Wall clock time and date at job start Fri Apr 10 2020 14:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46934 * 2 1 4 4 C 1.53004 * 109.46934 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.46878 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47178 * 180.02562 * 5 4 3 7 7 O 1.21280 * 119.99992 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00130 * 179.97438 * 6 5 4 9 9 C 1.46506 * 119.99989 * 179.97438 * 8 6 5 10 10 H 1.08998 * 110.36884 * 32.81972 * 9 8 6 11 11 C 1.54377 * 110.32451 * 270.63549 * 9 8 6 12 12 N 1.48562 * 104.59385 * 217.24799 * 11 9 8 13 13 C 1.46899 * 110.99570 * 159.03985 * 12 11 9 14 14 C 1.50701 * 109.46761 * 174.70728 * 13 12 11 15 15 O 1.21291 * 120.00352 * 0.02562 * 14 13 12 16 16 N 1.34778 * 119.99829 * 179.97438 * 14 13 12 17 17 C 1.37093 * 119.99912 * 180.02562 * 16 14 13 18 18 H 1.08001 * 120.00388 * 0.02562 * 17 16 14 19 19 C 1.38953 * 120.00184 * 180.02562 * 17 16 14 20 20 N 1.31413 * 119.99612 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00409 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47255 * 59.99437 * 21 19 17 23 23 H 1.48496 * 109.47606 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.46946 * 299.99788 * 21 19 17 25 25 C 1.48568 * 104.21841 * 39.48734 * 12 11 9 26 26 C 1.54259 * 110.32385 * 154.99651 * 9 8 6 27 27 H 1.08995 * 110.41781 * 237.84222 * 26 9 8 28 28 O 1.42903 * 110.32552 * 0.02562 * 26 9 8 29 29 H 1.08996 * 109.46862 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46979 * 299.99440 * 1 2 3 31 31 H 1.08996 * 109.47318 * 59.99760 * 1 2 3 32 32 H 1.09003 * 109.46979 * 240.00560 * 2 1 3 33 33 H 1.08996 * 109.47318 * 120.00240 * 2 1 3 34 34 H 1.09003 * 109.47343 * 60.00347 * 3 2 1 35 35 H 1.08996 * 109.47314 * 300.00243 * 3 2 1 36 36 H 1.08993 * 109.47142 * 60.00491 * 4 3 2 37 37 H 1.09002 * 109.47201 * 299.99795 * 4 3 2 38 38 H 1.08997 * 109.47532 * 59.99486 * 5 4 3 39 39 H 1.09008 * 109.47140 * 299.99629 * 5 4 3 40 40 H 0.97002 * 120.00440 * 359.97438 * 8 6 5 41 41 H 1.09000 * 110.41059 * 98.47492 * 11 9 8 42 42 H 1.08997 * 110.51245 * 336.08255 * 11 9 8 43 43 H 1.08994 * 109.47553 * 294.70896 * 13 12 11 44 44 H 1.09004 * 109.47238 * 54.71022 * 13 12 11 45 45 H 0.97000 * 120.00203 * 0.02562 * 16 14 13 46 46 H 0.97003 * 119.99527 * 179.97438 * 20 19 17 47 47 H 1.09002 * 110.40652 * 201.73024 * 25 12 11 48 48 H 1.08998 * 110.41255 * 79.29378 * 25 12 11 49 49 H 0.96700 * 114.00311 * 177.08922 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8851 0.0000 6 6 5.5870 2.8851 -0.0013 7 8 6.1934 1.8349 -0.0021 8 7 6.2608 4.0523 -0.0015 9 6 7.7258 4.0524 -0.0022 10 1 8.1050 3.1937 -0.5562 11 6 8.2627 4.0362 1.4452 12 7 9.4659 4.9069 1.4078 13 6 9.8039 5.3955 2.7513 14 6 11.0982 6.1653 2.6949 15 8 11.6814 6.2946 1.6393 16 7 11.6072 6.7109 3.8173 17 6 12.7844 7.4116 3.7659 18 1 13.3037 7.5268 2.8260 19 6 13.3095 7.9737 4.9231 20 7 12.6774 7.8340 6.0667 21 14 14.9131 8.9291 4.8530 22 1 14.7620 10.0829 3.9303 23 1 15.2547 9.4234 6.2110 24 1 15.9973 8.0411 4.3617 25 6 9.0766 6.0292 0.5155 26 6 8.2613 5.3634 -0.6137 27 1 8.9028 5.1500 -1.4687 28 8 7.1769 6.2073 -1.0061 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9564 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 3.9330 0.9289 -0.8908 37 1 3.9338 0.9286 0.8891 38 1 3.7170 3.3984 0.8903 39 1 3.7163 3.3994 -0.8896 40 1 5.7758 4.8924 -0.0012 41 1 8.5361 3.0225 1.7379 42 1 7.5206 4.4424 2.1324 43 1 9.0085 6.0479 3.1116 44 1 9.9140 4.5487 3.4289 45 1 11.1407 6.6078 4.6614 46 1 13.0441 8.2261 6.8746 47 1 9.9629 6.5161 0.1085 48 1 8.4610 6.7484 1.0557 49 1 7.4530 7.0652 -1.3567 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219186090.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:47 Heat of formation + Delta-G solvation = -133.301109 kcal Electronic energy + Delta-G solvation = -27642.290048 eV Core-core repulsion = 23603.659127 eV Total energy + Delta-G solvation = -4038.630920 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.33615 -39.04282 -37.88217 -36.28140 -35.81893 -34.32338 -33.81317 -32.54892 -31.30148 -30.30224 -28.30460 -27.39461 -26.27103 -24.27614 -22.95453 -21.54011 -21.33501 -20.69741 -20.39897 -19.20594 -17.91121 -17.71093 -17.10605 -16.37549 -16.11026 -15.97182 -15.40662 -15.09784 -14.92251 -14.68106 -14.42997 -14.12169 -13.85206 -13.74307 -13.61337 -13.44187 -13.32390 -12.93143 -12.86689 -12.36042 -12.11608 -12.03333 -11.99912 -11.55190 -11.45918 -11.35089 -11.32398 -11.25005 -11.17082 -11.06272 -10.86332 -10.82871 -10.45751 -10.23576 -10.11693 -9.92053 -9.50542 -9.14617 -8.58349 -8.09384 -7.97443 -6.43370 -3.84435 2.54562 2.93490 3.18541 3.24606 3.28765 3.85196 3.88310 4.10431 4.29181 4.43801 4.54294 4.56003 4.58635 4.59973 4.84964 4.87079 5.01523 5.06625 5.12613 5.21876 5.22416 5.24693 5.28552 5.41275 5.42590 5.46280 5.56469 5.63948 5.67501 5.72785 5.74477 5.82235 5.88666 5.93851 5.96873 5.99578 6.09217 6.20583 6.22507 6.34374 6.95151 7.08126 7.40254 7.47785 7.53113 8.03565 8.16649 8.59457 9.15909 9.52017 10.03623 10.74240 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.026433 B = 0.001852 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.013250 B =15116.504468 C =15704.905805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.105 4.105 5 C -0.140 4.140 6 C 0.510 3.490 7 O -0.544 6.544 8 N -0.711 5.711 9 C 0.151 3.849 10 H 0.105 0.895 11 C 0.020 3.980 12 N -0.478 5.478 13 C 0.036 3.964 14 C 0.444 3.556 15 O -0.579 6.579 16 N -0.563 5.563 17 C -0.300 4.300 18 H 0.103 0.897 19 C 0.023 3.977 20 N -0.902 5.902 21 Si 0.931 3.069 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.273 1.273 25 C 0.006 3.994 26 C 0.093 3.907 27 H 0.078 0.922 28 O -0.568 6.568 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.409 0.591 41 H 0.090 0.910 42 H 0.048 0.952 43 H 0.050 0.950 44 H 0.091 0.909 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.106 0.894 48 H 0.049 0.951 49 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.376 -7.876 -10.756 26.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.143 4.143 5 C -0.180 4.180 6 C 0.296 3.704 7 O -0.421 6.421 8 N -0.364 5.364 9 C 0.045 3.955 10 H 0.123 0.877 11 C -0.110 4.110 12 N -0.203 5.203 13 C -0.096 4.096 14 C 0.230 3.770 15 O -0.463 6.463 16 N -0.200 5.200 17 C -0.430 4.430 18 H 0.120 0.880 19 C -0.179 4.179 20 N -0.543 5.543 21 Si 0.758 3.242 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.123 4.123 26 C 0.033 3.967 27 H 0.096 0.904 28 O -0.374 6.374 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.246 0.754 41 H 0.108 0.892 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.110 0.890 45 H 0.225 0.775 46 H 0.082 0.918 47 H 0.124 0.876 48 H 0.068 0.932 49 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -21.360 -9.247 -11.263 25.858 hybrid contribution 0.018 1.856 0.928 2.075 sum -21.342 -7.391 -10.336 24.838 Atomic orbital electron populations 1.21781 0.95977 1.01552 1.01724 1.21527 0.95682 0.96894 1.02247 1.21643 0.95170 0.96975 1.02026 1.21359 0.94594 0.94654 1.03668 1.21683 0.91795 1.00135 1.04349 1.20801 0.90354 0.83626 0.75590 1.90708 1.70475 1.31322 1.49564 1.45833 1.06597 1.09128 1.74884 1.21718 0.80126 0.97535 0.96132 0.87659 1.23611 0.91921 0.99590 0.95842 1.65115 1.30723 1.14972 1.09471 1.22073 0.97313 0.99497 0.90712 1.19653 0.87505 0.84683 0.85188 1.90494 1.62442 1.63634 1.29744 1.41846 1.22319 1.47199 1.08641 1.19649 0.98791 1.28263 0.96271 0.87956 1.25261 0.99694 0.98218 0.94705 1.69608 1.39907 1.45589 0.99176 0.85914 0.81440 0.79690 0.77148 1.19948 1.20972 1.19865 1.23933 1.00117 0.93814 0.94427 1.22872 0.87431 0.89691 0.96667 0.90359 1.86241 1.34132 1.31594 1.85434 0.92853 0.92787 0.92827 0.91969 0.91923 0.91953 0.91998 0.91219 0.91164 0.88997 0.88976 0.75429 0.89212 0.93363 0.93153 0.89030 0.77490 0.91810 0.87631 0.93237 0.76522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 37.16 0.37 -0.46 16 2 C -0.13 -0.79 5.93 -26.73 -0.16 -0.95 16 3 C -0.12 -0.75 5.21 -26.73 -0.14 -0.89 16 4 C -0.10 -0.84 4.50 -26.73 -0.12 -0.96 16 5 C -0.14 -1.06 5.70 -27.88 -0.16 -1.22 16 6 C 0.51 5.79 7.83 -10.99 -0.09 5.71 16 7 O -0.54 -8.27 15.63 5.56 0.09 -8.18 16 8 N -0.71 -7.60 4.85 -52.47 -0.25 -7.85 16 9 C 0.15 1.89 3.41 -66.55 -0.23 1.67 16 10 H 0.11 1.45 7.56 -51.93 -0.39 1.06 16 11 C 0.02 0.27 6.20 -2.18 -0.01 0.26 16 12 N -0.48 -7.94 5.06 -231.41 -1.17 -9.11 16 13 C 0.04 0.64 5.30 -4.98 -0.03 0.62 16 14 C 0.44 10.40 7.59 -10.98 -0.08 10.31 16 15 O -0.58 -15.34 14.42 5.55 0.08 -15.26 16 16 N -0.56 -14.19 5.29 -10.96 -0.06 -14.25 16 17 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 18 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 19 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 20 N -0.90 -24.39 13.05 55.50 0.72 -23.67 16 21 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 C 0.01 0.08 5.53 -2.18 -0.01 0.07 16 26 C 0.09 1.09 4.43 -25.35 -0.11 0.98 16 27 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 28 O -0.57 -5.33 11.53 -35.23 -0.41 -5.73 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 37 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.09 0.56 8.14 -51.92 -0.42 0.13 16 40 H 0.41 3.77 7.26 -40.82 -0.30 3.47 16 41 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.05 0.64 7.91 -51.93 -0.41 0.23 16 43 H 0.05 0.82 7.88 -51.93 -0.41 0.41 16 44 H 0.09 1.52 8.13 -51.93 -0.42 1.10 16 45 H 0.39 9.47 7.90 -40.82 -0.32 9.14 16 46 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 47 H 0.11 1.83 6.91 -51.93 -0.36 1.47 16 48 H 0.05 0.72 7.76 -51.93 -0.40 0.31 16 49 H 0.39 2.32 9.11 45.56 0.41 2.74 16 LS Contribution 399.08 15.07 6.01 6.01 Total: -1.00 -32.99 399.08 -8.62 -41.61 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: -7.60 Total: 13.36 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: -1.01 Total: 7.19 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: -0.76 Total: -54.88 kcal Atomic # 8 Polarization: -28.94 SS G_CDS: -0.24 Total: -29.18 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.99 -8.62 -41.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219186090.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.692 kcal (2) G-P(sol) polarization free energy of solvation -32.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds