Wall clock time and date at job start Fri Apr 10 2020 14:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47150 * 2 1 4 4 C 1.52994 * 109.47227 * 120.00505 * 2 1 3 5 5 C 1.53002 * 109.47493 * 172.63308 * 4 2 1 6 6 H 1.09004 * 109.47096 * 53.30409 * 5 4 2 7 7 C 1.50698 * 109.46796 * 293.30914 * 5 4 2 8 8 N 1.34778 * 120.00103 * 74.12983 * 7 5 4 9 9 O 1.21283 * 120.00131 * 253.85595 * 7 5 4 10 10 C 1.50702 * 109.47358 * 173.31103 * 5 4 2 11 11 O 1.21283 * 119.99982 * 359.97438 * 10 5 4 12 12 N 1.34773 * 119.99782 * 179.97438 * 10 5 4 13 13 C 1.46500 * 119.99748 * 179.97438 * 12 10 5 14 14 C 1.52996 * 109.47051 * 180.02562 * 13 12 10 15 15 H 1.09003 * 109.68365 * 59.99900 * 14 13 12 16 16 C 1.53293 * 109.68411 * 180.51964 * 14 13 12 17 17 O 1.42973 * 109.22049 * 171.98460 * 16 14 13 18 18 C 1.42960 * 114.20044 * 297.47912 * 17 16 14 19 19 C 1.53290 * 109.22481 * 62.56121 * 18 17 16 20 20 N 1.47150 * 109.68098 * 299.48433 * 14 13 12 21 21 C 1.36935 * 120.98405 * 9.76089 * 20 14 13 22 22 H 1.07999 * 119.99631 * 330.65035 * 21 20 14 23 23 C 1.38815 * 119.99894 * 150.64700 * 21 20 14 24 24 N 1.31615 * 120.00469 * 342.85514 * 23 21 20 25 25 Si 1.86802 * 119.99738 * 162.85469 * 23 21 20 26 26 H 1.48491 * 109.47464 * 90.00003 * 25 23 21 27 27 H 1.48502 * 109.47194 * 210.00284 * 25 23 21 28 28 H 1.48506 * 109.47309 * 329.99748 * 25 23 21 29 29 H 1.08992 * 109.47133 * 299.99532 * 1 2 3 30 30 H 1.09003 * 109.47062 * 60.00167 * 1 2 3 31 31 H 1.09005 * 109.47108 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47277 * 240.00421 * 2 1 3 33 33 H 1.08999 * 109.47180 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47169 * 300.00394 * 3 2 1 35 35 H 1.09002 * 109.46687 * 60.00060 * 3 2 1 36 36 H 1.08998 * 109.47397 * 52.62520 * 4 2 1 37 37 H 1.09004 * 109.46876 * 292.62953 * 4 2 1 38 38 H 0.97001 * 120.00110 * 4.24401 * 8 7 5 39 39 H 0.96996 * 120.00300 * 184.23571 * 8 7 5 40 40 H 0.97002 * 119.99965 * 0.02562 * 12 10 5 41 41 H 1.09006 * 109.47419 * 300.00145 * 13 12 10 42 42 H 1.08994 * 109.47419 * 60.00105 * 13 12 10 43 43 H 1.09009 * 109.51466 * 291.94853 * 16 14 13 44 44 H 1.08999 * 109.51294 * 52.10013 * 16 14 13 45 45 H 1.09008 * 109.51387 * 302.63514 * 18 17 16 46 46 H 1.08997 * 109.55609 * 182.51426 * 18 17 16 47 47 H 1.09003 * 109.68173 * 187.97520 * 19 18 17 48 48 H 1.08994 * 109.71210 * 67.43789 * 19 18 17 49 49 H 0.96996 * 120.00298 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5588 -0.8835 1.1601 6 1 4.0175 0.0874 0.9727 7 6 3.8982 -1.8252 0.0336 8 7 3.7904 -1.4130 -1.2450 9 8 4.2731 -2.9525 0.2777 10 6 4.0811 -1.4439 2.4579 11 8 3.3142 -1.6890 3.3649 12 7 5.4005 -1.6727 2.6106 13 6 5.9083 -2.2169 3.8724 14 6 7.4270 -2.3792 3.7833 15 1 7.8894 -1.4101 3.5955 16 6 7.9621 -2.9607 5.0968 17 8 9.3462 -3.2825 4.9398 18 6 9.6069 -4.2833 3.9527 19 6 9.1562 -3.7687 2.5809 20 7 7.7630 -3.3082 2.6927 21 6 6.8076 -3.7315 1.8077 22 1 5.7765 -3.8048 2.1205 23 6 7.1644 -4.0663 0.5087 24 7 8.3209 -3.6702 0.0210 25 14 6.0030 -5.0791 -0.5473 26 1 5.0955 -4.1722 -1.2948 27 1 6.7903 -5.8934 -1.5077 28 1 5.2002 -5.9771 0.3213 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.5730 -1.7038 1.3175 37 1 1.7883 -0.1371 2.1343 38 1 3.5540 -0.4925 -1.4396 39 1 3.9493 -2.0366 -1.9707 40 1 6.0139 -1.4763 1.8852 41 1 5.6632 -1.5353 4.6869 42 1 5.4493 -3.1875 4.0604 43 1 7.8466 -2.2262 5.8940 44 1 7.4054 -3.8632 5.3490 45 1 9.0560 -5.1909 4.2001 46 1 10.6745 -4.5011 3.9271 47 1 9.2193 -4.5732 1.8481 48 1 9.7930 -2.9399 2.2718 49 1 8.5703 -3.9044 -0.8866 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754975055.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:51:21 Heat of formation + Delta-G solvation = -94.145248 kcal Electronic energy + Delta-G solvation = -30879.635345 eV Core-core repulsion = 26842.702350 eV Total energy + Delta-G solvation = -4036.932995 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.29886 -38.67793 -37.94970 -36.58162 -35.20692 -33.43848 -33.19321 -31.69040 -30.93289 -30.24813 -27.35251 -27.11652 -25.91177 -24.28062 -23.29214 -21.89752 -21.24849 -20.17163 -19.67480 -19.22546 -17.41347 -17.02242 -16.44910 -16.09277 -15.72204 -15.62084 -15.35004 -14.74533 -14.56843 -14.29834 -14.11544 -13.97835 -13.83648 -13.67045 -13.48353 -13.07403 -12.83706 -12.63590 -12.41989 -12.26137 -12.11299 -11.75839 -11.67238 -11.48481 -10.99191 -10.87338 -10.78881 -10.76121 -10.67104 -10.58309 -10.34001 -10.11716 -9.83395 -9.56077 -9.41671 -9.28332 -9.13784 -8.87275 -8.39010 -8.11677 -6.60134 -5.71046 -3.16782 2.95955 3.01763 3.57999 3.65775 3.73658 3.78126 3.93522 4.53413 4.68561 4.70736 4.75214 4.78608 5.03799 5.09491 5.25478 5.28548 5.41584 5.49108 5.49896 5.57143 5.66455 5.66942 5.73393 5.78381 5.84837 5.90214 5.92855 6.06100 6.07874 6.14248 6.20273 6.22931 6.29632 6.30071 6.38375 6.57289 6.81566 7.06088 7.12084 7.16237 7.51613 7.54087 7.89994 8.02087 8.25410 8.44089 8.63314 8.84782 9.26205 9.88377 10.43195 11.35595 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.014571 B = 0.004818 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.187302 B = 5810.046130 C = 7121.934204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 C -0.153 4.153 4 C -0.087 4.087 5 C -0.131 4.131 6 H 0.112 0.888 7 C 0.516 3.484 8 N -0.858 5.858 9 O -0.485 6.485 10 C 0.530 3.470 11 O -0.559 6.559 12 N -0.682 5.682 13 C 0.137 3.863 14 C 0.125 3.875 15 H 0.038 0.962 16 C 0.056 3.944 17 O -0.393 6.393 18 C 0.035 3.965 19 C 0.145 3.855 20 N -0.592 5.592 21 C -0.253 4.253 22 H 0.084 0.916 23 C 0.017 3.983 24 N -0.909 5.909 25 Si 0.925 3.075 26 H -0.267 1.267 27 H -0.317 1.317 28 H -0.292 1.292 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.395 0.605 39 H 0.401 0.599 40 H 0.414 0.586 41 H 0.057 0.943 42 H 0.067 0.933 43 H 0.082 0.918 44 H 0.047 0.953 45 H 0.041 0.959 46 H 0.079 0.921 47 H 0.088 0.912 48 H 0.028 0.972 49 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.113 9.858 -0.978 13.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.132 4.132 3 C -0.211 4.211 4 C -0.125 4.125 5 C -0.156 4.156 6 H 0.130 0.870 7 C 0.299 3.701 8 N -0.426 5.426 9 O -0.357 6.357 10 C 0.314 3.686 11 O -0.439 6.439 12 N -0.332 5.332 13 C 0.012 3.988 14 C 0.018 3.982 15 H 0.055 0.945 16 C -0.023 4.023 17 O -0.312 6.312 18 C -0.042 4.042 19 C 0.020 3.980 20 N -0.317 5.317 21 C -0.381 4.381 22 H 0.101 0.899 23 C -0.182 4.182 24 N -0.553 5.553 25 Si 0.758 3.242 26 H -0.194 1.194 27 H -0.246 1.246 28 H -0.218 1.218 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.225 0.775 39 H 0.232 0.768 40 H 0.252 0.748 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.100 0.900 44 H 0.065 0.935 45 H 0.059 0.941 46 H 0.097 0.903 47 H 0.106 0.894 48 H 0.046 0.954 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.188 9.028 -0.014 12.881 hybrid contribution -0.340 -0.368 -1.685 1.758 sum -9.528 8.659 -1.699 12.987 Atomic orbital electron populations 1.21785 0.94832 1.01875 1.01644 1.21449 0.96403 0.96454 0.98939 1.21959 1.01059 0.95942 1.02101 1.21355 0.90634 1.02094 0.98396 1.21615 0.99665 1.00619 0.93658 0.87033 1.20109 0.77539 0.88644 0.83786 1.44038 1.75125 1.15613 1.07782 1.90825 1.41768 1.19618 1.83501 1.19620 0.82771 0.78377 0.87803 1.90634 1.56742 1.53780 1.42717 1.45892 1.07297 1.62328 1.17685 1.21154 0.93736 0.98612 0.85255 1.21401 0.92345 0.93936 0.90545 0.94471 1.22871 0.83093 0.99224 0.97109 1.87786 1.24403 1.59780 1.59195 1.23335 0.99530 0.90192 0.91189 1.21351 0.85076 0.99003 0.92618 1.44203 1.06374 1.50079 1.31077 1.19364 0.90447 1.38690 0.89648 0.89887 1.24995 0.96724 1.00140 0.96342 1.70112 1.22974 1.46924 1.15275 0.85999 0.79250 0.79180 0.79727 1.19363 1.24632 1.21806 0.92573 0.92759 0.92636 0.90201 0.92512 0.92548 0.92286 0.90783 0.89900 0.77508 0.76784 0.74778 0.92446 0.91451 0.89998 0.93503 0.94103 0.90313 0.89412 0.95428 0.94149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.19 37.16 0.34 -0.88 16 2 C -0.11 -1.04 2.48 -90.62 -0.22 -1.26 16 3 C -0.15 -1.17 8.89 37.16 0.33 -0.84 16 4 C -0.09 -1.08 3.49 -26.73 -0.09 -1.17 16 5 C -0.13 -1.89 2.46 -92.92 -0.23 -2.12 16 6 H 0.11 1.30 6.38 -51.93 -0.33 0.96 16 7 C 0.52 8.47 6.93 -10.99 -0.08 8.39 16 8 N -0.86 -10.47 7.64 31.22 0.24 -10.23 16 9 O -0.49 -10.52 10.49 5.55 0.06 -10.47 16 10 C 0.53 9.87 6.55 -10.99 -0.07 9.80 16 11 O -0.56 -11.75 15.88 5.56 0.09 -11.66 16 12 N -0.68 -13.27 3.37 -60.30 -0.20 -13.48 16 13 C 0.14 2.64 4.44 -4.04 -0.02 2.63 16 14 C 0.12 2.53 3.21 -67.43 -0.22 2.32 16 15 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 16 C 0.06 1.03 6.29 37.31 0.23 1.26 16 17 O -0.39 -7.87 10.74 -35.23 -0.38 -8.25 16 18 C 0.04 0.71 6.99 37.31 0.26 0.97 16 19 C 0.15 3.42 5.42 -3.53 -0.02 3.40 16 20 N -0.59 -14.20 3.03 -164.30 -0.50 -14.70 16 21 C -0.25 -6.61 6.61 -15.06 -0.10 -6.71 16 22 H 0.08 2.28 5.07 -52.49 -0.27 2.01 16 23 C 0.02 0.45 4.84 -17.43 -0.08 0.37 16 24 N -0.91 -25.55 11.40 55.49 0.63 -24.92 16 25 Si 0.93 23.60 26.43 -169.99 -4.49 19.11 16 26 H -0.27 -6.47 5.93 56.52 0.34 -6.13 16 27 H -0.32 -8.28 7.11 56.52 0.40 -7.88 16 28 H -0.29 -7.87 7.11 56.52 0.40 -7.47 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.71 5.01 -51.93 -0.26 0.45 16 33 H 0.06 0.42 6.51 -51.93 -0.34 0.08 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 1.07 8.13 -51.93 -0.42 0.65 16 37 H 0.08 1.05 7.89 -51.93 -0.41 0.64 16 38 H 0.40 3.41 6.98 -40.82 -0.29 3.12 16 39 H 0.40 5.02 8.93 -40.82 -0.36 4.66 16 40 H 0.41 8.60 7.19 -40.82 -0.29 8.30 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.07 1.45 7.59 -51.93 -0.39 1.05 16 43 H 0.08 1.26 8.14 -51.92 -0.42 0.84 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.04 0.82 8.14 -51.92 -0.42 0.39 16 46 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 47 H 0.09 2.28 6.40 -51.93 -0.33 1.95 16 48 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 368.99 15.07 5.56 5.56 Total: -1.00 -33.06 368.99 -6.93 -39.99 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: -7.97 Total: 12.87 kcal Atomic # 6 Polarization: 16.13 SS G_CDS: 0.04 Total: 16.16 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: 0.17 Total: -63.32 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -0.23 Total: -30.38 kcal Atomic # 14 Polarization: 23.60 SS G_CDS: -4.49 Total: 19.11 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.06 -6.93 -39.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754975055.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.151 kcal (2) G-P(sol) polarization free energy of solvation -33.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds