Wall clock time and date at job start Fri Apr 10 2020 14:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21278 * 119.99894 * 2 1 4 4 N 1.34768 * 119.99787 * 180.02562 * 2 1 3 5 5 C 1.46501 * 119.99866 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47344 * 300.00040 * 5 4 2 7 7 C 1.50702 * 109.47237 * 179.97438 * 5 4 2 8 8 O 1.21281 * 120.00092 * 144.99972 * 7 5 4 9 9 N 1.34777 * 120.00208 * 325.00366 * 7 5 4 10 10 C 1.46498 * 120.00174 * 179.97438 * 9 7 5 11 11 H 1.09007 * 110.88089 * 31.12425 * 10 9 7 12 12 C 1.55127 * 111.22780 * 267.20915 * 10 9 7 13 13 N 1.47418 * 104.72049 * 279.17514 * 12 10 9 14 14 C 1.36939 * 125.64946 * 155.81793 * 13 12 10 15 15 H 1.08005 * 119.99514 * 9.51155 * 14 13 12 16 16 C 1.38808 * 120.00603 * 189.50997 * 14 13 12 17 17 N 1.31615 * 120.00406 * 208.93981 * 16 14 13 18 18 Si 1.86804 * 119.99427 * 28.93699 * 16 14 13 19 19 H 1.48494 * 109.47441 * 275.30071 * 18 16 14 20 20 H 1.48505 * 109.46820 * 155.30094 * 18 16 14 21 21 H 1.48499 * 109.47051 * 35.30536 * 18 16 14 22 22 C 1.47018 * 108.70509 * 335.55383 * 13 12 10 23 23 C 1.54323 * 107.27391 * 1.28535 * 22 13 12 24 24 H 1.08992 * 110.72354 * 263.65910 * 23 22 13 25 25 O 1.42897 * 110.72146 * 140.55188 * 23 22 13 26 26 C 1.53005 * 109.46840 * 60.00258 * 5 4 2 27 27 C 1.52994 * 109.47037 * 65.00237 * 26 5 4 28 28 C 1.53002 * 109.46802 * 184.99960 * 26 5 4 29 29 H 1.09006 * 109.47204 * 240.00234 * 1 2 3 30 30 H 1.09006 * 109.47299 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.47271 * 119.99797 * 1 2 3 32 32 H 0.97003 * 120.00291 * 0.02562 * 4 2 1 33 33 H 1.08997 * 109.47219 * 300.00087 * 6 5 4 34 34 H 1.09006 * 109.46739 * 59.99785 * 6 5 4 35 35 H 1.08995 * 109.47463 * 179.97438 * 6 5 4 36 36 H 0.97001 * 119.99707 * 359.97438 * 9 7 5 37 37 H 1.09002 * 110.49644 * 160.33195 * 12 10 9 38 38 H 1.09000 * 110.34346 * 37.94214 * 12 10 9 39 39 H 0.96999 * 119.99831 * 4.81850 * 17 16 14 40 40 H 1.09002 * 109.88762 * 120.70676 * 22 13 12 41 41 H 1.09000 * 109.88266 * 241.87111 * 22 13 12 42 42 H 0.96698 * 113.99483 * 61.46274 * 25 23 22 43 43 H 1.08994 * 109.47035 * 304.99565 * 26 5 4 44 44 H 1.08994 * 109.47756 * 59.99770 * 27 26 5 45 45 H 1.09007 * 109.47011 * 179.97438 * 27 26 5 46 46 H 1.09006 * 109.46946 * 299.99572 * 27 26 5 47 47 H 1.08994 * 109.47483 * 299.99850 * 28 26 5 48 48 H 1.09001 * 109.47127 * 60.00015 * 28 26 5 49 49 H 1.08997 * 109.46997 * 180.02562 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6458 -1.1672 -0.0011 6 6 4.1554 -0.4457 -1.2503 7 6 4.1482 -2.5880 -0.0010 8 8 5.1612 -2.8731 -0.6037 9 7 3.4716 -3.5420 0.6689 10 6 3.9597 -4.9232 0.6686 11 1 5.0472 -4.9511 0.5990 12 6 3.3106 -5.7480 -0.4738 13 7 1.9874 -6.1347 0.0486 14 6 0.8914 -6.4508 -0.7091 15 1 0.9919 -6.5787 -1.7769 16 6 -0.3486 -6.6067 -0.1051 17 7 -1.2402 -7.4184 -0.6327 18 14 -0.7516 -5.6646 1.4568 19 1 -0.2367 -6.4115 2.6324 20 1 -2.2238 -5.5092 1.5751 21 1 -0.1151 -4.3240 1.4044 22 6 2.0411 -6.1311 1.5178 23 6 3.4629 -5.6889 1.9233 24 1 4.0934 -6.5549 2.1246 25 8 3.4184 -4.8231 3.0592 26 6 4.1563 -0.4462 1.2482 27 6 3.7520 -1.2368 2.4941 28 6 5.6811 -0.3365 1.1864 29 1 -0.3634 -0.5138 0.8900 30 1 -0.3634 1.0277 0.0005 31 1 -0.3633 -0.5138 -0.8900 32 1 1.6958 -2.0072 -0.0013 33 1 3.7917 -0.9592 -2.1403 34 1 3.7920 0.5820 -1.2499 35 1 5.2453 -0.4453 -1.2505 36 1 2.6615 -3.3139 1.1513 37 1 3.9066 -6.6344 -0.6908 38 1 3.2009 -5.1352 -1.3685 39 1 -1.0072 -7.9602 -1.4028 40 1 1.3074 -5.4290 1.9139 41 1 1.8417 -7.1328 1.8985 42 1 3.0424 -5.2318 3.8508 43 1 3.7217 0.5523 1.2945 44 1 4.1865 -2.2353 2.4479 45 1 4.1160 -0.7234 3.3842 46 1 2.6656 -1.3150 2.5382 47 1 6.1157 -1.3349 1.1401 48 1 5.9691 0.2267 0.2987 49 1 6.0448 0.1767 2.0765 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221128161.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:10 Heat of formation + Delta-G solvation = -114.101613 kcal Electronic energy + Delta-G solvation = -31404.465670 eV Core-core repulsion = 27366.667302 eV Total energy + Delta-G solvation = -4037.798368 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.25458 -40.59868 -39.58791 -37.30238 -36.73897 -35.49473 -34.57343 -33.88843 -31.73225 -30.63319 -29.80804 -29.34650 -27.78662 -26.20420 -25.21463 -23.12820 -22.59828 -21.91744 -21.40733 -20.31827 -19.58487 -19.05711 -18.39660 -17.68956 -17.49459 -16.89899 -16.68797 -16.32773 -16.02654 -15.83225 -15.50276 -15.39709 -14.99231 -14.78861 -14.61120 -14.48756 -14.18721 -13.92925 -13.67503 -13.50592 -13.34177 -13.25755 -13.20725 -13.06978 -13.02718 -12.92145 -12.76858 -12.53416 -12.20081 -11.97837 -11.91776 -11.79452 -11.70955 -11.39400 -11.19459 -10.92933 -10.56683 -10.50562 -10.20813 -10.16315 -9.12222 -8.67093 -5.40509 1.34532 1.41983 1.52669 1.60634 1.73969 1.95328 2.15552 2.58076 2.88338 3.14397 3.33529 3.40233 3.63788 3.66264 3.70487 3.86106 3.89938 4.12574 4.13885 4.32452 4.41481 4.47331 4.51667 4.52828 4.63025 4.66903 4.70074 4.75518 4.79749 4.81442 4.83666 4.93012 4.93989 4.95340 5.06458 5.07320 5.16757 5.24310 5.35976 5.41520 5.45758 5.58346 6.09009 6.34735 6.42531 6.80012 6.83385 7.04236 7.15718 7.44886 8.10184 8.83471 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.012542 B = 0.005405 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.982399 B = 5179.132942 C = 6062.753021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.517 3.483 3 O -0.568 6.568 4 N -0.725 5.725 5 C 0.169 3.831 6 C -0.146 4.146 7 C 0.525 3.475 8 O -0.559 6.559 9 N -0.688 5.688 10 C 0.143 3.857 11 H 0.111 0.889 12 C 0.122 3.878 13 N -0.616 5.616 14 C -0.322 4.322 15 H 0.040 0.960 16 C -0.069 4.069 17 N -0.948 5.948 18 Si 1.100 2.900 19 H -0.272 1.272 20 H -0.312 1.312 21 H -0.259 1.259 22 C 0.079 3.921 23 C 0.106 3.894 24 H 0.106 0.894 25 O -0.555 6.555 26 C -0.096 4.096 27 C -0.150 4.150 28 C -0.144 4.144 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.406 0.594 33 H 0.046 0.954 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.407 0.593 37 H 0.046 0.954 38 H 0.034 0.966 39 H 0.249 0.751 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.400 0.600 43 H 0.095 0.905 44 H 0.062 0.938 45 H 0.069 0.931 46 H 0.055 0.945 47 H 0.045 0.955 48 H 0.061 0.939 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.065 12.580 9.428 18.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.306 3.694 3 O -0.448 6.448 4 N -0.379 5.379 5 C 0.080 3.920 6 C -0.204 4.204 7 C 0.311 3.689 8 O -0.437 6.437 9 N -0.339 5.339 10 C 0.036 3.964 11 H 0.129 0.871 12 C -0.004 4.004 13 N -0.345 5.345 14 C -0.451 4.451 15 H 0.058 0.942 16 C -0.263 4.263 17 N -0.590 5.590 18 Si 0.927 3.073 19 H -0.198 1.198 20 H -0.241 1.241 21 H -0.185 1.185 22 C -0.046 4.046 23 C 0.046 3.954 24 H 0.124 0.876 25 O -0.363 6.363 26 C -0.116 4.116 27 C -0.208 4.208 28 C -0.202 4.202 29 H 0.124 0.876 30 H 0.120 0.880 31 H 0.117 0.883 32 H 0.242 0.758 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.244 0.756 37 H 0.064 0.936 38 H 0.052 0.948 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.251 0.749 43 H 0.113 0.887 44 H 0.080 0.920 45 H 0.088 0.912 46 H 0.074 0.926 47 H 0.065 0.935 48 H 0.080 0.920 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.241 13.792 9.606 19.180 hybrid contribution -0.044 -1.705 -1.420 2.219 sum 9.196 12.087 8.186 17.253 Atomic orbital electron populations 1.22007 0.88865 1.06480 1.06011 1.21317 0.91761 0.82466 0.73824 1.90629 1.71359 1.32146 1.50631 1.46295 1.05759 1.09876 1.76007 1.20630 0.80888 0.91658 0.98864 1.22042 1.02457 1.01230 0.94662 1.20565 0.83845 0.86823 0.77702 1.90680 1.26145 1.82436 1.44432 1.45715 1.28855 1.07529 1.51822 1.22203 0.99368 0.80849 0.93932 0.87108 1.22187 0.86479 0.96084 0.95690 1.44589 1.07793 1.81103 1.00982 1.19811 0.88233 1.45630 0.91383 0.94230 1.27070 0.92217 0.99830 1.07227 1.71004 1.39501 1.23858 1.24676 0.83404 0.73935 0.76892 0.73065 1.19810 1.24145 1.18489 1.22586 0.97590 0.99262 0.85122 1.22938 0.93966 0.92820 0.85705 0.87601 1.86435 1.86103 1.41956 1.21812 1.21441 0.97216 1.00608 0.92293 1.21961 1.01482 1.00515 0.96823 1.21876 0.93695 1.01844 1.02764 0.87552 0.88002 0.88260 0.75800 0.93445 0.90071 0.90251 0.75631 0.93598 0.94771 0.94206 0.94544 0.94520 0.74923 0.88724 0.91953 0.91180 0.92633 0.93539 0.92028 0.90759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.95 10.32 71.24 0.74 -2.21 16 2 C 0.52 12.27 7.35 87.66 0.64 12.92 16 3 O -0.57 -16.52 13.27 -3.02 -0.04 -16.56 16 4 N -0.72 -17.52 4.31 -426.33 -1.84 -19.35 16 5 C 0.17 4.43 0.47 2.86 0.00 4.43 16 6 C -0.15 -3.98 7.45 71.98 0.54 -3.45 16 7 C 0.52 15.60 4.98 87.66 0.44 16.04 16 8 O -0.56 -19.57 15.16 -3.03 -0.05 -19.61 16 9 N -0.69 -19.54 3.22 -435.59 -1.40 -20.94 16 10 C 0.14 4.20 3.31 46.46 0.15 4.35 16 11 H 0.11 3.14 7.54 -2.38 -0.02 3.13 16 12 C 0.12 4.50 6.95 86.93 0.60 5.11 16 13 N -0.62 -26.61 3.28 -691.57 -2.27 -28.88 16 14 C -0.32 -17.38 10.41 84.03 0.87 -16.50 16 15 H 0.04 2.38 8.06 -2.91 -0.02 2.36 16 16 C -0.07 -3.78 5.41 84.86 0.46 -3.32 16 17 N -0.95 -57.71 13.70 21.65 0.30 -57.41 16 18 Si 1.10 47.34 24.74 68.60 1.70 49.03 16 19 H -0.27 -10.54 6.74 99.48 0.67 -9.87 16 20 H -0.31 -14.16 7.11 99.48 0.71 -13.46 16 21 H -0.26 -9.48 6.87 99.48 0.68 -8.80 16 22 C 0.08 2.78 4.75 86.73 0.41 3.19 16 23 C 0.11 2.71 4.12 31.78 0.13 2.84 16 24 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 25 O -0.56 -11.44 12.67 -148.98 -1.89 -13.33 16 26 C -0.10 -2.27 2.16 -10.79 -0.02 -2.29 16 27 C -0.15 -3.22 8.12 71.98 0.58 -2.64 16 28 C -0.14 -3.22 8.50 71.98 0.61 -2.61 16 29 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 30 H 0.10 1.56 8.12 -2.38 -0.02 1.54 16 31 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.41 9.78 7.24 -92.71 -0.67 9.11 16 33 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.08 2.26 6.17 -2.38 -0.01 2.25 16 35 H 0.08 2.13 6.07 -2.39 -0.01 2.11 16 36 H 0.41 11.14 6.58 -92.71 -0.61 10.53 16 37 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.25 15.42 8.73 -92.71 -0.81 14.61 16 40 H 0.04 1.30 3.62 -2.39 -0.01 1.29 16 41 H 0.04 1.36 8.00 -2.39 -0.02 1.34 16 42 H 0.40 4.98 9.11 -74.06 -0.67 4.31 16 43 H 0.09 2.45 6.04 -2.39 -0.01 2.43 16 44 H 0.06 1.46 6.25 -2.39 -0.01 1.45 16 45 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 46 H 0.05 1.16 7.75 -2.38 -0.02 1.14 16 47 H 0.05 1.17 6.97 -2.39 -0.02 1.15 16 48 H 0.06 1.36 6.34 -2.39 -0.02 1.35 16 49 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -70.62 373.09 -0.39 -71.00 By element: Atomic # 1 Polarization: 41.24 SS G_CDS: -1.06 Total: 40.19 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: 6.16 Total: 15.86 kcal Atomic # 7 Polarization: -121.37 SS G_CDS: -5.21 Total: -126.58 kcal Atomic # 8 Polarization: -47.53 SS G_CDS: -1.97 Total: -49.50 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 1.70 Total: 49.03 kcal Total: -70.62 -0.39 -71.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221128161.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.098 kcal (2) G-P(sol) polarization free energy of solvation -70.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds