305 1.50070 1.62664 0.87130 0.89849 0.88101 0.73876 0.92809 0.90459 0.90727 0.92728 0.91239 0.94389 0.91670 0.92332 0.91148 0.74635 0.96119 0.94667 0.93937 0.93706 0.97562 0.75233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 10.39 71.24 0.74 -1.65 16 2 C 0.50 12.38 6.70 87.66 0.59 12.97 16 3 O -0.57 -21.39 12.96 19.43 0.25 -21.14 16 4 N -0.71 -12.19 4.57 -446.10 -2.04 -14.23 16 5 C 0.14 2.77 2.87 44.25 0.13 2.89 16 6 H 0.15 1.54 6.35 -2.38 -0.02 1.52 16 7 C -0.12 -2.49 4.01 30.59 0.12 -2.37 16 8 C -0.08 -1.10 2.86 -10.79 -0.03 -1.13 16 9 C -0.15 -2.16 9.19 71.98 0.66 -1.50 16 10 C -0.15 -1.24 8.95 71.98 0.64 -0.59 16 11 C 0.49 15.33 6.82 87.66 0.60 15.92 16 12 O -0.56 -24.12 13.43 19.42 0.26 -23.86 16 13 N -0.70 -20.42 5.23 -435.96 -2.28 -22.70 16 14 C 0.16 6.28 3.04 46.38 0.14 6.42 16 15 H 0.06 3.01 7.73 -2.39 -0.02 2.99 16 16 C 0.13 6.26 6.93 86.86 0.60 6.86 16 17 N -0.62 -34.07 3.39 -691.98 -2.35 -36.42 16 18 C -0.25 -15.22 10.26 84.03 0.86 -14.35 16 19 H 0.07 4.32 7.84 -2.91 -0.02 4.29 16 20 C -0.06 -3.28 5.45 84.86 0.46 -2.81 16 21 N -0.94 -56.54 10.48 21.65 0.23 -56.31 16 22 Si 0.98 47.30 29.56 68.60 2.03 49.32 16 23 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 24 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 25 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 26 C 0.16 7.69 5.21 86.73 0.45 8.15 16 27 C 0.10 3.49 3.94 31.79 0.13 3.61 16 28 H 0.10 2.84 8.00 -2.39 -0.02 2.82 16 29 O -0.57 -18.40 13.40 -148.98 -2.00 -20.40 16 30 H 0.11 0.72 7.91 -2.39 -0.02 0.70 16 31 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.42 3.43 8.67 -92.71 -0.80 2.62 16 34 H 0.05 1.57 6.04 -2.39 -0.01 1.56 16 35 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.07 0.94 7.62 -2.39 -0.02 0.92 16 37 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.07 0.37 6.46 -2.38 -0.02 0.36 16 43 H 0.42 8.43 8.51 -92.71 -0.79 7.64 16 44 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 47 H 0.04 2.39 6.99 -2.39 -0.02 2.37 16 48 H 0.01 0.35 7.83 -2.39 -0.02 0.33 16 49 H 0.40 9.30 9.12 -74.06 -0.68 8.63 16 Total: -1.00 -89.53 389.77 -1.09 -90.63 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: -1.29 Total: 22.69 kcal Atomic # 6 Polarization: 26.33 SS G_CDS: 6.09 Total: 32.42 kcal Atomic # 7 Polarization: -123.22 SS G_CDS: -6.44 Total: -129.66 kcal Atomic # 8 Polarization: -63.92 SS G_CDS: -1.48 Total: -65.40 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.32 kcal Total: -89.53 -1.09 -90.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197974299.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.163 kcal (2) G-P(sol) polarization free energy of solvation -89.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds