Wall clock time and date at job start Fri Apr 10 2020 14:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46912 * 2 1 4 4 C 1.52999 * 109.46780 * 119.99980 * 2 1 3 5 5 C 1.52998 * 109.47061 * 66.22512 * 4 2 1 6 6 H 1.09002 * 109.47473 * 304.19066 * 5 4 2 7 7 C 1.50704 * 109.47254 * 64.19488 * 5 4 2 8 8 N 1.34782 * 119.99611 * 274.88337 * 7 5 4 9 9 O 1.21274 * 120.00264 * 94.60829 * 7 5 4 10 10 C 1.50697 * 109.47204 * 184.19364 * 5 4 2 11 11 O 1.21287 * 119.99820 * 359.97438 * 10 5 4 12 12 N 1.34777 * 120.00487 * 180.02562 * 10 5 4 13 13 C 1.46500 * 120.00278 * 180.02562 * 12 10 5 14 14 C 1.52998 * 109.46995 * 179.97438 * 13 12 10 15 15 H 1.08999 * 109.68074 * 60.09938 * 14 13 12 16 16 C 1.53291 * 109.68127 * 180.61427 * 14 13 12 17 17 O 1.42976 * 109.21814 * 171.98676 * 16 14 13 18 18 C 1.42967 * 114.20141 * 297.47747 * 17 16 14 19 19 C 1.53304 * 109.21975 * 62.55837 * 18 17 16 20 20 N 1.47143 * 108.38761 * 307.70204 * 19 18 17 21 21 C 1.36936 * 120.98043 * 230.51409 * 20 19 18 22 22 H 1.08004 * 120.00306 * 149.17292 * 21 20 19 23 23 C 1.38809 * 120.00223 * 329.16729 * 21 20 19 24 24 N 1.31618 * 120.00479 * 171.02358 * 23 21 20 25 25 Si 1.86802 * 119.99736 * 351.03123 * 23 21 20 26 26 H 1.48495 * 109.47406 * 90.84515 * 25 23 21 27 27 H 1.48507 * 109.47100 * 210.84566 * 25 23 21 28 28 H 1.48503 * 109.46978 * 330.84457 * 25 23 21 29 29 H 1.09013 * 109.47256 * 60.00213 * 1 2 3 30 30 H 1.09000 * 109.47329 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47413 * 300.00239 * 1 2 3 32 32 H 1.08999 * 109.47063 * 240.00053 * 2 1 3 33 33 H 1.08997 * 109.46808 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47439 * 299.99773 * 3 2 1 35 35 H 1.08999 * 109.47213 * 60.00145 * 3 2 1 36 36 H 1.08997 * 109.47179 * 306.22322 * 4 2 1 37 37 H 1.09000 * 109.46743 * 186.22178 * 4 2 1 38 38 H 0.96996 * 119.99481 * 184.68114 * 8 7 5 39 39 H 0.97000 * 119.99652 * 4.68495 * 8 7 5 40 40 H 0.96999 * 119.99312 * 359.97438 * 12 10 5 41 41 H 1.08996 * 109.46850 * 299.99476 * 13 12 10 42 42 H 1.08993 * 109.47075 * 59.99897 * 13 12 10 43 43 H 1.09000 * 109.51607 * 291.94875 * 16 14 13 44 44 H 1.09002 * 109.51278 * 52.10147 * 16 14 13 45 45 H 1.08996 * 109.51167 * 302.64055 * 18 17 16 46 46 H 1.08990 * 109.55492 * 182.50854 * 18 17 16 47 47 H 1.08999 * 109.67965 * 187.97532 * 19 18 17 48 48 H 1.09004 * 109.70410 * 67.44444 * 19 18 17 49 49 H 0.96992 * 120.00248 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6616 -2.2018 1.1735 6 1 0.5837 -2.2951 1.0411 7 6 2.3683 -2.8418 0.0064 8 7 1.8284 -2.7760 -1.2268 9 8 3.4253 -3.4117 0.1759 10 6 2.0725 -2.8912 2.4490 11 8 2.6150 -2.2605 3.3315 12 7 1.8381 -4.2088 2.6086 13 6 2.2371 -4.8788 3.8488 14 6 1.8589 -6.3594 3.7730 15 1 2.3701 -6.8262 2.9311 16 6 2.2605 -7.0622 5.0748 17 8 1.7387 -8.3933 5.0713 18 6 0.3113 -8.4632 5.0321 19 6 -0.1892 -7.8323 3.7276 20 7 0.4031 -6.4910 3.6036 21 6 -0.3774 -5.3977 3.3380 22 1 -0.0945 -4.4270 3.7179 23 6 -1.5322 -5.5367 2.5804 24 7 -2.3733 -4.5302 2.4719 25 14 -1.8924 -7.1524 1.7148 26 1 -2.6935 -8.0256 2.6097 27 1 -2.6559 -6.8871 0.4689 28 1 -0.6142 -7.8289 1.3775 29 1 -0.3634 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.5885 -0.2758 2.1357 37 1 3.1242 -0.6258 1.3067 38 1 2.2474 -3.2450 -1.9652 39 1 1.0209 -2.2596 -1.3757 40 1 1.4046 -4.7132 1.9026 41 1 3.3148 -4.7852 3.9818 42 1 1.7252 -4.4162 4.6926 43 1 3.3473 -7.0967 5.1496 44 1 1.8535 -6.5144 5.9248 45 1 -0.1033 -7.9204 5.8815 46 1 -0.0043 -9.5055 5.0769 47 1 -1.2761 -7.7529 3.7516 48 1 0.1153 -8.4478 2.8811 49 1 -3.1804 -4.6275 1.9428 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754975056.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:51:25 Heat of formation + Delta-G solvation = -99.513451 kcal Electronic energy + Delta-G solvation = -30498.809364 eV Core-core repulsion = 26461.643587 eV Total energy + Delta-G solvation = -4037.165778 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.36789 -39.00662 -38.10894 -36.52033 -35.41200 -33.64989 -33.45606 -31.85945 -31.34004 -30.66042 -27.56623 -27.19974 -25.97051 -24.37027 -23.46144 -22.37493 -21.49846 -20.04922 -19.92074 -19.32424 -17.58504 -16.99958 -16.76554 -16.14133 -16.08802 -15.74512 -15.46785 -15.07451 -14.84419 -14.50652 -14.30776 -14.19665 -14.02393 -13.84517 -13.52935 -13.49946 -12.90555 -12.59570 -12.43633 -12.22163 -12.11124 -12.00051 -11.84826 -11.64061 -11.52950 -11.22418 -10.86586 -10.79834 -10.69020 -10.66509 -10.52703 -10.27554 -9.80848 -9.78128 -9.61211 -9.59279 -9.46110 -9.17528 -8.77446 -8.21022 -7.03875 -6.07423 -3.53762 2.68550 3.06457 3.17721 3.34061 3.35121 3.65175 3.86933 4.28752 4.35817 4.63694 4.79155 4.82579 4.88440 4.99550 5.16451 5.18649 5.42351 5.43935 5.49194 5.57054 5.59750 5.64169 5.71410 5.77570 5.79305 5.88620 5.88835 5.90079 6.00842 6.03832 6.06373 6.11554 6.16390 6.23907 6.31738 6.35265 6.40249 6.48992 6.73970 6.79155 7.15126 7.31051 7.59064 7.77837 8.18875 8.24659 8.29581 8.73592 8.87179 9.53456 9.91223 11.06066 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.014151 B = 0.004434 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.116950 B = 6313.289035 C = 7231.916957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.108 4.108 3 C -0.144 4.144 4 C -0.086 4.086 5 C -0.134 4.134 6 H 0.126 0.874 7 C 0.534 3.466 8 N -0.853 5.853 9 O -0.533 6.533 10 C 0.538 3.462 11 O -0.556 6.556 12 N -0.685 5.685 13 C 0.138 3.862 14 C 0.129 3.871 15 H 0.048 0.952 16 C 0.054 3.946 17 O -0.388 6.388 18 C 0.046 3.954 19 C 0.086 3.914 20 N -0.609 5.609 21 C -0.263 4.263 22 H 0.099 0.901 23 C 0.026 3.974 24 N -0.909 5.909 25 Si 0.887 3.113 26 H -0.290 1.290 27 H -0.306 1.306 28 H -0.265 1.265 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.400 0.600 39 H 0.402 0.598 40 H 0.410 0.590 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.053 0.947 45 H 0.051 0.949 46 H 0.084 0.916 47 H 0.078 0.922 48 H 0.041 0.959 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.052 4.529 -5.843 8.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.127 4.127 3 C -0.201 4.201 4 C -0.124 4.124 5 C -0.158 4.158 6 H 0.144 0.856 7 C 0.318 3.682 8 N -0.418 5.418 9 O -0.409 6.409 10 C 0.322 3.678 11 O -0.435 6.435 12 N -0.335 5.335 13 C 0.014 3.986 14 C 0.023 3.977 15 H 0.065 0.935 16 C -0.025 4.025 17 O -0.306 6.306 18 C -0.032 4.032 19 C -0.039 4.039 20 N -0.336 5.336 21 C -0.392 4.392 22 H 0.117 0.883 23 C -0.174 4.174 24 N -0.552 5.552 25 Si 0.718 3.282 26 H -0.217 1.217 27 H -0.234 1.234 28 H -0.190 1.190 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.105 0.895 37 H 0.092 0.908 38 H 0.231 0.769 39 H 0.232 0.768 40 H 0.247 0.753 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.107 0.893 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.102 0.898 47 H 0.096 0.904 48 H 0.059 0.941 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.070 4.540 -4.972 9.065 hybrid contribution -1.329 -0.971 -1.291 2.092 sum 4.741 3.569 -6.264 8.628 Atomic orbital electron populations 1.21980 0.94647 1.02420 1.02227 1.21346 0.96365 0.96721 0.98264 1.21788 1.00918 0.95632 1.01798 1.21374 1.02237 0.90021 0.98807 1.21627 1.03748 0.97801 0.92610 0.85637 1.20217 0.84968 0.78906 0.84146 1.44003 1.32010 1.55345 1.10476 1.90773 1.21952 1.43327 1.84819 1.19503 0.78452 0.82376 0.87422 1.90631 1.43961 1.65309 1.43613 1.45784 1.59534 1.08562 1.19576 1.21121 0.98332 0.91425 0.87749 1.21440 0.86147 0.93758 0.96376 0.93484 1.22921 0.98260 0.83857 0.97421 1.87829 1.21024 1.26674 1.95073 1.23062 0.81194 1.00415 0.98574 1.22197 0.98488 0.87585 0.95678 1.44421 1.01001 1.03773 1.84360 1.19085 1.04006 0.88868 1.27192 0.88345 1.25319 0.97545 0.96633 0.97873 1.69737 1.11891 1.30781 1.42757 0.87011 0.78089 0.84295 0.78765 1.21742 1.23435 1.19024 0.92638 0.92098 0.91972 0.90995 0.92757 0.92744 0.92401 0.89544 0.90837 0.76912 0.76786 0.75264 0.91971 0.91178 0.89264 0.92906 0.93073 0.89768 0.90377 0.94148 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 8.77 37.16 0.33 -1.24 16 2 C -0.11 -1.13 2.49 -90.62 -0.23 -1.36 16 3 C -0.14 -1.35 9.19 37.16 0.34 -1.00 16 4 C -0.09 -1.19 3.47 -26.73 -0.09 -1.28 16 5 C -0.13 -2.11 2.41 -92.92 -0.22 -2.33 16 6 H 0.13 1.93 6.43 -51.93 -0.33 1.60 16 7 C 0.53 8.12 6.45 -10.98 -0.07 8.05 16 8 N -0.85 -9.12 7.84 31.22 0.24 -8.88 16 9 O -0.53 -10.13 17.09 5.56 0.10 -10.04 16 10 C 0.54 10.65 6.56 -10.99 -0.07 10.58 16 11 O -0.56 -12.25 15.94 5.55 0.09 -12.16 16 12 N -0.68 -13.66 3.63 -60.30 -0.22 -13.87 16 13 C 0.14 2.64 4.45 -4.04 -0.02 2.62 16 14 C 0.13 2.47 3.21 -67.42 -0.22 2.25 16 15 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 16 C 0.05 0.92 6.29 37.31 0.23 1.15 16 17 O -0.39 -7.04 10.74 -35.23 -0.38 -7.42 16 18 C 0.05 0.81 6.99 37.32 0.26 1.07 16 19 C 0.09 1.77 4.30 -3.53 -0.02 1.76 16 20 N -0.61 -13.34 2.83 -164.30 -0.47 -13.81 16 21 C -0.26 -6.52 7.57 -15.06 -0.11 -6.64 16 22 H 0.10 2.66 5.99 -52.48 -0.31 2.34 16 23 C 0.03 0.67 5.41 -17.43 -0.09 0.57 16 24 N -0.91 -25.03 13.97 55.49 0.78 -24.26 16 25 Si 0.89 20.67 24.24 -169.99 -4.12 16.55 16 26 H -0.29 -6.67 6.69 56.52 0.38 -6.30 16 27 H -0.31 -7.33 7.11 56.52 0.40 -6.93 16 28 H -0.27 -6.07 5.76 56.52 0.33 -5.75 16 29 H 0.05 0.47 8.14 -51.92 -0.42 0.04 16 30 H 0.06 0.65 6.20 -51.93 -0.32 0.33 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.70 5.72 -51.93 -0.30 0.40 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.09 1.27 7.98 -51.93 -0.41 0.85 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.40 3.66 8.93 -40.82 -0.36 3.30 16 39 H 0.40 3.43 7.26 -40.82 -0.30 3.14 16 40 H 0.41 8.49 7.18 -40.82 -0.29 8.20 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.07 1.44 7.58 -51.93 -0.39 1.05 16 43 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 47 H 0.08 1.72 4.46 -51.93 -0.23 1.49 16 48 H 0.04 0.85 6.38 -51.93 -0.33 0.52 16 49 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 373.51 15.07 5.63 5.63 Total: -1.00 -31.94 373.51 -6.23 -38.17 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: -7.90 Total: 15.90 kcal Atomic # 6 Polarization: 14.18 SS G_CDS: 0.02 Total: 14.20 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: 0.34 Total: -60.82 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -0.19 Total: -29.62 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.12 Total: 16.55 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.94 -6.23 -38.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754975056.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.340 kcal (2) G-P(sol) polarization free energy of solvation -31.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds