Wall clock time and date at job start Fri Apr 10 2020 14:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46646 * 2 1 4 4 C 1.53000 * 109.47006 * 119.99679 * 2 1 3 5 5 C 1.53001 * 109.46867 * 176.92346 * 4 2 1 6 6 H 1.08992 * 109.47277 * 53.59433 * 5 4 2 7 7 C 1.50702 * 109.46731 * 173.59480 * 5 4 2 8 8 N 1.34776 * 120.00213 * 286.96085 * 7 5 4 9 9 O 1.21288 * 119.99958 * 106.97107 * 7 5 4 10 10 C 1.50704 * 109.47040 * 293.59235 * 5 4 2 11 11 O 1.21281 * 120.00084 * 0.02562 * 10 5 4 12 12 N 1.34778 * 119.99633 * 180.02562 * 10 5 4 13 13 C 1.46503 * 119.99917 * 180.02562 * 12 10 5 14 14 C 1.52999 * 109.47124 * 175.53769 * 13 12 10 15 15 H 1.08998 * 109.67895 * 304.89115 * 14 13 12 16 16 C 1.53296 * 109.67865 * 184.37335 * 14 13 12 17 17 O 1.42957 * 109.22057 * 187.97579 * 16 14 13 18 18 C 1.42960 * 114.17103 * 62.58029 * 17 16 14 19 19 C 1.53297 * 109.22177 * 297.42251 * 18 17 16 20 20 N 1.47144 * 108.38515 * 52.29923 * 19 18 17 21 21 C 1.36937 * 120.98513 * 129.49030 * 20 19 18 22 22 H 1.08002 * 120.00436 * 147.40338 * 21 20 19 23 23 C 1.38820 * 119.99635 * 327.40185 * 21 20 19 24 24 N 1.31622 * 119.99603 * 156.82675 * 23 21 20 25 25 Si 1.86790 * 119.99948 * 336.82955 * 23 21 20 26 26 H 1.48501 * 109.47529 * 89.16028 * 25 23 21 27 27 H 1.48499 * 109.47305 * 209.15940 * 25 23 21 28 28 H 1.48506 * 109.47410 * 329.16008 * 25 23 21 29 29 H 1.08994 * 109.47621 * 299.99668 * 1 2 3 30 30 H 1.09000 * 109.47391 * 60.00606 * 1 2 3 31 31 H 1.09005 * 109.46851 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47096 * 240.00358 * 2 1 3 33 33 H 1.09002 * 109.46893 * 186.31109 * 3 2 1 34 34 H 1.09001 * 109.47419 * 306.31580 * 3 2 1 35 35 H 1.09007 * 109.47380 * 66.31369 * 3 2 1 36 36 H 1.09001 * 109.47060 * 56.92541 * 4 2 1 37 37 H 1.09002 * 109.47423 * 296.92306 * 4 2 1 38 38 H 0.97000 * 119.99864 * 5.88492 * 8 7 5 39 39 H 0.96993 * 119.99952 * 185.87937 * 8 7 5 40 40 H 0.97006 * 120.00178 * 359.97438 * 12 10 5 41 41 H 1.09007 * 109.46749 * 295.53727 * 13 12 10 42 42 H 1.08998 * 109.47209 * 55.53543 * 13 12 10 43 43 H 1.09005 * 109.51365 * 307.89801 * 16 14 13 44 44 H 1.08995 * 109.51438 * 68.00076 * 16 14 13 45 45 H 1.09000 * 109.51222 * 57.34428 * 18 17 16 46 46 H 1.08999 * 109.51743 * 177.49537 * 18 17 16 47 47 H 1.09004 * 109.68098 * 172.02415 * 19 18 17 48 48 H 1.09004 * 109.67915 * 292.57495 * 19 18 17 49 49 H 0.97004 * 119.99213 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5680 -0.7886 1.2112 6 1 3.9725 0.2135 1.0686 7 6 4.0783 -1.3561 2.5106 8 7 4.0427 -0.6097 3.6322 9 8 4.5213 -2.4846 2.5471 10 6 4.0036 -1.6729 0.0713 11 8 3.1735 -2.1973 -0.6408 12 7 5.3155 -1.8811 -0.1568 13 6 5.7390 -2.7404 -1.2653 14 6 7.2651 -2.7199 -1.3722 15 1 7.6126 -1.6912 -1.4670 16 6 7.7077 -3.5294 -2.5964 17 8 9.1312 -3.6610 -2.5841 18 6 9.6432 -4.3762 -1.4571 19 6 9.2996 -3.6102 -0.1745 20 7 7.8542 -3.3343 -0.1718 21 6 7.0803 -3.6398 0.9158 22 1 6.2275 -3.0245 1.1617 23 6 7.3921 -4.7403 1.7024 24 7 6.9808 -4.7941 2.9515 25 14 8.3951 -6.1448 0.9880 26 1 9.8408 -5.8765 1.1959 27 1 8.0245 -7.4128 1.6661 28 1 8.1176 -6.2617 -0.4662 29 1 -0.3634 0.5137 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 3.1240 1.4446 -0.1130 34 1 1.5872 1.9879 -0.8280 35 1 1.7717 1.9227 0.9411 36 1 1.6323 -1.7317 1.2773 37 1 1.7224 -0.1765 2.1384 38 1 3.6117 0.2593 3.6230 39 1 4.4479 -0.9414 4.4486 40 1 5.9794 -1.4614 0.4125 41 1 5.4010 -3.7607 -1.0836 42 1 5.3046 -2.3740 -2.1954 43 1 7.2504 -4.5184 -2.5638 44 1 7.3968 -3.0144 -3.5053 45 1 9.1930 -5.3682 -1.4204 46 1 10.7255 -4.4699 -1.5464 47 1 9.5597 -4.2142 0.6947 48 1 9.8526 -2.6712 -0.1485 49 1 7.1990 -5.5630 3.5012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754975054.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:51:14 Heat of formation + Delta-G solvation = -114.867941 kcal Electronic energy + Delta-G solvation = -30693.126071 eV Core-core repulsion = 26655.294472 eV Total energy + Delta-G solvation = -4037.831598 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.63485 -40.40249 -39.45686 -37.54560 -36.73067 -35.27019 -34.49714 -33.51916 -32.79918 -31.80624 -29.20176 -27.92781 -27.30779 -25.52529 -25.25041 -23.73938 -22.54350 -21.34598 -21.04645 -20.58380 -19.03532 -18.50906 -17.97214 -17.63975 -17.50946 -17.11351 -16.79595 -16.26493 -16.09561 -16.03902 -15.61859 -15.47531 -15.36699 -14.89518 -14.78164 -14.64186 -14.23495 -14.15757 -13.97257 -13.55947 -13.40903 -13.14748 -12.99152 -12.91039 -12.87405 -12.48998 -12.48612 -12.14388 -11.94934 -11.81657 -11.60560 -11.56910 -11.47735 -11.26018 -10.88592 -10.75577 -10.57673 -10.44349 -10.40186 -9.76633 -8.71097 -7.95830 -5.33749 1.23303 1.37521 1.42769 1.60026 1.77647 2.32856 2.49983 2.78770 2.84991 3.10472 3.31037 3.60357 3.85902 3.93486 3.97073 4.09363 4.18578 4.20205 4.26432 4.26981 4.32373 4.36892 4.48442 4.53960 4.64545 4.67981 4.73822 4.81730 4.89129 4.89600 4.93803 5.01354 5.05394 5.11951 5.20699 5.24256 5.39521 5.53084 5.58875 5.69091 6.00617 6.05601 6.12834 6.48318 6.59890 6.66064 7.05786 7.32299 7.57393 7.74042 8.14406 9.17649 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.015188 B = 0.004452 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.153607 B = 6288.240722 C = 7419.311856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.102 4.102 3 C -0.146 4.146 4 C -0.081 4.081 5 C -0.120 4.120 6 H 0.153 0.847 7 C 0.500 3.500 8 N -0.834 5.834 9 O -0.542 6.542 10 C 0.525 3.475 11 O -0.575 6.575 12 N -0.694 5.694 13 C 0.142 3.858 14 C 0.129 3.871 15 H 0.070 0.930 16 C 0.049 3.951 17 O -0.383 6.383 18 C 0.030 3.970 19 C 0.092 3.908 20 N -0.619 5.619 21 C -0.263 4.263 22 H 0.127 0.873 23 C -0.020 4.020 24 N -0.924 5.924 25 Si 0.898 3.102 26 H -0.270 1.270 27 H -0.329 1.329 28 H -0.259 1.259 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.038 0.962 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.042 0.958 37 H 0.103 0.897 38 H 0.417 0.583 39 H 0.405 0.595 40 H 0.406 0.594 41 H 0.033 0.967 42 H 0.089 0.911 43 H 0.034 0.966 44 H 0.128 0.872 45 H 0.038 0.962 46 H 0.117 0.883 47 H 0.058 0.942 48 H 0.055 0.945 49 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.482 16.548 -4.796 18.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 C -0.204 4.204 4 C -0.119 4.119 5 C -0.144 4.144 6 H 0.170 0.830 7 C 0.283 3.717 8 N -0.400 5.400 9 O -0.417 6.417 10 C 0.312 3.688 11 O -0.456 6.456 12 N -0.344 5.344 13 C 0.018 3.982 14 C 0.023 3.977 15 H 0.088 0.912 16 C -0.030 4.030 17 O -0.301 6.301 18 C -0.048 4.048 19 C -0.033 4.033 20 N -0.346 5.346 21 C -0.392 4.392 22 H 0.143 0.857 23 C -0.216 4.216 24 N -0.569 5.569 25 Si 0.730 3.270 26 H -0.197 1.197 27 H -0.260 1.260 28 H -0.185 1.185 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.121 0.879 38 H 0.249 0.751 39 H 0.237 0.763 40 H 0.243 0.757 41 H 0.052 0.948 42 H 0.107 0.893 43 H 0.053 0.947 44 H 0.146 0.854 45 H 0.056 0.944 46 H 0.135 0.865 47 H 0.076 0.924 48 H 0.073 0.927 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -6.696 15.438 -5.483 17.698 hybrid contribution 0.737 -1.542 1.006 1.983 sum -5.959 13.897 -4.477 15.769 Atomic orbital electron populations 1.21762 0.94372 1.01127 1.02533 1.21184 0.96516 0.96839 0.97511 1.21912 1.00860 0.94475 1.03106 1.21396 0.88930 1.01132 1.00425 1.21659 1.00690 1.01814 0.90279 0.82951 1.20599 0.78571 0.85959 0.86603 1.43526 1.61443 1.23039 1.11967 1.91156 1.44866 1.19621 1.86040 1.20347 0.82189 0.81213 0.85071 1.90604 1.52448 1.51741 1.50765 1.45997 1.07135 1.48675 1.32632 1.21097 0.93604 0.94002 0.89528 1.21703 0.91515 0.97137 0.87320 0.91218 1.23099 0.81208 0.99447 0.99214 1.87821 1.21525 1.76696 1.44099 1.23428 1.00214 0.94301 0.86878 1.21960 0.85531 0.98996 0.96818 1.44771 1.02830 1.73202 1.13793 1.20010 1.11357 1.07921 0.99879 0.85651 1.25964 0.99749 0.99495 0.96405 1.70071 1.50270 1.29870 1.06652 0.86789 0.79461 0.81450 0.79263 1.19727 1.25969 1.18485 0.91153 0.92071 0.94310 0.92221 0.92770 0.92165 0.90517 0.93929 0.87882 0.75142 0.76343 0.75698 0.94819 0.89331 0.94716 0.85398 0.94439 0.86527 0.92433 0.92722 0.94343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.19 71.98 0.66 -1.88 16 2 C -0.10 -2.12 2.73 -10.79 -0.03 -2.15 16 3 C -0.15 -2.09 8.75 71.98 0.63 -1.46 16 4 C -0.08 -1.86 3.80 30.59 0.12 -1.74 16 5 C -0.12 -3.18 2.39 -12.28 -0.03 -3.21 16 6 H 0.15 2.77 6.35 -2.39 -0.02 2.75 16 7 C 0.50 16.00 7.13 87.66 0.63 16.63 16 8 N -0.83 -17.41 8.87 -173.52 -1.54 -18.95 16 9 O -0.54 -25.83 14.91 -3.06 -0.05 -25.88 16 10 C 0.53 19.01 6.25 87.66 0.55 19.56 16 11 O -0.58 -23.93 14.06 -3.03 -0.04 -23.98 16 12 N -0.69 -25.77 3.34 -463.04 -1.54 -27.31 16 13 C 0.14 5.33 4.55 86.38 0.39 5.72 16 14 C 0.13 4.69 3.17 44.97 0.14 4.83 16 15 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 16 C 0.05 1.62 6.29 72.08 0.45 2.07 16 17 O -0.38 -13.52 10.74 -148.98 -1.60 -15.12 16 18 C 0.03 1.09 6.48 72.08 0.47 1.56 16 19 C 0.09 3.83 5.57 86.36 0.48 4.31 16 20 N -0.62 -27.86 2.71 -673.72 -1.82 -29.69 16 21 C -0.26 -14.22 8.41 84.04 0.71 -13.52 16 22 H 0.13 6.89 2.95 -2.91 -0.01 6.88 16 23 C -0.02 -1.19 5.22 84.86 0.44 -0.74 16 24 N -0.92 -58.98 13.97 21.65 0.30 -58.68 16 25 Si 0.90 46.58 23.81 68.60 1.63 48.22 16 26 H -0.27 -13.02 6.40 99.48 0.64 -12.38 16 27 H -0.33 -18.18 7.11 99.48 0.71 -17.48 16 28 H -0.26 -12.92 5.44 99.48 0.54 -12.38 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.06 1.67 6.03 -2.39 -0.01 1.65 16 33 H 0.05 0.77 6.70 -2.39 -0.02 0.75 16 34 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 36 H 0.04 1.29 7.91 -2.39 -0.02 1.27 16 37 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.42 4.61 8.84 -92.71 -0.82 3.79 16 39 H 0.41 8.98 8.93 -92.71 -0.83 8.15 16 40 H 0.41 15.21 7.01 -92.70 -0.65 14.56 16 41 H 0.03 1.55 7.82 -2.38 -0.02 1.53 16 42 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 43 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 44 H 0.13 3.20 8.14 -2.39 -0.02 3.19 16 45 H 0.04 1.54 4.95 -2.39 -0.01 1.53 16 46 H 0.12 3.54 8.14 -2.39 -0.02 3.52 16 47 H 0.06 2.68 3.92 -2.38 -0.01 2.67 16 48 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 49 H 0.25 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -81.89 368.68 -0.58 -82.47 By element: Atomic # 1 Polarization: 40.47 SS G_CDS: -1.53 Total: 38.94 kcal Atomic # 6 Polarization: 24.38 SS G_CDS: 5.61 Total: 29.98 kcal Atomic # 7 Polarization: -130.02 SS G_CDS: -4.61 Total: -134.63 kcal Atomic # 8 Polarization: -63.29 SS G_CDS: -1.69 Total: -64.98 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 1.63 Total: 48.22 kcal Total: -81.89 -0.58 -82.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754975054.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.403 kcal (2) G-P(sol) polarization free energy of solvation -81.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds