Wall clock time and date at job start Fri Apr 10 2020 14:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21281 * 119.99818 * 2 1 4 4 N 1.34773 * 119.99963 * 179.97438 * 2 1 3 5 5 C 1.46497 * 120.00102 * 180.02562 * 4 2 1 6 6 H 1.08995 * 109.47494 * 180.02562 * 5 4 2 7 7 C 1.52998 * 109.47444 * 300.00447 * 5 4 2 8 8 C 1.53004 * 109.47272 * 295.00095 * 7 5 4 9 9 C 1.52998 * 109.47241 * 174.99641 * 8 7 5 10 10 C 1.52998 * 109.46559 * 294.99857 * 8 7 5 11 11 C 1.50702 * 109.46896 * 60.00218 * 5 4 2 12 12 O 1.21283 * 120.00262 * 340.00393 * 11 5 4 13 13 N 1.34777 * 119.99928 * 159.72299 * 11 5 4 14 14 C 1.46499 * 120.00199 * 180.27479 * 13 11 5 15 15 H 1.09004 * 110.88726 * 34.30137 * 14 13 11 16 16 C 1.54905 * 111.00756 * 270.42520 * 14 13 11 17 17 N 1.47469 * 104.81448 * 204.94875 * 16 14 13 18 18 C 1.36930 * 125.63260 * 204.05001 * 17 16 14 19 19 H 1.08001 * 120.00133 * 359.97438 * 18 17 16 20 20 C 1.38817 * 120.00440 * 179.97438 * 18 17 16 21 21 N 1.31620 * 119.99539 * 359.97438 * 20 18 17 22 22 Si 1.86791 * 120.00442 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47148 * 60.00058 * 22 20 18 24 24 H 1.48497 * 109.47649 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47114 * 300.00155 * 22 20 18 26 26 C 1.47025 * 108.72066 * 24.06659 * 17 16 14 27 27 C 1.54320 * 107.27081 * 358.97600 * 26 17 16 28 28 H 1.08998 * 110.87484 * 219.37084 * 27 26 17 29 29 O 1.42898 * 110.71996 * 96.17192 * 27 26 17 30 30 H 1.09001 * 109.46952 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47031 * 300.00308 * 1 2 3 32 32 H 1.09002 * 109.46939 * 60.00438 * 1 2 3 33 33 H 0.96995 * 120.00023 * 0.02562 * 4 2 1 34 34 H 1.09003 * 109.47117 * 54.99613 * 7 5 4 35 35 H 1.08996 * 109.47757 * 174.99556 * 7 5 4 36 36 H 1.08998 * 109.46850 * 54.99200 * 8 7 5 37 37 H 1.09001 * 109.46835 * 59.99946 * 9 8 7 38 38 H 1.08998 * 109.46875 * 179.97438 * 9 8 7 39 39 H 1.08999 * 109.46890 * 300.00052 * 9 8 7 40 40 H 1.08995 * 109.47746 * 60.00057 * 10 8 7 41 41 H 1.08998 * 109.47164 * 179.97438 * 10 8 7 42 42 H 1.09006 * 109.46957 * 299.99618 * 10 8 7 43 43 H 0.97000 * 120.00317 * 0.28382 * 13 11 5 44 44 H 1.09003 * 110.36602 * 323.75285 * 16 14 13 45 45 H 1.08997 * 110.37451 * 86.07405 * 16 14 13 46 46 H 0.97001 * 119.99914 * 179.97438 * 21 20 18 47 47 H 1.09001 * 109.88310 * 239.55938 * 26 17 16 48 48 H 1.08997 * 110.01549 * 118.46602 * 26 17 16 49 49 H 0.96705 * 114.00197 * 66.47746 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0011 6 1 4.0092 -2.1948 0.0010 7 6 4.1564 -0.4462 -1.2480 8 6 3.7522 -1.2365 -2.4942 9 6 4.1528 -0.4541 -3.7465 10 6 4.4618 -2.5919 -2.4908 11 6 4.1477 -0.4566 1.2316 12 8 3.4190 0.3050 1.8317 13 7 5.4044 -0.6716 1.6686 14 6 5.8903 0.0146 2.8683 15 1 5.0873 0.1444 3.5939 16 6 6.5367 1.3750 2.5065 17 7 7.4800 1.6487 3.6065 18 6 7.9293 2.8863 3.9827 19 1 7.5908 3.7666 3.4566 20 6 8.8199 3.0095 5.0404 21 7 9.2321 1.9366 5.6819 22 14 9.4334 4.6976 5.5531 23 1 8.2801 5.5424 5.9551 24 1 10.3673 4.5580 6.6992 25 1 10.1401 5.3348 4.4130 26 6 7.8583 0.3731 4.2321 27 6 7.0894 -0.7441 3.4958 28 1 6.7416 -1.5030 4.1966 29 8 7.9033 -1.3325 2.4792 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.6959 -2.0072 0.0005 34 1 3.7218 0.5524 -1.2943 35 1 5.2427 -0.3679 -1.2040 36 1 2.6732 -1.3912 -2.4921 37 1 5.2318 -0.2994 -3.7485 38 1 3.8652 -1.0174 -4.6342 39 1 3.6473 0.5115 -3.7488 40 1 4.1764 -3.1493 -1.5987 41 1 4.1735 -3.1552 -3.3783 42 1 5.5408 -2.4372 -2.4929 43 1 5.9872 -1.2806 1.1887 44 1 7.0706 1.3013 1.5590 45 1 5.7767 2.1545 2.4548 46 1 9.8547 2.0226 6.4207 47 1 7.5815 0.3808 5.2864 48 1 8.9317 0.2124 4.1320 49 1 8.6670 -1.8187 2.8190 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220812524.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:51:06 Heat of formation + Delta-G solvation = -99.498841 kcal Electronic energy + Delta-G solvation = -29739.052959 eV Core-core repulsion = 25701.887815 eV Total energy + Delta-G solvation = -4037.165144 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.55522 -38.90051 -37.64234 -36.72902 -34.80426 -34.10020 -33.78934 -31.69538 -30.82278 -28.75945 -28.12963 -27.39775 -26.94758 -24.80458 -23.93775 -21.40799 -20.54365 -20.28033 -19.93743 -19.43233 -17.62830 -17.38238 -16.87265 -16.50305 -15.93168 -15.43439 -15.04025 -14.73904 -14.67782 -14.56083 -14.16429 -13.95177 -13.66172 -13.59722 -13.12199 -12.89977 -12.67809 -12.59928 -12.56829 -12.48098 -12.37632 -12.13571 -11.99482 -11.82649 -11.24519 -11.02416 -10.97014 -10.87863 -10.82949 -10.79017 -10.46088 -10.39534 -10.12174 -9.94045 -9.76126 -9.50690 -9.30697 -8.80018 -8.63466 -8.53551 -6.82545 -5.70660 -3.03050 2.71892 2.92735 3.11934 3.44339 3.47611 3.49290 3.58502 4.47373 4.56115 4.61323 4.69389 4.71694 4.86119 4.90298 5.04294 5.08779 5.22508 5.33740 5.34565 5.42122 5.43078 5.49859 5.55569 5.58895 5.65831 5.70175 5.75567 5.77974 5.85453 5.92033 6.03167 6.11336 6.15182 6.23639 6.27864 6.39463 6.71012 6.77051 7.02705 7.36813 7.48105 7.48337 7.76707 7.91556 8.09702 8.24386 8.36544 8.62990 9.22679 9.82685 10.47593 11.41692 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.015688 B = 0.003120 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.357967 B = 8971.210093 C = 9469.394099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.513 3.487 3 O -0.509 6.509 4 N -0.722 5.722 5 C 0.136 3.864 6 H 0.106 0.894 7 C -0.129 4.129 8 C -0.091 4.091 9 C -0.147 4.147 10 C -0.151 4.151 11 C 0.496 3.504 12 O -0.514 6.514 13 N -0.710 5.710 14 C 0.142 3.858 15 H 0.100 0.900 16 C 0.132 3.868 17 N -0.601 5.601 18 C -0.223 4.223 19 H 0.079 0.921 20 C -0.010 4.010 21 N -0.928 5.928 22 Si 0.915 3.085 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.155 3.845 27 C 0.068 3.932 28 H 0.059 0.941 29 O -0.567 6.567 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.400 0.600 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.058 0.942 43 H 0.404 0.596 44 H 0.025 0.975 45 H 0.044 0.956 46 H 0.252 0.748 47 H 0.054 0.946 48 H 0.052 0.948 49 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.368 -15.223 -15.296 25.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.299 3.701 3 O -0.382 6.382 4 N -0.376 5.376 5 C 0.027 3.973 6 H 0.123 0.877 7 C -0.168 4.168 8 C -0.109 4.109 9 C -0.204 4.204 10 C -0.209 4.209 11 C 0.279 3.721 12 O -0.387 6.387 13 N -0.363 5.363 14 C 0.037 3.963 15 H 0.118 0.882 16 C 0.005 3.995 17 N -0.328 5.328 18 C -0.351 4.351 19 H 0.097 0.903 20 C -0.206 4.206 21 N -0.576 5.576 22 Si 0.745 3.255 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.030 3.970 27 C 0.008 3.992 28 H 0.077 0.923 29 O -0.373 6.373 30 H 0.089 0.911 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.234 0.766 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.239 0.761 44 H 0.043 0.957 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.072 0.928 48 H 0.070 0.930 49 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -13.779 -13.490 -15.064 24.469 hybrid contribution 0.939 -0.156 0.612 1.132 sum -12.840 -13.646 -14.451 23.663 Atomic orbital electron populations 1.21818 0.92278 1.03614 1.05065 1.20608 0.90158 0.83669 0.75633 1.90751 1.70000 1.31094 1.46378 1.45736 1.05395 1.08976 1.77501 1.20880 0.81786 1.00688 0.93992 0.87669 1.22021 1.01729 1.01355 0.91664 1.21050 1.00285 0.95066 0.94526 1.21816 1.01741 1.00047 0.96819 1.21940 1.00966 0.96540 1.01418 1.20826 0.82280 0.82947 0.86061 1.90752 1.55949 1.35127 1.56908 1.45745 1.13572 1.47461 1.29507 1.22267 0.94314 0.93147 0.86621 0.88184 1.21831 0.92057 0.93629 0.91976 1.44282 1.50839 1.02789 1.34846 1.19070 1.20786 0.83368 1.11892 0.90342 1.24778 0.99839 0.97557 0.98381 1.69905 1.36843 1.26474 1.24417 0.86146 0.78343 0.83217 0.77785 1.21106 1.21613 1.21159 1.21836 0.97207 0.82685 0.95304 1.23506 0.91280 0.95212 0.89164 0.92276 1.86249 1.42240 1.73020 1.35835 0.91070 0.88873 0.89177 0.76575 0.88846 0.90516 0.91241 0.92497 0.92843 0.92654 0.92729 0.92781 0.92292 0.76123 0.95726 0.93781 0.93746 0.92765 0.92955 0.77385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 10.39 36.01 0.37 -0.99 16 2 C 0.51 6.46 6.69 -10.99 -0.07 6.38 16 3 O -0.51 -9.17 12.96 -17.93 -0.23 -9.40 16 4 N -0.72 -7.05 4.57 -54.94 -0.25 -7.30 16 5 C 0.14 1.50 2.88 -69.08 -0.20 1.30 16 6 H 0.11 0.83 6.34 -51.93 -0.33 0.50 16 7 C -0.13 -1.45 4.01 -26.73 -0.11 -1.56 16 8 C -0.09 -0.75 2.86 -90.62 -0.26 -1.01 16 9 C -0.15 -1.23 9.19 37.16 0.34 -0.89 16 10 C -0.15 -1.02 8.95 37.16 0.33 -0.68 16 11 C 0.50 7.96 6.82 -10.98 -0.07 7.89 16 12 O -0.51 -10.61 13.37 -17.93 -0.24 -10.85 16 13 N -0.71 -11.18 5.18 -51.73 -0.27 -11.45 16 14 C 0.14 2.76 3.25 -65.79 -0.21 2.55 16 15 H 0.10 2.10 7.63 -51.93 -0.40 1.70 16 16 C 0.13 3.08 6.92 -2.51 -0.02 3.07 16 17 N -0.60 -16.04 3.40 -170.04 -0.58 -16.62 16 18 C -0.22 -6.49 10.28 -15.06 -0.15 -6.65 16 19 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 20 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 21 N -0.93 -27.34 10.31 55.49 0.57 -26.77 16 22 Si 0.91 22.74 29.55 -169.99 -5.02 17.72 16 23 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 25 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 26 C 0.16 3.72 5.14 -3.06 -0.02 3.71 16 27 C 0.07 1.25 4.20 -24.90 -0.10 1.15 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 O -0.57 -9.03 12.14 -35.23 -0.43 -9.46 16 30 H 0.07 0.35 7.91 -51.93 -0.41 -0.06 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.40 2.37 8.67 -40.82 -0.35 2.02 16 34 H 0.09 1.37 6.04 -51.93 -0.31 1.06 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.56 7.62 -51.93 -0.40 0.16 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.05 0.32 6.46 -51.93 -0.34 -0.02 16 41 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.40 5.48 7.57 -40.82 -0.31 5.18 16 44 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.04 1.10 8.14 -51.93 -0.42 0.67 16 46 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 47 H 0.05 1.43 7.38 -51.93 -0.38 1.05 16 48 H 0.05 1.36 7.43 -51.93 -0.39 0.97 16 49 H 0.38 4.65 9.12 45.56 0.42 5.06 16 LS Contribution 387.75 15.07 5.84 5.84 Total: -1.00 -37.36 387.75 -8.27 -45.63 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -7.39 Total: 8.79 kcal Atomic # 6 Polarization: 14.13 SS G_CDS: -0.27 Total: 13.87 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: -0.52 Total: -62.13 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.90 Total: -29.71 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.36 -8.27 -45.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220812524.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.873 kcal (2) G-P(sol) polarization free energy of solvation -37.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds