Wall clock time and date at job start Fri Apr 10 2020 14:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47150 * 2 1 4 4 C 1.52994 * 109.47227 * 120.00505 * 2 1 3 5 5 C 1.53002 * 109.47493 * 172.63308 * 4 2 1 6 6 H 1.09004 * 109.47096 * 53.30409 * 5 4 2 7 7 C 1.50698 * 109.46796 * 293.30914 * 5 4 2 8 8 N 1.34778 * 120.00103 * 74.12983 * 7 5 4 9 9 O 1.21283 * 120.00131 * 253.85595 * 7 5 4 10 10 C 1.50702 * 109.47358 * 173.31103 * 5 4 2 11 11 O 1.21283 * 119.99982 * 359.97438 * 10 5 4 12 12 N 1.34773 * 119.99782 * 179.97438 * 10 5 4 13 13 C 1.46500 * 119.99748 * 179.97438 * 12 10 5 14 14 C 1.52996 * 109.47051 * 180.02562 * 13 12 10 15 15 H 1.09003 * 109.68365 * 59.99900 * 14 13 12 16 16 C 1.53293 * 109.68411 * 180.51964 * 14 13 12 17 17 O 1.42973 * 109.22049 * 171.98460 * 16 14 13 18 18 C 1.42960 * 114.20044 * 297.47912 * 17 16 14 19 19 C 1.53290 * 109.22481 * 62.56121 * 18 17 16 20 20 N 1.47150 * 109.68098 * 299.48433 * 14 13 12 21 21 C 1.36935 * 120.98405 * 9.76089 * 20 14 13 22 22 H 1.07999 * 119.99631 * 330.65035 * 21 20 14 23 23 C 1.38815 * 119.99894 * 150.64700 * 21 20 14 24 24 N 1.31615 * 120.00469 * 342.85514 * 23 21 20 25 25 Si 1.86802 * 119.99738 * 162.85469 * 23 21 20 26 26 H 1.48491 * 109.47464 * 90.00003 * 25 23 21 27 27 H 1.48502 * 109.47194 * 210.00284 * 25 23 21 28 28 H 1.48506 * 109.47309 * 329.99748 * 25 23 21 29 29 H 1.08992 * 109.47133 * 299.99532 * 1 2 3 30 30 H 1.09003 * 109.47062 * 60.00167 * 1 2 3 31 31 H 1.09005 * 109.47108 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47277 * 240.00421 * 2 1 3 33 33 H 1.08999 * 109.47180 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47169 * 300.00394 * 3 2 1 35 35 H 1.09002 * 109.46687 * 60.00060 * 3 2 1 36 36 H 1.08998 * 109.47397 * 52.62520 * 4 2 1 37 37 H 1.09004 * 109.46876 * 292.62953 * 4 2 1 38 38 H 0.97001 * 120.00110 * 4.24401 * 8 7 5 39 39 H 0.96996 * 120.00300 * 184.23571 * 8 7 5 40 40 H 0.97002 * 119.99965 * 0.02562 * 12 10 5 41 41 H 1.09006 * 109.47419 * 300.00145 * 13 12 10 42 42 H 1.08994 * 109.47419 * 60.00105 * 13 12 10 43 43 H 1.09009 * 109.51466 * 291.94853 * 16 14 13 44 44 H 1.08999 * 109.51294 * 52.10013 * 16 14 13 45 45 H 1.09008 * 109.51387 * 302.63514 * 18 17 16 46 46 H 1.08997 * 109.55609 * 182.51426 * 18 17 16 47 47 H 1.09003 * 109.68173 * 187.97520 * 19 18 17 48 48 H 1.08994 * 109.71210 * 67.43789 * 19 18 17 49 49 H 0.96996 * 120.00298 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5588 -0.8835 1.1601 6 1 4.0175 0.0874 0.9727 7 6 3.8982 -1.8252 0.0336 8 7 3.7904 -1.4130 -1.2450 9 8 4.2731 -2.9525 0.2777 10 6 4.0811 -1.4439 2.4579 11 8 3.3142 -1.6890 3.3649 12 7 5.4005 -1.6727 2.6106 13 6 5.9083 -2.2169 3.8724 14 6 7.4270 -2.3792 3.7833 15 1 7.8894 -1.4101 3.5955 16 6 7.9621 -2.9607 5.0968 17 8 9.3462 -3.2825 4.9398 18 6 9.6069 -4.2833 3.9527 19 6 9.1562 -3.7687 2.5809 20 7 7.7630 -3.3082 2.6927 21 6 6.8076 -3.7315 1.8077 22 1 5.7765 -3.8048 2.1205 23 6 7.1644 -4.0663 0.5087 24 7 8.3209 -3.6702 0.0210 25 14 6.0030 -5.0791 -0.5473 26 1 5.0955 -4.1722 -1.2948 27 1 6.7903 -5.8934 -1.5077 28 1 5.2002 -5.9771 0.3213 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.5730 -1.7038 1.3175 37 1 1.7883 -0.1371 2.1343 38 1 3.5540 -0.4925 -1.4396 39 1 3.9493 -2.0366 -1.9707 40 1 6.0139 -1.4763 1.8852 41 1 5.6632 -1.5353 4.6869 42 1 5.4493 -3.1875 4.0604 43 1 7.8466 -2.2262 5.8940 44 1 7.4054 -3.8632 5.3490 45 1 9.0560 -5.1909 4.2001 46 1 10.6745 -4.5011 3.9271 47 1 9.2193 -4.5732 1.8481 48 1 9.7930 -2.9399 2.2718 49 1 8.5703 -3.9044 -0.8866 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754975055.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:51:18 Heat of formation + Delta-G solvation = -120.168215 kcal Electronic energy + Delta-G solvation = -30880.763786 eV Core-core repulsion = 26842.702350 eV Total energy + Delta-G solvation = -4038.061435 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -41.64871 -40.26384 -39.46182 -37.59344 -36.83600 -35.23294 -34.37791 -33.31479 -32.43299 -31.80014 -28.95873 -27.97084 -27.33010 -25.51644 -25.16065 -23.49041 -22.61678 -21.40842 -21.09342 -20.63314 -18.88098 -18.33162 -18.00631 -17.56419 -17.40797 -17.07448 -16.58739 -16.27408 -16.09331 -15.87393 -15.50854 -15.43689 -15.18460 -15.05439 -14.76271 -14.69077 -14.40051 -14.18775 -13.56441 -13.32566 -13.18688 -13.08568 -12.97916 -12.79412 -12.58892 -12.54974 -12.42587 -12.11380 -12.01530 -11.77885 -11.74751 -11.60169 -11.55219 -11.28157 -10.96392 -10.77892 -10.55175 -10.43294 -10.24175 -9.79034 -8.57492 -7.79417 -5.24209 1.44299 1.55945 1.61059 1.69943 1.75499 2.34735 2.65918 2.72166 3.02502 3.38297 3.49632 3.63650 3.76103 3.94541 4.03730 4.04278 4.16308 4.19019 4.25437 4.34177 4.46359 4.49658 4.59464 4.63946 4.65914 4.74548 4.77096 4.81597 4.92442 4.99664 5.08399 5.10560 5.11717 5.13007 5.29889 5.32688 5.47158 5.54670 5.56979 5.63224 5.86851 5.95741 6.29440 6.43507 6.48044 6.70583 7.21467 7.31628 7.45160 7.87832 8.40297 9.25222 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.014571 B = 0.004818 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.187302 B = 5810.046130 C = 7121.934204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 C -0.153 4.153 4 C -0.080 4.080 5 C -0.121 4.121 6 H 0.146 0.854 7 C 0.515 3.485 8 N -0.836 5.836 9 O -0.545 6.545 10 C 0.524 3.476 11 O -0.587 6.587 12 N -0.686 5.686 13 C 0.142 3.858 14 C 0.126 3.874 15 H 0.039 0.961 16 C 0.058 3.942 17 O -0.395 6.395 18 C 0.047 3.953 19 C 0.150 3.850 20 N -0.607 5.607 21 C -0.231 4.231 22 H 0.070 0.930 23 C -0.016 4.016 24 N -0.930 5.930 25 Si 0.964 3.036 26 H -0.248 1.248 27 H -0.329 1.329 28 H -0.318 1.318 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.047 0.953 37 H 0.081 0.919 38 H 0.415 0.585 39 H 0.403 0.597 40 H 0.408 0.592 41 H 0.084 0.916 42 H 0.041 0.959 43 H 0.121 0.879 44 H 0.045 0.955 45 H 0.041 0.959 46 H 0.106 0.894 47 H 0.058 0.942 48 H 0.009 0.991 49 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.696 12.036 -0.817 15.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.126 4.126 3 C -0.210 4.210 4 C -0.118 4.118 5 C -0.145 4.145 6 H 0.164 0.836 7 C 0.298 3.702 8 N -0.403 5.403 9 O -0.422 6.422 10 C 0.310 3.690 11 O -0.468 6.468 12 N -0.334 5.334 13 C 0.017 3.983 14 C 0.020 3.980 15 H 0.056 0.944 16 C -0.021 4.021 17 O -0.314 6.314 18 C -0.031 4.031 19 C 0.024 3.976 20 N -0.333 5.333 21 C -0.360 4.360 22 H 0.088 0.912 23 C -0.212 4.212 24 N -0.577 5.577 25 Si 0.799 3.201 26 H -0.174 1.174 27 H -0.259 1.259 28 H -0.246 1.246 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.100 0.900 38 H 0.249 0.751 39 H 0.234 0.766 40 H 0.245 0.755 41 H 0.102 0.898 42 H 0.059 0.941 43 H 0.138 0.862 44 H 0.064 0.936 45 H 0.059 0.941 46 H 0.124 0.876 47 H 0.077 0.923 48 H 0.027 0.973 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -9.799 11.274 0.127 14.938 hybrid contribution -0.232 -1.012 -1.667 1.964 sum -10.031 10.262 -1.540 14.432 Atomic orbital electron populations 1.21790 0.94211 1.01516 1.02634 1.21411 0.96907 0.97262 0.96982 1.21968 1.01360 0.94540 1.03107 1.21343 0.89002 1.01163 1.00329 1.21613 1.00959 1.01234 0.90740 0.83611 1.20401 0.76657 0.87990 0.85124 1.43845 1.73252 1.16763 1.06423 1.90773 1.44888 1.22028 1.84460 1.20291 0.82127 0.77636 0.88917 1.90614 1.57135 1.54939 1.44150 1.45928 1.07700 1.62389 1.17432 1.21102 0.92852 0.98023 0.86284 1.21550 0.93025 0.93205 0.90243 0.94364 1.22997 0.82164 1.00116 0.96798 1.87794 1.25310 1.59623 1.58656 1.23189 1.01125 0.89897 0.88847 1.21192 0.84775 0.97374 0.94214 1.44392 1.06138 1.51168 1.31575 1.19227 0.90191 1.36985 0.89610 0.91246 1.25270 0.97372 1.01407 0.97169 1.70191 1.23895 1.48460 1.15109 0.85437 0.78109 0.77970 0.78625 1.17365 1.25909 1.24620 0.92413 0.90964 0.93727 0.89894 0.92009 0.90706 0.92246 0.93427 0.89994 0.75121 0.76560 0.75505 0.89786 0.94053 0.86157 0.93621 0.94083 0.87586 0.92325 0.97339 0.94779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.19 71.98 0.66 -1.47 16 2 C -0.11 -1.69 2.48 -10.80 -0.03 -1.72 16 3 C -0.15 -1.78 8.89 71.98 0.64 -1.14 16 4 C -0.08 -1.90 3.49 30.59 0.11 -1.80 16 5 C -0.12 -3.34 2.46 -12.29 -0.03 -3.37 16 6 H 0.15 2.98 6.38 -2.39 -0.02 2.96 16 7 C 0.51 16.38 6.93 87.66 0.61 16.99 16 8 N -0.84 -18.67 7.64 -173.53 -1.33 -20.00 16 9 O -0.54 -23.74 10.49 -3.04 -0.03 -23.77 16 10 C 0.52 19.33 6.55 87.66 0.57 19.90 16 11 O -0.59 -24.68 15.88 -3.04 -0.05 -24.73 16 12 N -0.69 -26.48 3.37 -463.07 -1.56 -28.04 16 13 C 0.14 5.39 4.44 86.38 0.38 5.77 16 14 C 0.13 4.97 3.21 44.96 0.14 5.12 16 15 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 16 C 0.06 1.98 6.29 72.08 0.45 2.44 16 17 O -0.40 -14.90 10.74 -148.98 -1.60 -16.50 16 18 C 0.05 1.82 6.99 72.08 0.50 2.33 16 19 C 0.15 7.11 5.42 86.35 0.47 7.58 16 20 N -0.61 -29.19 3.03 -673.74 -2.04 -31.23 16 21 C -0.23 -12.24 6.61 84.03 0.56 -11.69 16 22 H 0.07 3.91 5.07 -2.91 -0.01 3.89 16 23 C -0.02 -0.90 4.84 84.86 0.41 -0.49 16 24 N -0.93 -53.28 11.40 21.65 0.25 -53.03 16 25 Si 0.96 49.78 26.43 68.60 1.81 51.59 16 26 H -0.25 -11.91 5.93 99.48 0.59 -11.32 16 27 H -0.33 -17.34 7.11 99.48 0.71 -16.63 16 28 H -0.32 -17.63 7.11 99.48 0.71 -16.92 16 29 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.08 1.25 5.01 -2.39 -0.01 1.24 16 33 H 0.06 0.66 6.51 -2.39 -0.02 0.64 16 34 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.05 1.38 8.13 -2.39 -0.02 1.36 16 37 H 0.08 1.97 7.89 -2.38 -0.02 1.96 16 38 H 0.42 5.86 6.98 -92.71 -0.65 5.21 16 39 H 0.40 9.32 8.93 -92.71 -0.83 8.50 16 40 H 0.41 16.85 7.19 -92.71 -0.67 16.19 16 41 H 0.08 2.74 8.14 -2.38 -0.02 2.72 16 42 H 0.04 1.79 7.59 -2.39 -0.02 1.77 16 43 H 0.12 3.24 8.14 -2.38 -0.02 3.22 16 44 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 46 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 47 H 0.06 3.12 6.40 -2.39 -0.02 3.10 16 48 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 49 H 0.24 13.82 8.31 -92.71 -0.77 13.05 16 Total: -1.00 -73.71 368.99 -0.37 -74.08 By element: Atomic # 1 Polarization: 34.44 SS G_CDS: -1.27 Total: 33.17 kcal Atomic # 6 Polarization: 33.01 SS G_CDS: 5.45 Total: 38.46 kcal Atomic # 7 Polarization: -127.62 SS G_CDS: -4.68 Total: -132.30 kcal Atomic # 8 Polarization: -63.32 SS G_CDS: -1.68 Total: -65.00 kcal Atomic # 14 Polarization: 49.78 SS G_CDS: 1.81 Total: 51.59 kcal Total: -73.71 -0.37 -74.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754975055.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.087 kcal (2) G-P(sol) polarization free energy of solvation -73.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds