Wall clock time and date at job start Fri Apr 10 2020 14:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21281 * 119.99818 * 2 1 4 4 N 1.34773 * 119.99963 * 179.97438 * 2 1 3 5 5 C 1.46497 * 120.00102 * 180.02562 * 4 2 1 6 6 H 1.08995 * 109.47494 * 180.02562 * 5 4 2 7 7 C 1.52998 * 109.47444 * 300.00447 * 5 4 2 8 8 C 1.53004 * 109.47272 * 295.00095 * 7 5 4 9 9 C 1.52998 * 109.47241 * 174.99641 * 8 7 5 10 10 C 1.52998 * 109.46559 * 294.99857 * 8 7 5 11 11 C 1.50702 * 109.46896 * 60.00218 * 5 4 2 12 12 O 1.21283 * 120.00262 * 340.00393 * 11 5 4 13 13 N 1.34777 * 119.99928 * 159.72299 * 11 5 4 14 14 C 1.46499 * 120.00199 * 180.27479 * 13 11 5 15 15 H 1.09004 * 110.88726 * 34.30137 * 14 13 11 16 16 C 1.54905 * 111.00756 * 270.42520 * 14 13 11 17 17 N 1.47469 * 104.81448 * 204.94875 * 16 14 13 18 18 C 1.36930 * 125.63260 * 204.05001 * 17 16 14 19 19 H 1.08001 * 120.00133 * 359.97438 * 18 17 16 20 20 C 1.38817 * 120.00440 * 179.97438 * 18 17 16 21 21 N 1.31620 * 119.99539 * 359.97438 * 20 18 17 22 22 Si 1.86791 * 120.00442 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47148 * 60.00058 * 22 20 18 24 24 H 1.48497 * 109.47649 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47114 * 300.00155 * 22 20 18 26 26 C 1.47025 * 108.72066 * 24.06659 * 17 16 14 27 27 C 1.54320 * 107.27081 * 358.97600 * 26 17 16 28 28 H 1.08998 * 110.87484 * 219.37084 * 27 26 17 29 29 O 1.42898 * 110.71996 * 96.17192 * 27 26 17 30 30 H 1.09001 * 109.46952 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47031 * 300.00308 * 1 2 3 32 32 H 1.09002 * 109.46939 * 60.00438 * 1 2 3 33 33 H 0.96995 * 120.00023 * 0.02562 * 4 2 1 34 34 H 1.09003 * 109.47117 * 54.99613 * 7 5 4 35 35 H 1.08996 * 109.47757 * 174.99556 * 7 5 4 36 36 H 1.08998 * 109.46850 * 54.99200 * 8 7 5 37 37 H 1.09001 * 109.46835 * 59.99946 * 9 8 7 38 38 H 1.08998 * 109.46875 * 179.97438 * 9 8 7 39 39 H 1.08999 * 109.46890 * 300.00052 * 9 8 7 40 40 H 1.08995 * 109.47746 * 60.00057 * 10 8 7 41 41 H 1.08998 * 109.47164 * 179.97438 * 10 8 7 42 42 H 1.09006 * 109.46957 * 299.99618 * 10 8 7 43 43 H 0.97000 * 120.00317 * 0.28382 * 13 11 5 44 44 H 1.09003 * 110.36602 * 323.75285 * 16 14 13 45 45 H 1.08997 * 110.37451 * 86.07405 * 16 14 13 46 46 H 0.97001 * 119.99914 * 179.97438 * 21 20 18 47 47 H 1.09001 * 109.88310 * 239.55938 * 26 17 16 48 48 H 1.08997 * 110.01549 * 118.46602 * 26 17 16 49 49 H 0.96705 * 114.00197 * 66.47746 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0011 6 1 4.0092 -2.1948 0.0010 7 6 4.1564 -0.4462 -1.2480 8 6 3.7522 -1.2365 -2.4942 9 6 4.1528 -0.4541 -3.7465 10 6 4.4618 -2.5919 -2.4908 11 6 4.1477 -0.4566 1.2316 12 8 3.4190 0.3050 1.8317 13 7 5.4044 -0.6716 1.6686 14 6 5.8903 0.0146 2.8683 15 1 5.0873 0.1444 3.5939 16 6 6.5367 1.3750 2.5065 17 7 7.4800 1.6487 3.6065 18 6 7.9293 2.8863 3.9827 19 1 7.5908 3.7666 3.4566 20 6 8.8199 3.0095 5.0404 21 7 9.2321 1.9366 5.6819 22 14 9.4334 4.6976 5.5531 23 1 8.2801 5.5424 5.9551 24 1 10.3673 4.5580 6.6992 25 1 10.1401 5.3348 4.4130 26 6 7.8583 0.3731 4.2321 27 6 7.0894 -0.7441 3.4958 28 1 6.7416 -1.5030 4.1966 29 8 7.9033 -1.3325 2.4792 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.6959 -2.0072 0.0005 34 1 3.7218 0.5524 -1.2943 35 1 5.2427 -0.3679 -1.2040 36 1 2.6732 -1.3912 -2.4921 37 1 5.2318 -0.2994 -3.7485 38 1 3.8652 -1.0174 -4.6342 39 1 3.6473 0.5115 -3.7488 40 1 4.1764 -3.1493 -1.5987 41 1 4.1735 -3.1552 -3.3783 42 1 5.5408 -2.4372 -2.4929 43 1 5.9872 -1.2806 1.1887 44 1 7.0706 1.3013 1.5590 45 1 5.7767 2.1545 2.4548 46 1 9.8547 2.0226 6.4207 47 1 7.5815 0.3808 5.2864 48 1 8.9317 0.2124 4.1320 49 1 8.6670 -1.8187 2.8190 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220812524.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:51:05 Heat of formation + Delta-G solvation = -129.705506 kcal Electronic energy + Delta-G solvation = -29740.362819 eV Core-core repulsion = 25701.887815 eV Total energy + Delta-G solvation = -4038.475003 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.67756 -40.29837 -39.07354 -37.60627 -36.47117 -35.40183 -34.96972 -33.62635 -31.78834 -30.32689 -29.31209 -28.59196 -27.96323 -26.55514 -25.20567 -22.65903 -22.19263 -21.63324 -21.19036 -20.44949 -19.24161 -18.61940 -18.18482 -17.92521 -17.01118 -16.87999 -16.38985 -16.25807 -15.84443 -15.75596 -15.46120 -15.26547 -14.82498 -14.71978 -14.57477 -14.47417 -14.17332 -13.98413 -13.61165 -13.34648 -13.21075 -13.16920 -13.02349 -12.86631 -12.77305 -12.73814 -12.62422 -12.31469 -12.16539 -11.95191 -11.88928 -11.76347 -11.68910 -11.50856 -11.12211 -10.88426 -10.79107 -10.52315 -10.04373 -9.89060 -8.98100 -7.91673 -5.27747 1.42196 1.45958 1.52180 1.62648 1.76824 2.14068 2.44133 2.51283 3.16153 3.26676 3.55658 3.72423 3.79977 3.85793 3.93882 3.96491 4.09306 4.16192 4.20173 4.24143 4.47060 4.47998 4.57122 4.65619 4.70039 4.70852 4.78824 4.82136 4.90303 5.01006 5.05850 5.10368 5.11718 5.17877 5.32109 5.33306 5.43703 5.48910 5.49672 5.51506 5.59397 5.62019 6.11693 6.65069 6.71429 6.88903 7.04099 7.33858 7.54159 7.67253 8.31355 9.17858 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.015688 B = 0.003120 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.357967 B = 8971.210093 C = 9469.394099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.502 3.498 3 O -0.573 6.573 4 N -0.706 5.706 5 C 0.144 3.856 6 H 0.151 0.849 7 C -0.124 4.124 8 C -0.082 4.082 9 C -0.148 4.148 10 C -0.149 4.149 11 C 0.489 3.511 12 O -0.562 6.562 13 N -0.697 5.697 14 C 0.156 3.844 15 H 0.083 0.917 16 C 0.134 3.866 17 N -0.621 5.621 18 C -0.254 4.254 19 H 0.071 0.929 20 C -0.057 4.057 21 N -0.946 5.946 22 Si 0.981 3.019 23 H -0.281 1.281 24 H -0.285 1.285 25 H -0.278 1.278 26 C 0.160 3.840 27 C 0.097 3.903 28 H 0.095 0.905 29 O -0.562 6.562 30 H 0.111 0.889 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.423 0.577 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.051 0.949 38 H 0.070 0.930 39 H 0.037 0.963 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.055 0.945 43 H 0.418 0.582 44 H 0.022 0.978 45 H 0.015 0.985 46 H 0.251 0.749 47 H 0.024 0.976 48 H 0.029 0.971 49 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.008 -18.181 -16.525 28.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.290 3.710 3 O -0.450 6.450 4 N -0.361 5.361 5 C 0.035 3.965 6 H 0.168 0.832 7 C -0.163 4.163 8 C -0.101 4.101 9 C -0.206 4.206 10 C -0.206 4.206 11 C 0.275 3.725 12 O -0.439 6.439 13 N -0.350 5.350 14 C 0.048 3.952 15 H 0.101 0.899 16 C 0.008 3.992 17 N -0.348 5.348 18 C -0.382 4.382 19 H 0.089 0.911 20 C -0.250 4.250 21 N -0.594 5.594 22 Si 0.808 3.192 23 H -0.207 1.207 24 H -0.211 1.211 25 H -0.204 1.204 26 C 0.034 3.966 27 C 0.036 3.964 28 H 0.112 0.888 29 O -0.371 6.371 30 H 0.129 0.871 31 H 0.102 0.898 32 H 0.118 0.882 33 H 0.262 0.738 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.057 0.943 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.256 0.744 44 H 0.039 0.961 45 H 0.033 0.967 46 H 0.060 0.940 47 H 0.042 0.958 48 H 0.047 0.953 49 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -14.425 -16.549 -16.333 27.363 hybrid contribution 1.154 0.795 0.956 1.696 sum -13.271 -15.754 -15.378 25.706 Atomic orbital electron populations 1.21826 0.88843 1.06277 1.05077 1.21471 0.91985 0.83329 0.74200 1.90737 1.71587 1.33469 1.49253 1.45637 1.04924 1.09498 1.76036 1.20934 0.82582 1.02095 0.90908 0.83171 1.21949 1.01084 0.99970 0.93306 1.20999 1.00927 0.95598 0.92550 1.21834 1.01295 0.99628 0.97814 1.21930 1.00514 0.95277 1.02880 1.21836 0.81636 0.82260 0.86818 1.90741 1.57238 1.37255 1.58676 1.45593 1.13956 1.47051 1.28436 1.21807 0.94128 0.91492 0.87750 0.89861 1.21835 0.90952 0.95350 0.91109 1.44559 1.51436 1.03141 1.35701 1.19361 1.21677 0.84514 1.12684 0.91107 1.25599 0.99853 1.01365 0.98216 1.70098 1.36803 1.28128 1.24357 0.85136 0.77743 0.78872 0.77459 1.20685 1.21059 1.20377 1.21733 0.96619 0.83700 0.94523 1.23085 0.89941 0.94012 0.89342 0.88775 1.86209 1.43041 1.72885 1.34963 0.87074 0.89772 0.88167 0.73833 0.92835 0.91057 0.90507 0.92940 0.91086 0.94336 0.91108 0.91506 0.92617 0.74385 0.96062 0.96696 0.93976 0.95775 0.95327 0.75011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 10.39 71.24 0.74 -1.60 16 2 C 0.50 12.37 6.69 87.66 0.59 12.96 16 3 O -0.57 -21.59 12.96 19.43 0.25 -21.33 16 4 N -0.71 -12.22 4.57 -446.11 -2.04 -14.25 16 5 C 0.14 2.89 2.88 44.25 0.13 3.02 16 6 H 0.15 1.69 6.34 -2.39 -0.02 1.68 16 7 C -0.12 -2.70 4.01 30.59 0.12 -2.57 16 8 C -0.08 -1.19 2.86 -10.79 -0.03 -1.22 16 9 C -0.15 -2.33 9.19 71.98 0.66 -1.67 16 10 C -0.15 -1.43 8.95 71.98 0.64 -0.78 16 11 C 0.49 15.49 6.82 87.66 0.60 16.08 16 12 O -0.56 -23.89 13.37 19.42 0.26 -23.63 16 13 N -0.70 -21.22 5.18 -435.97 -2.26 -23.47 16 14 C 0.16 6.06 3.25 46.38 0.15 6.21 16 15 H 0.08 3.58 7.63 -2.38 -0.02 3.56 16 16 C 0.13 6.53 6.92 86.85 0.60 7.13 16 17 N -0.62 -34.46 3.40 -691.89 -2.35 -36.81 16 18 C -0.25 -15.33 10.28 84.04 0.86 -14.46 16 19 H 0.07 4.24 7.83 -2.91 -0.02 4.21 16 20 C -0.06 -3.34 5.49 84.86 0.47 -2.88 16 21 N -0.95 -56.83 10.31 21.65 0.22 -56.61 16 22 Si 0.98 47.49 29.55 68.60 2.03 49.52 16 23 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 24 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 25 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 26 C 0.16 7.82 5.14 86.73 0.45 8.26 16 27 C 0.10 3.42 4.20 31.78 0.13 3.55 16 28 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 29 O -0.56 -16.47 12.14 -148.98 -1.81 -18.28 16 30 H 0.11 0.68 7.91 -2.39 -0.02 0.66 16 31 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.42 3.35 8.67 -92.71 -0.80 2.55 16 34 H 0.05 1.64 6.04 -2.39 -0.01 1.63 16 35 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.08 1.02 7.62 -2.39 -0.02 1.00 16 37 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.07 0.45 6.46 -2.39 -0.02 0.44 16 41 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 43 H 0.42 10.30 7.57 -92.71 -0.70 9.59 16 44 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.01 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 47 H 0.02 1.31 7.38 -2.39 -0.02 1.29 16 48 H 0.03 1.52 7.43 -2.39 -0.02 1.50 16 49 H 0.40 8.58 9.12 -74.05 -0.68 7.90 16 Total: -1.00 -87.79 387.75 -0.78 -88.57 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: -1.20 Total: 24.27 kcal Atomic # 6 Polarization: 25.93 SS G_CDS: 6.11 Total: 32.04 kcal Atomic # 7 Polarization: -124.72 SS G_CDS: -6.42 Total: -131.14 kcal Atomic # 8 Polarization: -61.95 SS G_CDS: -1.30 Total: -63.25 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.52 kcal Total: -87.79 -0.78 -88.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220812524.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.137 kcal (2) G-P(sol) polarization free energy of solvation -87.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds