Wall clock time and date at job start Fri Apr 10 2020 14:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21278 * 119.99894 * 2 1 4 4 N 1.34768 * 119.99787 * 180.02562 * 2 1 3 5 5 C 1.46501 * 119.99866 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47344 * 300.00040 * 5 4 2 7 7 C 1.50702 * 109.47237 * 179.97438 * 5 4 2 8 8 O 1.21281 * 120.00092 * 144.99972 * 7 5 4 9 9 N 1.34777 * 120.00208 * 325.00366 * 7 5 4 10 10 C 1.46498 * 120.00174 * 179.97438 * 9 7 5 11 11 H 1.09007 * 110.88089 * 31.12425 * 10 9 7 12 12 C 1.55127 * 111.22780 * 267.20915 * 10 9 7 13 13 N 1.47418 * 104.72049 * 279.17514 * 12 10 9 14 14 C 1.36939 * 125.64946 * 155.81793 * 13 12 10 15 15 H 1.08005 * 119.99514 * 9.51155 * 14 13 12 16 16 C 1.38808 * 120.00603 * 189.50997 * 14 13 12 17 17 N 1.31615 * 120.00406 * 208.93981 * 16 14 13 18 18 Si 1.86804 * 119.99427 * 28.93699 * 16 14 13 19 19 H 1.48494 * 109.47441 * 275.30071 * 18 16 14 20 20 H 1.48505 * 109.46820 * 155.30094 * 18 16 14 21 21 H 1.48499 * 109.47051 * 35.30536 * 18 16 14 22 22 C 1.47018 * 108.70509 * 335.55383 * 13 12 10 23 23 C 1.54323 * 107.27391 * 1.28535 * 22 13 12 24 24 H 1.08992 * 110.72354 * 263.65910 * 23 22 13 25 25 O 1.42897 * 110.72146 * 140.55188 * 23 22 13 26 26 C 1.53005 * 109.46840 * 60.00258 * 5 4 2 27 27 C 1.52994 * 109.47037 * 65.00237 * 26 5 4 28 28 C 1.53002 * 109.46802 * 184.99960 * 26 5 4 29 29 H 1.09006 * 109.47204 * 240.00234 * 1 2 3 30 30 H 1.09006 * 109.47299 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.47271 * 119.99797 * 1 2 3 32 32 H 0.97003 * 120.00291 * 0.02562 * 4 2 1 33 33 H 1.08997 * 109.47219 * 300.00087 * 6 5 4 34 34 H 1.09006 * 109.46739 * 59.99785 * 6 5 4 35 35 H 1.08995 * 109.47463 * 179.97438 * 6 5 4 36 36 H 0.97001 * 119.99707 * 359.97438 * 9 7 5 37 37 H 1.09002 * 110.49644 * 160.33195 * 12 10 9 38 38 H 1.09000 * 110.34346 * 37.94214 * 12 10 9 39 39 H 0.96999 * 119.99831 * 4.81850 * 17 16 14 40 40 H 1.09002 * 109.88762 * 120.70676 * 22 13 12 41 41 H 1.09000 * 109.88266 * 241.87111 * 22 13 12 42 42 H 0.96698 * 113.99483 * 61.46274 * 25 23 22 43 43 H 1.08994 * 109.47035 * 304.99565 * 26 5 4 44 44 H 1.08994 * 109.47756 * 59.99770 * 27 26 5 45 45 H 1.09007 * 109.47011 * 179.97438 * 27 26 5 46 46 H 1.09006 * 109.46946 * 299.99572 * 27 26 5 47 47 H 1.08994 * 109.47483 * 299.99850 * 28 26 5 48 48 H 1.09001 * 109.47127 * 60.00015 * 28 26 5 49 49 H 1.08997 * 109.46997 * 180.02562 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6458 -1.1672 -0.0011 6 6 4.1554 -0.4457 -1.2503 7 6 4.1482 -2.5880 -0.0010 8 8 5.1612 -2.8731 -0.6037 9 7 3.4716 -3.5420 0.6689 10 6 3.9597 -4.9232 0.6686 11 1 5.0472 -4.9511 0.5990 12 6 3.3106 -5.7480 -0.4738 13 7 1.9874 -6.1347 0.0486 14 6 0.8914 -6.4508 -0.7091 15 1 0.9919 -6.5787 -1.7769 16 6 -0.3486 -6.6067 -0.1051 17 7 -1.2402 -7.4184 -0.6327 18 14 -0.7516 -5.6646 1.4568 19 1 -0.2367 -6.4115 2.6324 20 1 -2.2238 -5.5092 1.5751 21 1 -0.1151 -4.3240 1.4044 22 6 2.0411 -6.1311 1.5178 23 6 3.4629 -5.6889 1.9233 24 1 4.0934 -6.5549 2.1246 25 8 3.4184 -4.8231 3.0592 26 6 4.1563 -0.4462 1.2482 27 6 3.7520 -1.2368 2.4941 28 6 5.6811 -0.3365 1.1864 29 1 -0.3634 -0.5138 0.8900 30 1 -0.3634 1.0277 0.0005 31 1 -0.3633 -0.5138 -0.8900 32 1 1.6958 -2.0072 -0.0013 33 1 3.7917 -0.9592 -2.1403 34 1 3.7920 0.5820 -1.2499 35 1 5.2453 -0.4453 -1.2505 36 1 2.6615 -3.3139 1.1513 37 1 3.9066 -6.6344 -0.6908 38 1 3.2009 -5.1352 -1.3685 39 1 -1.0072 -7.9602 -1.4028 40 1 1.3074 -5.4290 1.9139 41 1 1.8417 -7.1328 1.8985 42 1 3.0424 -5.2318 3.8508 43 1 3.7217 0.5523 1.2945 44 1 4.1865 -2.2353 2.4479 45 1 4.1160 -0.7234 3.3842 46 1 2.6656 -1.3150 2.5382 47 1 6.1157 -1.3349 1.1401 48 1 5.9691 0.2267 0.2987 49 1 6.0448 0.1767 2.0765 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221128161.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:11 Heat of formation + Delta-G solvation = -88.231769 kcal Electronic energy + Delta-G solvation = -31403.343869 eV Core-core repulsion = 27366.667302 eV Total energy + Delta-G solvation = -4036.676567 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.10750 -39.39508 -38.31716 -36.18506 -35.44831 -34.07812 -33.48879 -32.06265 -30.75097 -29.12989 -28.80987 -27.90460 -26.80372 -24.76080 -23.76031 -22.02254 -21.00278 -20.83799 -20.02088 -19.16411 -18.08880 -17.55797 -17.24529 -16.60783 -16.27158 -15.58818 -15.38614 -15.21115 -14.66325 -14.52398 -14.34761 -13.93404 -13.71763 -13.56404 -13.39144 -13.16414 -12.75541 -12.74200 -12.46004 -12.41508 -12.32897 -12.23964 -12.15071 -11.97358 -11.74123 -11.43450 -11.29445 -11.14236 -10.99532 -10.91033 -10.78250 -10.57598 -10.14636 -10.03695 -9.63980 -9.37555 -9.34937 -9.13984 -8.89029 -8.58324 -7.24703 -6.50745 -3.32945 2.50948 2.62782 3.13843 3.22482 3.25575 3.31097 3.52981 4.14314 4.46643 4.49062 4.73020 4.74398 4.81275 4.91491 4.95922 5.09590 5.12910 5.21705 5.23028 5.34021 5.36916 5.40198 5.56704 5.66700 5.70815 5.72362 5.81143 5.83769 5.86069 5.91413 5.93296 6.06485 6.08980 6.18555 6.25388 6.30397 6.35042 6.38041 6.39894 6.47312 6.71831 7.38252 7.50848 7.63894 7.64783 8.12723 8.19466 8.29890 8.86992 9.41620 10.07268 10.98039 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.012542 B = 0.005405 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.982399 B = 5179.132942 C = 6062.753021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.519 3.481 3 O -0.542 6.542 4 N -0.726 5.726 5 C 0.168 3.832 6 C -0.151 4.151 7 C 0.523 3.477 8 O -0.534 6.534 9 N -0.693 5.693 10 C 0.137 3.863 11 H 0.101 0.899 12 C 0.123 3.877 13 N -0.602 5.602 14 C -0.333 4.333 15 H 0.079 0.921 16 C -0.013 4.013 17 N -0.909 5.909 18 Si 1.057 2.943 19 H -0.296 1.296 20 H -0.298 1.298 21 H -0.296 1.296 22 C 0.087 3.913 23 C 0.083 3.917 24 H 0.080 0.920 25 O -0.558 6.558 26 C -0.102 4.102 27 C -0.156 4.156 28 C -0.147 4.147 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.406 0.594 33 H 0.057 0.943 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.404 0.596 37 H 0.040 0.960 38 H 0.055 0.945 39 H 0.266 0.734 40 H 0.036 0.964 41 H 0.044 0.956 42 H 0.379 0.621 43 H 0.102 0.898 44 H 0.070 0.930 45 H 0.056 0.944 46 H 0.053 0.947 47 H 0.059 0.941 48 H 0.061 0.939 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.240 11.260 6.606 15.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.307 3.693 3 O -0.420 6.420 4 N -0.382 5.382 5 C 0.079 3.921 6 C -0.209 4.209 7 C 0.307 3.693 8 O -0.410 6.410 9 N -0.345 5.345 10 C 0.030 3.970 11 H 0.119 0.881 12 C -0.004 4.004 13 N -0.330 5.330 14 C -0.460 4.460 15 H 0.097 0.903 16 C -0.215 4.215 17 N -0.548 5.548 18 Si 0.891 3.109 19 H -0.225 1.225 20 H -0.226 1.226 21 H -0.224 1.224 22 C -0.039 4.039 23 C 0.023 3.977 24 H 0.097 0.903 25 O -0.363 6.363 26 C -0.121 4.121 27 C -0.214 4.214 28 C -0.205 4.205 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.242 0.758 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.240 0.760 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.053 0.947 41 H 0.062 0.938 42 H 0.226 0.774 43 H 0.120 0.880 44 H 0.089 0.911 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.078 0.922 48 H 0.080 0.920 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.379 12.465 6.754 16.468 hybrid contribution 0.151 -1.263 -0.432 1.344 sum 8.530 11.202 6.321 15.434 Atomic orbital electron populations 1.21970 0.91453 1.05472 1.04918 1.20765 0.90582 0.83139 0.74783 1.90638 1.70566 1.31353 1.49419 1.46285 1.06196 1.09650 1.76022 1.20659 0.80215 0.92818 0.98399 1.22105 1.02429 1.01569 0.94845 1.20309 0.84310 0.86220 0.78431 1.90691 1.24953 1.81907 1.43420 1.45752 1.28858 1.07814 1.52042 1.22321 0.99190 0.80974 0.94478 0.88105 1.22132 0.87521 0.95597 0.95135 1.44647 1.08092 1.80926 0.99369 1.20012 0.86404 1.47087 0.92485 0.90306 1.25754 0.92149 0.99592 1.03980 1.70873 1.38331 1.21652 1.23933 0.83907 0.74663 0.76340 0.76022 1.22459 1.22617 1.22371 1.22385 0.94521 0.99517 0.87477 1.23195 0.96715 0.92258 0.85528 0.90254 1.86457 1.86038 1.42154 1.21638 1.21488 0.96924 1.01171 0.92545 1.22016 1.01437 1.01118 0.96801 1.21902 0.94229 1.02484 1.01877 0.89153 0.88866 0.89023 0.75833 0.92389 0.89808 0.90327 0.75981 0.94201 0.92658 0.92386 0.94694 0.93799 0.77369 0.87992 0.91066 0.92485 0.92811 0.92207 0.91962 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.73 10.32 36.01 0.37 -1.36 16 2 C 0.52 6.63 7.35 -10.99 -0.08 6.55 16 3 O -0.54 -8.24 13.27 5.56 0.07 -8.16 16 4 N -0.73 -9.39 4.31 -48.68 -0.21 -9.60 16 5 C 0.17 2.32 0.47 -132.97 -0.06 2.25 16 6 C -0.15 -2.10 7.45 37.16 0.28 -1.83 16 7 C 0.52 8.14 4.98 -10.98 -0.05 8.09 16 8 O -0.53 -9.59 15.16 5.56 0.08 -9.50 16 9 N -0.69 -10.63 3.22 -51.61 -0.17 -10.80 16 10 C 0.14 2.18 3.31 -65.66 -0.22 1.96 16 11 H 0.10 1.57 7.54 -51.92 -0.39 1.18 16 12 C 0.12 2.32 6.95 -2.41 -0.02 2.31 16 13 N -0.60 -13.26 3.28 -169.94 -0.56 -13.82 16 14 C -0.33 -8.82 10.41 -15.06 -0.16 -8.97 16 15 H 0.08 2.25 8.06 -52.48 -0.42 1.82 16 16 C -0.01 -0.36 5.41 -17.43 -0.09 -0.45 16 17 N -0.91 -26.83 13.70 55.49 0.76 -26.07 16 18 Si 1.06 24.18 24.74 -169.99 -4.21 19.98 16 19 H -0.30 -6.39 6.74 56.52 0.38 -6.01 16 20 H -0.30 -7.08 7.11 56.52 0.40 -6.67 16 21 H -0.30 -6.11 6.87 56.52 0.39 -5.72 16 22 C 0.09 1.65 4.75 -3.07 -0.01 1.63 16 23 C 0.08 1.23 4.12 -24.89 -0.10 1.12 16 24 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 25 O -0.56 -7.12 12.67 -35.23 -0.45 -7.57 16 26 C -0.10 -1.30 2.16 -90.62 -0.20 -1.50 16 27 C -0.16 -1.91 8.12 37.15 0.30 -1.61 16 28 C -0.15 -1.78 8.50 37.16 0.32 -1.46 16 29 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.09 0.83 8.12 -51.93 -0.42 0.40 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.41 5.29 7.24 -40.82 -0.30 5.00 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 1.19 6.17 -51.93 -0.32 0.87 16 35 H 0.08 1.07 6.07 -51.93 -0.32 0.75 16 36 H 0.40 6.15 6.58 -40.82 -0.27 5.88 16 37 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.27 7.82 8.73 -40.82 -0.36 7.47 16 40 H 0.04 0.70 3.62 -51.93 -0.19 0.51 16 41 H 0.04 0.88 8.00 -51.93 -0.42 0.46 16 42 H 0.38 3.40 9.11 45.56 0.42 3.82 16 43 H 0.10 1.41 6.04 -51.93 -0.31 1.10 16 44 H 0.07 0.95 6.25 -51.93 -0.32 0.63 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.05 0.65 7.75 -51.93 -0.40 0.25 16 47 H 0.06 0.80 6.97 -51.93 -0.36 0.44 16 48 H 0.06 0.73 6.34 -51.93 -0.33 0.40 16 49 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 373.09 15.07 5.62 5.62 Total: -1.00 -31.75 373.09 -5.70 -37.45 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: -6.93 Total: 15.74 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: 0.27 Total: 6.73 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: -0.17 Total: -60.29 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.29 Total: -25.23 kcal Atomic # 14 Polarization: 24.18 SS G_CDS: -4.21 Total: 19.98 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.75 -5.70 -37.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221128161.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.783 kcal (2) G-P(sol) polarization free energy of solvation -31.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds