Wall clock time and date at job start Fri Apr 10 2020 14:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46912 * 2 1 4 4 C 1.52999 * 109.46780 * 119.99980 * 2 1 3 5 5 C 1.52998 * 109.47061 * 66.22512 * 4 2 1 6 6 H 1.09002 * 109.47473 * 304.19066 * 5 4 2 7 7 C 1.50704 * 109.47254 * 64.19488 * 5 4 2 8 8 N 1.34782 * 119.99611 * 274.88337 * 7 5 4 9 9 O 1.21274 * 120.00264 * 94.60829 * 7 5 4 10 10 C 1.50697 * 109.47204 * 184.19364 * 5 4 2 11 11 O 1.21287 * 119.99820 * 359.97438 * 10 5 4 12 12 N 1.34777 * 120.00487 * 180.02562 * 10 5 4 13 13 C 1.46500 * 120.00278 * 180.02562 * 12 10 5 14 14 C 1.52998 * 109.46995 * 179.97438 * 13 12 10 15 15 H 1.08999 * 109.68074 * 60.09938 * 14 13 12 16 16 C 1.53291 * 109.68127 * 180.61427 * 14 13 12 17 17 O 1.42976 * 109.21814 * 171.98676 * 16 14 13 18 18 C 1.42967 * 114.20141 * 297.47747 * 17 16 14 19 19 C 1.53304 * 109.21975 * 62.55837 * 18 17 16 20 20 N 1.47143 * 108.38761 * 307.70204 * 19 18 17 21 21 C 1.36936 * 120.98043 * 230.51409 * 20 19 18 22 22 H 1.08004 * 120.00306 * 149.17292 * 21 20 19 23 23 C 1.38809 * 120.00223 * 329.16729 * 21 20 19 24 24 N 1.31618 * 120.00479 * 171.02358 * 23 21 20 25 25 Si 1.86802 * 119.99736 * 351.03123 * 23 21 20 26 26 H 1.48495 * 109.47406 * 90.84515 * 25 23 21 27 27 H 1.48507 * 109.47100 * 210.84566 * 25 23 21 28 28 H 1.48503 * 109.46978 * 330.84457 * 25 23 21 29 29 H 1.09013 * 109.47256 * 60.00213 * 1 2 3 30 30 H 1.09000 * 109.47329 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47413 * 300.00239 * 1 2 3 32 32 H 1.08999 * 109.47063 * 240.00053 * 2 1 3 33 33 H 1.08997 * 109.46808 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47439 * 299.99773 * 3 2 1 35 35 H 1.08999 * 109.47213 * 60.00145 * 3 2 1 36 36 H 1.08997 * 109.47179 * 306.22322 * 4 2 1 37 37 H 1.09000 * 109.46743 * 186.22178 * 4 2 1 38 38 H 0.96996 * 119.99481 * 184.68114 * 8 7 5 39 39 H 0.97000 * 119.99652 * 4.68495 * 8 7 5 40 40 H 0.96999 * 119.99312 * 359.97438 * 12 10 5 41 41 H 1.08996 * 109.46850 * 299.99476 * 13 12 10 42 42 H 1.08993 * 109.47075 * 59.99897 * 13 12 10 43 43 H 1.09000 * 109.51607 * 291.94875 * 16 14 13 44 44 H 1.09002 * 109.51278 * 52.10147 * 16 14 13 45 45 H 1.08996 * 109.51167 * 302.64055 * 18 17 16 46 46 H 1.08990 * 109.55492 * 182.50854 * 18 17 16 47 47 H 1.08999 * 109.67965 * 187.97532 * 19 18 17 48 48 H 1.09004 * 109.70410 * 67.44444 * 19 18 17 49 49 H 0.96992 * 120.00248 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6616 -2.2018 1.1735 6 1 0.5837 -2.2951 1.0411 7 6 2.3683 -2.8418 0.0064 8 7 1.8284 -2.7760 -1.2268 9 8 3.4253 -3.4117 0.1759 10 6 2.0725 -2.8912 2.4490 11 8 2.6150 -2.2605 3.3315 12 7 1.8381 -4.2088 2.6086 13 6 2.2371 -4.8788 3.8488 14 6 1.8589 -6.3594 3.7730 15 1 2.3701 -6.8262 2.9311 16 6 2.2605 -7.0622 5.0748 17 8 1.7387 -8.3933 5.0713 18 6 0.3113 -8.4632 5.0321 19 6 -0.1892 -7.8323 3.7276 20 7 0.4031 -6.4910 3.6036 21 6 -0.3774 -5.3977 3.3380 22 1 -0.0945 -4.4270 3.7179 23 6 -1.5322 -5.5367 2.5804 24 7 -2.3733 -4.5302 2.4719 25 14 -1.8924 -7.1524 1.7148 26 1 -2.6935 -8.0256 2.6097 27 1 -2.6559 -6.8871 0.4689 28 1 -0.6142 -7.8289 1.3775 29 1 -0.3634 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.5885 -0.2758 2.1357 37 1 3.1242 -0.6258 1.3067 38 1 2.2474 -3.2450 -1.9652 39 1 1.0209 -2.2596 -1.3757 40 1 1.4046 -4.7132 1.9026 41 1 3.3148 -4.7852 3.9818 42 1 1.7252 -4.4162 4.6926 43 1 3.3473 -7.0967 5.1496 44 1 1.8535 -6.5144 5.9248 45 1 -0.1033 -7.9204 5.8815 46 1 -0.0043 -9.5055 5.0769 47 1 -1.2761 -7.7529 3.7516 48 1 0.1153 -8.4478 2.8811 49 1 -3.1804 -4.6275 1.9428 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754975056.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:51:23 Heat of formation + Delta-G solvation = -125.040575 kcal Electronic energy + Delta-G solvation = -30499.916304 eV Core-core repulsion = 26461.643587 eV Total energy + Delta-G solvation = -4038.272717 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.73530 -40.50304 -39.59402 -37.60091 -36.97818 -35.35074 -34.56269 -33.63075 -32.87701 -31.96302 -29.25645 -27.99892 -27.38147 -25.61582 -25.22686 -23.88097 -22.80124 -21.60606 -21.15179 -20.62897 -19.04312 -18.34446 -18.24854 -17.73039 -17.55725 -17.16010 -16.75226 -16.71394 -16.18179 -16.04084 -15.66898 -15.57874 -15.32553 -15.21154 -14.91214 -14.77478 -14.40489 -14.31276 -13.85759 -13.52104 -13.47154 -13.20469 -13.11684 -13.01549 -12.90577 -12.58264 -12.34006 -12.29423 -12.01248 -11.79190 -11.64442 -11.60253 -11.45093 -11.35743 -11.11235 -11.05952 -10.84369 -10.66676 -10.54366 -9.87027 -8.84421 -8.07734 -5.51530 1.31069 1.43690 1.44349 1.49411 1.58633 2.21748 2.42728 2.62253 2.86197 3.03245 3.21549 3.58458 3.71210 3.86551 3.90704 3.98693 4.07363 4.12590 4.17464 4.26575 4.27956 4.37471 4.41657 4.43372 4.57623 4.65003 4.68676 4.72780 4.79419 4.89410 4.90690 4.91434 5.04406 5.08244 5.10597 5.17954 5.28748 5.44992 5.51333 5.55728 5.82430 5.88410 6.17520 6.21185 6.28025 6.62171 6.84639 7.19543 7.27643 7.58817 8.00197 9.08441 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.014151 B = 0.004434 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.116950 B = 6313.289035 C = 7231.916957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.100 4.100 3 C -0.143 4.143 4 C -0.081 4.081 5 C -0.129 4.129 6 H 0.129 0.871 7 C 0.537 3.463 8 N -0.827 5.827 9 O -0.574 6.574 10 C 0.527 3.473 11 O -0.585 6.585 12 N -0.688 5.688 13 C 0.141 3.859 14 C 0.131 3.869 15 H 0.049 0.951 16 C 0.058 3.942 17 O -0.390 6.390 18 C 0.052 3.948 19 C 0.080 3.920 20 N -0.621 5.621 21 C -0.239 4.239 22 H 0.070 0.930 23 C -0.020 4.020 24 N -0.948 5.948 25 Si 0.940 3.060 26 H -0.285 1.285 27 H -0.316 1.316 28 H -0.257 1.257 29 H 0.079 0.921 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.084 0.916 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.413 0.587 39 H 0.416 0.584 40 H 0.406 0.594 41 H 0.077 0.923 42 H 0.050 0.950 43 H 0.121 0.879 44 H 0.052 0.948 45 H 0.050 0.950 46 H 0.117 0.883 47 H 0.064 0.936 48 H 0.042 0.958 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.477 3.579 -6.947 9.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.118 4.118 3 C -0.200 4.200 4 C -0.119 4.119 5 C -0.153 4.153 6 H 0.147 0.853 7 C 0.321 3.679 8 N -0.393 5.393 9 O -0.453 6.453 10 C 0.313 3.687 11 O -0.466 6.466 12 N -0.336 5.336 13 C 0.016 3.984 14 C 0.025 3.975 15 H 0.067 0.933 16 C -0.021 4.021 17 O -0.308 6.308 18 C -0.026 4.026 19 C -0.045 4.045 20 N -0.348 5.348 21 C -0.369 4.369 22 H 0.088 0.912 23 C -0.216 4.216 24 N -0.594 5.594 25 Si 0.771 3.229 26 H -0.212 1.212 27 H -0.245 1.245 28 H -0.182 1.182 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.246 0.754 39 H 0.248 0.752 40 H 0.242 0.758 41 H 0.095 0.905 42 H 0.068 0.932 43 H 0.139 0.861 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.134 0.866 47 H 0.082 0.918 48 H 0.060 0.940 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.492 3.567 -6.096 9.593 hybrid contribution -1.429 -0.638 -0.895 1.803 sum 5.063 2.929 -6.991 9.115 Atomic orbital electron populations 1.21982 0.94155 1.02123 1.02957 1.21307 0.96631 0.97239 0.96661 1.21788 1.00868 0.94733 1.02660 1.21363 1.01313 0.89027 1.00222 1.21608 1.03804 0.98641 0.91251 0.85303 1.20033 0.84405 0.78465 0.85026 1.43748 1.31903 1.54391 1.09236 1.90756 1.23687 1.45334 1.85518 1.20211 0.77782 0.82272 0.88477 1.90599 1.45304 1.65786 1.44954 1.45853 1.59350 1.08836 1.19559 1.21114 0.98874 0.91475 0.86888 1.21563 0.84407 0.93737 0.97789 0.93307 1.22989 1.00124 0.83196 0.95749 1.87842 1.21062 1.27032 1.94855 1.23058 0.81025 1.02050 0.96504 1.22254 0.97758 0.86908 0.97559 1.44539 1.02133 1.03628 1.84488 1.18862 1.03660 0.88790 1.25546 0.91230 1.25781 0.97772 0.99059 0.99008 1.69856 1.12580 1.32639 1.44289 0.86146 0.77957 0.81441 0.77325 1.21220 1.24511 1.18199 0.90235 0.92896 0.92962 0.89801 0.92897 0.90718 0.92734 0.90983 0.92196 0.75415 0.75164 0.75765 0.90541 0.93192 0.86079 0.92972 0.93159 0.86552 0.91756 0.94047 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 8.77 71.98 0.63 -2.29 16 2 C -0.10 -1.96 2.49 -10.79 -0.03 -1.99 16 3 C -0.14 -2.45 9.19 71.98 0.66 -1.79 16 4 C -0.08 -2.27 3.47 30.59 0.11 -2.16 16 5 C -0.13 -4.14 2.41 -12.29 -0.03 -4.17 16 6 H 0.13 4.05 6.43 -2.39 -0.02 4.03 16 7 C 0.54 16.11 6.45 87.66 0.57 16.67 16 8 N -0.83 -16.27 7.84 -173.53 -1.36 -17.63 16 9 O -0.57 -21.80 17.09 -3.01 -0.05 -21.85 16 10 C 0.53 21.53 6.56 87.66 0.57 22.10 16 11 O -0.58 -26.76 15.94 -3.05 -0.05 -26.81 16 12 N -0.69 -28.03 3.63 -463.07 -1.68 -29.71 16 13 C 0.14 5.42 4.45 86.38 0.38 5.80 16 14 C 0.13 4.85 3.21 44.96 0.14 5.00 16 15 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 16 C 0.06 1.82 6.29 72.08 0.45 2.28 16 17 O -0.39 -12.99 10.74 -148.98 -1.60 -14.59 16 18 C 0.05 1.69 6.99 72.08 0.50 2.19 16 19 C 0.08 3.16 4.30 86.36 0.37 3.53 16 20 N -0.62 -26.77 2.83 -673.74 -1.91 -28.68 16 21 C -0.24 -11.99 7.57 84.03 0.64 -11.35 16 22 H 0.07 3.89 5.99 -2.91 -0.02 3.87 16 23 C -0.02 -1.07 5.41 84.86 0.46 -0.61 16 24 N -0.95 -53.22 13.97 21.65 0.30 -52.92 16 25 Si 0.94 42.53 24.24 68.60 1.66 44.19 16 26 H -0.28 -12.54 6.69 99.48 0.67 -11.87 16 27 H -0.32 -14.69 7.11 99.48 0.71 -13.99 16 28 H -0.26 -11.17 5.76 99.48 0.57 -10.60 16 29 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.05 1.08 6.20 -2.39 -0.01 1.06 16 31 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.08 1.45 5.72 -2.39 -0.01 1.43 16 33 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.07 2.20 7.98 -2.39 -0.02 2.18 16 37 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.41 6.66 8.93 -92.71 -0.83 5.83 16 39 H 0.42 6.18 7.26 -92.71 -0.67 5.51 16 40 H 0.41 17.09 7.18 -92.71 -0.67 16.43 16 41 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 42 H 0.05 2.12 7.58 -2.39 -0.02 2.10 16 43 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 44 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 47 H 0.06 2.74 4.46 -2.39 -0.01 2.73 16 48 H 0.04 1.65 6.38 -2.39 -0.02 1.63 16 49 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 Total: -1.00 -69.80 373.51 -0.60 -70.40 By element: Atomic # 1 Polarization: 45.74 SS G_CDS: -1.35 Total: 44.39 kcal Atomic # 6 Polarization: 27.79 SS G_CDS: 5.44 Total: 33.22 kcal Atomic # 7 Polarization: -124.30 SS G_CDS: -4.65 Total: -128.95 kcal Atomic # 8 Polarization: -61.55 SS G_CDS: -1.70 Total: -63.25 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 1.66 Total: 44.19 kcal Total: -69.80 -0.60 -70.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754975056.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.641 kcal (2) G-P(sol) polarization free energy of solvation -69.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds