Wall clock time and date at job start Fri Apr 10 2020 14:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47223 * 2 1 4 4 C 1.52999 * 109.46945 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46989 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46662 * 55.00238 * 5 4 3 7 7 C 1.52996 * 109.47336 * 174.99994 * 5 4 3 8 8 N 1.46498 * 109.47059 * 175.00083 * 7 5 4 9 9 C 1.36943 * 119.99752 * 179.72430 * 8 7 5 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47159 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47290 * 120.00044 * 13 11 9 16 16 H 1.48503 * 109.47163 * 240.00049 * 13 11 9 17 17 N 1.46494 * 109.47171 * 295.00630 * 5 4 3 18 18 C 1.34779 * 120.00531 * 84.99693 * 17 5 4 19 19 O 1.21277 * 119.99526 * 0.02562 * 18 17 5 20 20 C 1.50699 * 120.00383 * 179.97438 * 18 17 5 21 21 N 1.46496 * 109.47334 * 179.97438 * 20 18 17 22 22 C 1.46089 * 118.73077 * 269.73393 * 21 20 18 23 23 C 1.53215 * 109.82388 * 161.46463 * 22 21 20 24 24 O 1.43240 * 108.50965 * 49.54065 * 23 22 21 25 25 C 1.42967 * 112.99004 * 291.45791 * 24 23 22 26 26 C 1.33877 * 118.72772 * 90.00111 * 21 20 18 27 27 O 1.21279 * 118.83102 * 1.88303 * 26 21 20 28 28 H 1.08995 * 109.47660 * 59.99809 * 1 2 3 29 29 H 1.09004 * 109.47196 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.47267 * 299.99850 * 1 2 3 31 31 H 1.09001 * 109.47387 * 239.99934 * 2 1 3 32 32 H 1.09002 * 109.47480 * 119.99855 * 2 1 3 33 33 H 1.08997 * 109.46805 * 60.00149 * 3 2 1 34 34 H 1.08995 * 109.46632 * 299.99912 * 3 2 1 35 35 H 1.08997 * 109.47199 * 60.00449 * 4 3 2 36 36 H 1.08995 * 109.47432 * 299.99480 * 4 3 2 37 37 H 1.09004 * 109.47066 * 55.00351 * 7 5 4 38 38 H 1.08994 * 109.46974 * 295.00498 * 7 5 4 39 39 H 0.97001 * 120.00384 * 0.02562 * 8 7 5 40 40 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 41 41 H 0.97009 * 119.99912 * 264.99313 * 17 5 4 42 42 H 1.09001 * 109.46793 * 300.00372 * 20 18 17 43 43 H 1.09005 * 109.46880 * 59.99506 * 20 18 17 44 44 H 1.08995 * 109.39469 * 281.78410 * 22 21 20 45 45 H 1.09007 * 109.39152 * 41.50074 * 22 21 20 46 46 H 1.09000 * 109.82864 * 289.74932 * 23 22 21 47 47 H 1.08999 * 109.66763 * 169.23937 * 23 22 21 48 48 H 1.08995 * 109.41041 * 289.49217 * 25 24 23 49 49 H 1.09003 * 109.35560 * 169.67122 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6450 3.4245 0.8414 7 6 5.6048 2.8869 0.1264 8 7 6.1030 4.2593 0.0060 9 6 7.4464 4.5101 0.0937 10 1 8.1389 3.6957 0.2472 11 6 7.9180 5.8112 -0.0145 12 7 7.0739 6.8038 -0.2010 13 14 9.7505 6.1533 0.1044 14 1 10.4799 4.8767 0.3129 15 1 10.2179 6.7901 -1.1531 16 1 10.0107 7.0650 1.2474 17 7 3.6929 3.5393 -1.2522 18 6 2.4756 4.1061 -1.3682 19 8 1.7009 4.0749 -0.4357 20 6 2.0776 4.7797 -2.6562 21 7 0.7186 5.3118 -2.5295 22 6 -0.4069 4.4605 -2.9073 23 6 -1.6985 5.0001 -2.2844 24 8 -1.7881 6.4017 -2.5658 25 6 -0.8018 7.1738 -1.8764 26 6 0.5564 6.5612 -2.0769 27 8 1.5400 7.2226 -1.8200 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.9337 0.9286 -0.8891 36 1 3.9329 0.9289 0.8908 37 1 6.0357 2.2733 -0.6648 38 1 5.8894 2.4808 1.0970 39 1 5.4810 4.9908 -0.1315 40 1 7.4035 7.7129 -0.2771 41 1 4.3127 3.5646 -1.9981 42 1 2.7692 5.5950 -2.8686 43 1 2.1094 4.0551 -3.4700 44 1 -0.5024 4.4475 -3.9930 45 1 -0.2301 3.4464 -2.5487 46 1 -1.6822 4.8439 -1.2058 47 1 -2.5569 4.4849 -2.7156 48 1 -1.0366 7.1942 -0.8122 49 1 -0.8017 8.1914 -2.2670 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755357371.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:50:17 Heat of formation + Delta-G solvation = -107.262113 kcal Electronic energy + Delta-G solvation = -29578.087215 eV Core-core repulsion = 25540.585430 eV Total energy + Delta-G solvation = -4037.501785 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 327.199 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.89278 -39.48721 -37.76749 -36.63795 -35.23979 -34.94004 -33.49656 -31.54478 -30.54669 -30.29393 -29.05043 -27.28772 -25.95448 -24.19470 -24.03490 -22.28864 -21.15977 -20.78421 -20.09648 -19.16044 -17.84734 -17.48407 -17.09993 -16.92347 -16.13503 -15.89511 -15.57364 -15.29596 -14.81282 -14.67964 -14.44906 -14.29549 -13.86252 -13.68578 -13.45278 -13.29737 -13.21846 -13.18359 -12.76014 -12.73444 -12.11017 -12.04681 -11.92133 -11.81821 -11.51509 -11.34378 -11.09354 -10.94179 -10.86183 -10.80578 -10.70857 -10.37586 -10.34387 -9.98253 -9.85502 -9.71757 -9.51941 -8.91704 -8.75705 -8.61130 -6.94250 -5.74734 -3.05867 2.40670 2.66217 2.91197 3.43425 3.45484 3.48782 3.51667 3.63296 4.16081 4.51615 4.56658 4.74168 4.82044 4.88752 4.96601 5.00026 5.03158 5.14205 5.15785 5.18756 5.34437 5.37146 5.42115 5.44464 5.50075 5.54399 5.57140 5.78929 5.82609 5.91387 5.93824 5.99601 6.06372 6.13209 6.16556 6.30901 6.41061 6.47958 6.51239 6.58345 6.70326 6.96163 7.21986 7.69931 7.84257 8.02641 8.41931 8.53603 9.53721 10.09788 10.44809 11.46953 Molecular weight = 327.20amu Principal moments of inertia in cm(-1) A = 0.009947 B = 0.003933 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2814.185101 B = 7117.526277 C = 9590.240179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C -0.109 4.109 4 C -0.126 4.126 5 C 0.139 3.861 6 H 0.085 0.915 7 C 0.145 3.855 8 N -0.731 5.731 9 C -0.246 4.246 10 H 0.071 0.929 11 C -0.011 4.011 12 N -0.926 5.926 13 Si 0.906 3.094 14 H -0.281 1.281 15 H -0.291 1.291 16 H -0.291 1.291 17 N -0.707 5.707 18 C 0.502 3.498 19 O -0.537 6.537 20 C 0.088 3.912 21 N -0.587 5.587 22 C 0.086 3.914 23 C 0.045 3.955 24 O -0.373 6.373 25 C 0.053 3.947 26 C 0.489 3.511 27 O -0.525 6.525 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.023 0.977 38 H 0.032 0.968 39 H 0.387 0.613 40 H 0.255 0.745 41 H 0.404 0.596 42 H 0.120 0.880 43 H 0.104 0.896 44 H 0.075 0.925 45 H 0.085 0.915 46 H 0.068 0.932 47 H 0.114 0.886 48 H 0.092 0.908 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.432 -10.663 -6.901 23.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C -0.147 4.147 4 C -0.165 4.165 5 C 0.035 3.965 6 H 0.103 0.897 7 C 0.017 3.983 8 N -0.376 5.376 9 C -0.377 4.377 10 H 0.088 0.912 11 C -0.207 4.207 12 N -0.574 5.574 13 Si 0.737 3.263 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.219 1.219 17 N -0.358 5.358 18 C 0.286 3.714 19 O -0.414 6.414 20 C -0.039 4.039 21 N -0.321 5.321 22 C -0.038 4.038 23 C -0.033 4.033 24 O -0.291 6.291 25 C -0.026 4.026 26 C 0.276 3.724 27 O -0.400 6.400 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.041 0.959 38 H 0.049 0.951 39 H 0.221 0.779 40 H 0.065 0.935 41 H 0.238 0.762 42 H 0.138 0.862 43 H 0.122 0.878 44 H 0.093 0.907 45 H 0.103 0.897 46 H 0.086 0.914 47 H 0.132 0.868 48 H 0.110 0.890 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -19.448 -10.254 -6.190 22.840 hybrid contribution 1.452 0.271 -0.102 1.480 sum -17.996 -9.983 -6.292 21.520 Atomic orbital electron populations 1.21732 0.96280 1.00857 1.01698 1.21584 0.95576 0.97789 1.01407 1.21642 0.94872 0.95165 1.02993 1.21971 0.95993 0.96394 1.02142 1.21277 0.96048 0.92262 0.86949 0.89678 1.20950 0.89249 0.89450 0.98678 1.42373 1.05497 1.02006 1.87773 1.19236 0.83657 0.92443 1.42364 0.91151 1.24773 0.97632 0.95687 1.02632 1.69694 1.32759 0.98998 1.55976 0.86138 0.85159 0.77745 0.77228 1.20583 1.21860 1.21858 1.45916 1.15819 1.56976 1.17136 1.20842 0.82235 0.78252 0.90056 1.90658 1.51686 1.58838 1.40256 1.21388 0.85556 1.00790 0.96152 1.46974 1.06223 1.13535 1.65347 1.22162 0.85949 0.95338 1.00318 1.23023 0.97244 0.82012 1.00974 1.88157 1.53648 1.18047 1.69275 1.22830 0.83498 0.96762 0.99530 1.20962 0.92772 0.81659 0.76978 1.90847 1.39995 1.60104 1.49068 0.93098 0.93295 0.92850 0.92603 0.92415 0.91670 0.92002 0.91986 0.91205 0.95881 0.95072 0.77894 0.93456 0.76183 0.86179 0.87774 0.90688 0.89657 0.91378 0.86842 0.89032 0.85195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 37.15 0.37 -1.01 16 2 C -0.13 -1.30 5.93 -26.73 -0.16 -1.46 16 3 C -0.11 -1.38 3.82 -26.73 -0.10 -1.48 16 4 C -0.13 -1.65 4.89 -26.73 -0.13 -1.78 16 5 C 0.14 2.30 2.41 -67.93 -0.16 2.13 16 6 H 0.09 1.65 7.58 -51.93 -0.39 1.25 16 7 C 0.14 2.81 5.82 -4.04 -0.02 2.79 16 8 N -0.73 -18.38 5.43 -59.91 -0.33 -18.71 16 9 C -0.25 -6.87 9.99 -15.06 -0.15 -7.02 16 10 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 11 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 12 N -0.93 -28.65 13.06 55.49 0.72 -27.92 16 13 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 16 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 17 N -0.71 -10.92 4.47 -53.81 -0.24 -11.16 16 18 C 0.50 7.83 6.46 -10.99 -0.07 7.76 16 19 O -0.54 -9.64 13.57 5.56 0.08 -9.57 16 20 C 0.09 1.13 5.79 -5.20 -0.03 1.10 16 21 N -0.59 -7.40 2.32 -175.67 -0.41 -7.81 16 22 C 0.09 0.73 6.63 -4.15 -0.03 0.71 16 23 C 0.04 0.35 6.91 37.27 0.26 0.61 16 24 O -0.37 -3.76 10.85 -35.23 -0.38 -4.15 16 25 C 0.05 0.59 6.98 35.83 0.25 0.84 16 26 C 0.49 7.29 7.58 -11.56 -0.09 7.20 16 27 O -0.52 -10.36 16.36 5.56 0.09 -10.26 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.52 8.14 -51.92 -0.42 0.09 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.96 7.85 -51.93 -0.41 0.55 16 34 H 0.06 0.83 5.64 -51.93 -0.29 0.53 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.39 10.55 7.33 -40.82 -0.30 10.25 16 40 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 41 H 0.40 5.91 8.60 -40.82 -0.35 5.56 16 42 H 0.12 1.80 7.24 -51.93 -0.38 1.43 16 43 H 0.10 0.93 8.04 -51.93 -0.42 0.51 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.09 0.67 8.13 -51.93 -0.42 0.25 16 46 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 47 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.13 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 396.05 15.07 5.97 5.97 Total: -1.00 -35.87 396.05 -8.11 -43.98 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -8.42 Total: 12.10 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: -0.17 Total: 9.98 kcal Atomic # 7 Polarization: -65.35 SS G_CDS: -0.25 Total: -65.60 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.22 Total: -23.98 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.87 -8.11 -43.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755357371.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.285 kcal (2) G-P(sol) polarization free energy of solvation -35.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds