Wall clock time and date at job start Fri Apr 10 2020 14:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46934 * 2 1 4 4 C 1.53004 * 109.46934 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.46878 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47178 * 180.02562 * 5 4 3 7 7 O 1.21280 * 119.99992 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00130 * 179.97438 * 6 5 4 9 9 C 1.46506 * 119.99989 * 179.97438 * 8 6 5 10 10 H 1.08998 * 110.36884 * 32.81972 * 9 8 6 11 11 C 1.54377 * 110.32451 * 270.63549 * 9 8 6 12 12 N 1.48562 * 104.59385 * 217.24799 * 11 9 8 13 13 C 1.46899 * 110.99570 * 159.03985 * 12 11 9 14 14 C 1.50701 * 109.46761 * 174.70728 * 13 12 11 15 15 O 1.21291 * 120.00352 * 0.02562 * 14 13 12 16 16 N 1.34778 * 119.99829 * 179.97438 * 14 13 12 17 17 C 1.37093 * 119.99912 * 180.02562 * 16 14 13 18 18 H 1.08001 * 120.00388 * 0.02562 * 17 16 14 19 19 C 1.38953 * 120.00184 * 180.02562 * 17 16 14 20 20 N 1.31413 * 119.99612 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00409 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47255 * 59.99437 * 21 19 17 23 23 H 1.48496 * 109.47606 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.46946 * 299.99788 * 21 19 17 25 25 C 1.48568 * 104.21841 * 39.48734 * 12 11 9 26 26 C 1.54259 * 110.32385 * 154.99651 * 9 8 6 27 27 H 1.08995 * 110.41781 * 237.84222 * 26 9 8 28 28 O 1.42903 * 110.32552 * 0.02562 * 26 9 8 29 29 H 1.08996 * 109.46862 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46979 * 299.99440 * 1 2 3 31 31 H 1.08996 * 109.47318 * 59.99760 * 1 2 3 32 32 H 1.09003 * 109.46979 * 240.00560 * 2 1 3 33 33 H 1.08996 * 109.47318 * 120.00240 * 2 1 3 34 34 H 1.09003 * 109.47343 * 60.00347 * 3 2 1 35 35 H 1.08996 * 109.47314 * 300.00243 * 3 2 1 36 36 H 1.08993 * 109.47142 * 60.00491 * 4 3 2 37 37 H 1.09002 * 109.47201 * 299.99795 * 4 3 2 38 38 H 1.08997 * 109.47532 * 59.99486 * 5 4 3 39 39 H 1.09008 * 109.47140 * 299.99629 * 5 4 3 40 40 H 0.97002 * 120.00440 * 359.97438 * 8 6 5 41 41 H 1.09000 * 110.41059 * 98.47492 * 11 9 8 42 42 H 1.08997 * 110.51245 * 336.08255 * 11 9 8 43 43 H 1.08994 * 109.47553 * 294.70896 * 13 12 11 44 44 H 1.09004 * 109.47238 * 54.71022 * 13 12 11 45 45 H 0.97000 * 120.00203 * 0.02562 * 16 14 13 46 46 H 0.97003 * 119.99527 * 179.97438 * 20 19 17 47 47 H 1.09002 * 110.40652 * 201.73024 * 25 12 11 48 48 H 1.08998 * 110.41255 * 79.29378 * 25 12 11 49 49 H 0.96700 * 114.00311 * 177.08922 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8851 0.0000 6 6 5.5870 2.8851 -0.0013 7 8 6.1934 1.8349 -0.0021 8 7 6.2608 4.0523 -0.0015 9 6 7.7258 4.0524 -0.0022 10 1 8.1050 3.1937 -0.5562 11 6 8.2627 4.0362 1.4452 12 7 9.4659 4.9069 1.4078 13 6 9.8039 5.3955 2.7513 14 6 11.0982 6.1653 2.6949 15 8 11.6814 6.2946 1.6393 16 7 11.6072 6.7109 3.8173 17 6 12.7844 7.4116 3.7659 18 1 13.3037 7.5268 2.8260 19 6 13.3095 7.9737 4.9231 20 7 12.6774 7.8340 6.0667 21 14 14.9131 8.9291 4.8530 22 1 14.7620 10.0829 3.9303 23 1 15.2547 9.4234 6.2110 24 1 15.9973 8.0411 4.3617 25 6 9.0766 6.0292 0.5155 26 6 8.2613 5.3634 -0.6137 27 1 8.9028 5.1500 -1.4687 28 8 7.1769 6.2073 -1.0061 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9564 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 3.9330 0.9289 -0.8908 37 1 3.9338 0.9286 0.8891 38 1 3.7170 3.3984 0.8903 39 1 3.7163 3.3994 -0.8896 40 1 5.7758 4.8924 -0.0012 41 1 8.5361 3.0225 1.7379 42 1 7.5206 4.4424 2.1324 43 1 9.0085 6.0479 3.1116 44 1 9.9140 4.5487 3.4289 45 1 11.1407 6.6078 4.6614 46 1 13.0441 8.2261 6.8746 47 1 9.9629 6.5161 0.1085 48 1 8.4610 6.7484 1.0557 49 1 7.4530 7.0652 -1.3567 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219186090.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:46 Heat of formation + Delta-G solvation = -160.042611 kcal Electronic energy + Delta-G solvation = -27643.449646 eV Core-core repulsion = 23603.659127 eV Total energy + Delta-G solvation = -4039.790519 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.37003 -40.34800 -39.39002 -36.88703 -36.84613 -35.91918 -35.21302 -33.31513 -33.15044 -31.49042 -29.31253 -28.41670 -27.52562 -25.97679 -23.64625 -22.77005 -21.89261 -21.62430 -21.28054 -20.99686 -19.88822 -18.61936 -18.02154 -17.80069 -17.00775 -16.98787 -16.61599 -16.39814 -16.28528 -15.86945 -15.82913 -15.32954 -15.08690 -14.90552 -14.51692 -14.29076 -14.15497 -14.05710 -13.95687 -13.71250 -13.43899 -13.23248 -12.97065 -12.80658 -12.57164 -12.55504 -12.54145 -12.43153 -12.13293 -12.04885 -11.86383 -11.80004 -11.65901 -11.48150 -11.34886 -11.05946 -10.84333 -10.37655 -10.09716 -10.01864 -9.48754 -8.46802 -5.95703 1.39574 1.41813 1.52554 1.67132 2.02611 2.04584 2.29271 2.78869 3.12576 3.19332 3.30728 3.47875 3.74424 3.83746 3.89999 4.03718 4.05574 4.17084 4.24702 4.31585 4.33668 4.34751 4.41076 4.47945 4.50310 4.61966 4.71658 4.76335 4.83776 4.89028 4.90073 4.97649 4.98628 5.08566 5.14258 5.26109 5.36651 5.40151 5.41938 5.47615 5.56018 5.72550 5.78567 6.02722 6.59356 6.62058 6.75600 7.11987 7.32340 7.54887 8.10243 8.70325 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.026433 B = 0.001852 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.013250 B =15116.504468 C =15704.905805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.129 4.129 3 C -0.114 4.114 4 C -0.103 4.103 5 C -0.131 4.131 6 C 0.505 3.495 7 O -0.588 6.588 8 N -0.700 5.700 9 C 0.153 3.847 10 H 0.090 0.910 11 C 0.027 3.973 12 N -0.501 5.501 13 C 0.048 3.952 14 C 0.443 3.557 15 O -0.614 6.614 16 N -0.573 5.573 17 C -0.334 4.334 18 H 0.080 0.920 19 C -0.012 4.012 20 N -0.920 5.920 21 Si 0.993 3.007 22 H -0.270 1.270 23 H -0.271 1.271 24 H -0.273 1.273 25 C 0.009 3.991 26 C 0.112 3.888 27 H 0.081 0.919 28 O -0.562 6.562 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.420 0.580 41 H 0.082 0.918 42 H 0.060 0.940 43 H 0.073 0.927 44 H 0.107 0.893 45 H 0.396 0.604 46 H 0.277 0.723 47 H 0.075 0.925 48 H 0.055 0.945 49 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.245 -7.039 -10.829 27.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.167 4.167 3 C -0.151 4.151 4 C -0.141 4.141 5 C -0.171 4.171 6 C 0.294 3.706 7 O -0.468 6.468 8 N -0.354 5.354 9 C 0.046 3.954 10 H 0.109 0.891 11 C -0.102 4.102 12 N -0.227 5.227 13 C -0.083 4.083 14 C 0.230 3.770 15 O -0.500 6.500 16 N -0.210 5.210 17 C -0.464 4.464 18 H 0.098 0.902 19 C -0.212 4.212 20 N -0.561 5.561 21 Si 0.817 3.183 22 H -0.196 1.196 23 H -0.196 1.196 24 H -0.198 1.198 25 C -0.120 4.120 26 C 0.051 3.949 27 H 0.099 0.901 28 O -0.370 6.370 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.258 0.742 41 H 0.100 0.900 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.125 0.875 45 H 0.229 0.771 46 H 0.087 0.913 47 H 0.093 0.907 48 H 0.073 0.927 49 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -23.271 -8.381 -11.336 27.209 hybrid contribution 0.572 1.572 0.907 1.903 sum -22.700 -6.809 -10.429 25.892 Atomic orbital electron populations 1.21767 0.95157 1.01819 1.02129 1.21550 0.96407 0.97029 1.01706 1.21594 0.93524 0.97014 1.02979 1.21313 0.95951 0.94797 1.02011 1.21720 0.88663 1.00159 1.06526 1.21513 0.91875 0.82897 0.74322 1.90696 1.71638 1.32880 1.51583 1.45754 1.05685 1.09610 1.74317 1.21518 0.81366 0.97381 0.95115 0.89145 1.23553 0.91053 0.98542 0.97033 1.65018 1.32760 1.16015 1.08878 1.21921 0.94674 0.99603 0.92145 1.20606 0.88689 0.83667 0.84032 1.90471 1.63940 1.64637 1.30925 1.41910 1.22085 1.47695 1.09354 1.19635 1.00335 1.30372 0.96014 0.90185 1.26036 1.02600 0.98513 0.94041 1.69671 1.41052 1.45820 0.99575 0.84987 0.77381 0.78272 0.77684 1.19563 1.19552 1.19836 1.23852 0.99351 0.93597 0.95156 1.22539 0.87483 0.89294 0.95541 0.90092 1.86209 1.32971 1.32524 1.85320 0.92737 0.92426 0.92330 0.92495 0.92609 0.91014 0.90889 0.92870 0.92982 0.86702 0.86592 0.74180 0.89982 0.92132 0.90936 0.87530 0.77077 0.91312 0.90667 0.92677 0.74495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 71.98 0.71 -0.71 16 2 C -0.13 -1.49 5.93 30.60 0.18 -1.31 16 3 C -0.11 -1.19 5.21 30.60 0.16 -1.03 16 4 C -0.10 -1.54 4.50 30.60 0.14 -1.40 16 5 C -0.13 -1.67 5.70 29.85 0.17 -1.50 16 6 C 0.51 10.76 7.83 87.66 0.69 11.45 16 7 O -0.59 -17.86 15.63 -3.03 -0.05 -17.91 16 8 N -0.70 -13.54 4.85 -438.30 -2.13 -15.67 16 9 C 0.15 3.67 3.41 45.88 0.16 3.82 16 10 H 0.09 2.49 7.56 -2.39 -0.02 2.47 16 11 C 0.03 0.72 6.20 86.45 0.54 1.26 16 12 N -0.50 -16.40 5.06 -886.03 -4.49 -20.88 16 13 C 0.05 1.69 5.30 85.56 0.45 2.14 16 14 C 0.44 21.00 7.59 87.66 0.66 21.67 16 15 O -0.61 -33.42 14.42 -3.06 -0.04 -33.47 16 16 N -0.57 -29.33 5.29 -306.98 -1.62 -30.95 16 17 C -0.33 -18.87 9.68 84.04 0.81 -18.06 16 18 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 19 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 20 N -0.92 -49.49 13.05 21.66 0.28 -49.20 16 21 Si 0.99 42.66 29.55 68.60 2.03 44.69 16 22 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 23 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 C 0.01 0.26 5.53 86.45 0.48 0.74 16 26 C 0.11 2.47 4.43 31.49 0.14 2.61 16 27 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 28 O -0.56 -9.06 11.53 -148.98 -1.72 -10.78 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.05 0.96 8.10 -2.39 -0.02 0.94 16 37 H 0.05 0.96 8.10 -2.39 -0.02 0.94 16 38 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.12 0.98 8.14 -2.38 -0.02 0.96 16 40 H 0.42 6.43 7.26 -92.71 -0.67 5.76 16 41 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.06 1.47 7.91 -2.39 -0.02 1.45 16 43 H 0.07 2.24 7.88 -2.39 -0.02 2.22 16 44 H 0.11 3.42 8.13 -2.39 -0.02 3.40 16 45 H 0.40 19.28 7.90 -92.71 -0.73 18.55 16 46 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 47 H 0.07 2.66 6.91 -2.39 -0.02 2.64 16 48 H 0.06 1.52 7.76 -2.39 -0.02 1.50 16 49 H 0.40 3.76 9.11 -74.06 -0.67 3.08 16 Total: -1.00 -72.52 399.08 -3.09 -75.61 By element: Atomic # 1 Polarization: 40.16 SS G_CDS: -1.11 Total: 39.05 kcal Atomic # 6 Polarization: 13.75 SS G_CDS: 5.76 Total: 19.51 kcal Atomic # 7 Polarization: -108.75 SS G_CDS: -7.95 Total: -116.70 kcal Atomic # 8 Polarization: -60.34 SS G_CDS: -1.81 Total: -62.15 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -72.52 -3.09 -75.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219186090.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.436 kcal (2) G-P(sol) polarization free energy of solvation -72.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds