Wall clock time and date at job start Fri Apr 10 2020 14:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46759 * 124.34973 * 2 1 4 4 C 1.54480 * 105.47243 * 197.03629 * 3 2 1 5 5 C 1.54626 * 101.76586 * 334.58027 * 4 3 2 6 6 H 1.09001 * 110.59821 * 143.52788 * 5 4 3 7 7 N 1.46495 * 110.48824 * 266.12248 * 5 4 3 8 8 C 1.34783 * 120.00214 * 201.22473 * 7 5 4 9 9 O 1.21724 * 119.99509 * 0.02562 * 8 7 5 10 10 C 1.46246 * 120.00301 * 179.97438 * 8 7 5 11 11 C 1.35022 * 120.00259 * 186.79051 * 10 8 7 12 12 C 1.46965 * 119.99982 * 11.38178 * 11 10 8 13 13 C 1.40023 * 120.09899 * 43.45633 * 12 11 10 14 14 C 1.37597 * 119.89890 * 179.97438 * 13 12 11 15 15 C 1.39177 * 120.10233 * 0.25931 * 14 13 12 16 16 O 1.35564 * 119.90264 * 179.74639 * 15 14 13 17 17 C 1.34782 * 116.99766 * 5.78276 * 16 15 14 18 18 H 1.07997 * 120.00164 * 5.30086 * 17 16 15 19 19 C 1.38720 * 120.00107 * 185.29271 * 17 16 15 20 20 N 1.31509 * 120.00330 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 119.99903 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.46804 * 89.99543 * 21 19 17 23 23 H 1.48495 * 109.47407 * 209.99574 * 21 19 17 24 24 H 1.48499 * 109.47157 * 330.00186 * 21 19 17 25 25 C 1.39180 * 120.19924 * 359.48365 * 15 14 13 26 26 C 1.37594 * 120.10059 * 0.51719 * 25 15 14 27 27 C 1.34416 * 124.34608 * 180.02562 * 2 1 3 28 28 O 1.21277 * 124.94516 * 359.60909 * 27 2 1 29 29 H 1.09005 * 109.47341 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47356 * 300.00384 * 1 2 3 31 31 H 1.09002 * 109.46880 * 59.99892 * 1 2 3 32 32 H 1.09005 * 110.24765 * 316.03347 * 3 2 1 33 33 H 1.09001 * 110.25067 * 78.03542 * 3 2 1 34 34 H 1.09005 * 110.96777 * 216.46894 * 4 3 2 35 35 H 1.08999 * 110.97106 * 92.70184 * 4 3 2 36 36 H 0.97000 * 120.00578 * 21.23030 * 7 5 4 37 37 H 1.08001 * 120.00390 * 6.78758 * 10 8 7 38 38 H 1.08004 * 120.00573 * 191.38187 * 11 10 8 39 39 H 1.08000 * 120.05279 * 0.02562 * 13 12 11 40 40 H 1.08006 * 119.94943 * 179.97438 * 14 13 12 41 41 H 0.97003 * 120.00192 * 179.97438 * 20 19 17 42 42 H 1.08000 * 119.94682 * 180.25489 * 25 15 14 43 43 H 1.08007 * 120.05296 * 179.76392 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7009 0.7487 -0.4362 5 6 3.6898 -0.7378 -0.0108 6 1 4.2328 -1.3474 -0.7331 7 7 4.2676 -0.8928 1.3264 8 6 4.7475 -2.0897 1.7187 9 8 4.7012 -3.0417 0.9615 10 6 5.3248 -2.2443 3.0534 11 6 5.9285 -3.4019 3.3980 12 6 6.2296 -4.4080 2.3699 13 6 6.7685 -4.0146 1.1388 14 6 7.0493 -4.9601 0.1794 15 6 6.7934 -6.3052 0.4291 16 8 7.0668 -7.2327 -0.5210 17 6 7.6938 -6.8024 -1.6338 18 1 8.0315 -5.7788 -1.7018 19 6 7.9056 -7.6743 -2.6917 20 7 8.5170 -7.2543 -3.7777 21 14 7.3212 -9.4447 -2.5744 22 1 5.9340 -9.5435 -3.0951 23 1 8.2152 -10.3155 -3.3791 24 1 7.3497 -9.8823 -1.1556 25 6 6.2628 -6.7014 1.6532 26 6 5.9789 -5.7630 2.6185 27 6 2.2234 -1.1098 -0.0005 28 8 1.7945 -2.2442 0.0058 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8982 1.9384 -0.7100 33 1 2.3309 1.6428 1.0004 34 1 4.4754 1.3009 0.0961 35 1 3.8264 0.8449 -1.5146 36 1 4.3048 -0.1342 1.9297 37 1 5.2683 -1.4326 3.7636 38 1 6.1903 -3.5885 4.4291 39 1 6.9642 -2.9707 0.9430 40 1 7.4646 -4.6575 -0.7706 41 1 8.6654 -7.8641 -4.5174 42 1 6.0697 -7.7468 1.8441 43 1 5.5636 -6.0710 3.5668 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255916035.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:55 Heat of formation + Delta-G solvation = -55.255026 kcal Electronic energy + Delta-G solvation = -27663.979541 eV Core-core repulsion = 23675.178637 eV Total energy + Delta-G solvation = -3988.800904 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.88498 -40.98966 -40.19999 -38.29433 -37.64380 -35.66767 -34.66199 -34.10874 -32.52081 -31.81350 -29.93457 -28.29316 -27.58971 -27.09690 -24.68918 -23.56256 -22.83269 -22.43690 -20.66103 -20.46428 -19.87868 -19.22707 -18.25081 -18.01406 -17.54594 -16.85188 -16.58037 -16.31776 -15.99021 -15.87758 -15.67616 -15.29079 -15.25103 -14.82718 -14.67322 -14.61041 -14.44650 -14.12793 -14.05705 -13.93048 -13.72639 -13.56977 -13.22562 -13.10534 -12.67959 -12.50029 -12.37688 -12.34267 -12.30705 -11.95695 -11.49698 -11.36190 -11.05728 -10.73724 -10.45426 -10.04079 -9.76552 -9.58556 -8.63215 -8.54231 -6.24938 -0.04852 0.68134 1.07926 1.26180 1.26380 1.33681 1.48442 1.94858 2.25228 2.43754 2.47545 2.77595 3.09569 3.16707 3.34850 3.38419 3.85454 3.96767 4.02971 4.09764 4.14205 4.18084 4.32847 4.48336 4.53468 4.60944 4.63276 4.69922 4.72050 4.81453 4.92665 4.97160 5.03171 5.16116 5.24756 5.31289 5.40538 5.48881 5.52611 5.63154 5.75657 5.83261 5.89168 5.99153 6.26392 6.63834 6.79744 7.06292 7.41944 7.55186 8.57872 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.013206 B = 0.003102 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.696794 B = 9023.886351 C =10092.767102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.620 5.620 3 C 0.100 3.900 4 C -0.125 4.125 5 C 0.112 3.888 6 H 0.081 0.919 7 N -0.697 5.697 8 C 0.519 3.481 9 O -0.557 6.557 10 C -0.228 4.228 11 C 0.005 3.995 12 C -0.156 4.156 13 C 0.009 3.991 14 C -0.252 4.252 15 C 0.131 3.869 16 O -0.243 6.243 17 C -0.401 4.401 18 H 0.076 0.924 19 C 0.010 3.990 20 N -0.922 5.922 21 Si 0.972 3.028 22 H -0.270 1.270 23 H -0.259 1.259 24 H -0.261 1.261 25 C -0.212 4.212 26 C -0.049 4.049 27 C 0.487 3.513 28 O -0.578 6.578 29 H 0.050 0.950 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.111 0.889 33 H 0.102 0.898 34 H 0.134 0.866 35 H 0.104 0.896 36 H 0.423 0.577 37 H 0.181 0.819 38 H 0.177 0.823 39 H 0.111 0.889 40 H 0.098 0.902 41 H 0.286 0.714 42 H 0.128 0.872 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.968 24.999 16.229 32.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.354 5.354 3 C -0.021 4.021 4 C -0.162 4.162 5 C 0.003 3.997 6 H 0.099 0.901 7 N -0.353 5.353 8 C 0.310 3.690 9 O -0.435 6.435 10 C -0.248 4.248 11 C -0.014 4.014 12 C -0.156 4.156 13 C -0.009 4.009 14 C -0.271 4.271 15 C 0.081 3.919 16 O -0.150 6.150 17 C -0.477 4.477 18 H 0.093 0.907 19 C -0.188 4.188 20 N -0.562 5.562 21 Si 0.794 3.206 22 H -0.196 1.196 23 H -0.184 1.184 24 H -0.185 1.185 25 C -0.231 4.231 26 C -0.067 4.067 27 C 0.273 3.727 28 O -0.456 6.456 29 H 0.069 0.931 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.129 0.871 33 H 0.120 0.880 34 H 0.152 0.848 35 H 0.123 0.877 36 H 0.262 0.738 37 H 0.199 0.801 38 H 0.194 0.806 39 H 0.129 0.871 40 H 0.116 0.884 41 H 0.096 0.904 42 H 0.146 0.854 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -12.293 23.492 15.464 30.694 hybrid contribution -0.162 -0.575 -0.939 1.113 sum -12.455 22.917 14.525 29.855 Atomic orbital electron populations 1.21718 0.77203 1.02654 1.03793 1.48398 1.07385 1.07592 1.72034 1.22483 0.89036 0.86023 1.04607 1.23007 0.98678 0.89926 1.04625 1.21489 0.89847 1.01015 0.87397 0.90130 1.45545 1.61768 1.12637 1.15398 1.19387 0.78246 0.82485 0.88870 1.91059 1.56655 1.39739 1.56073 1.23060 1.05319 1.01009 0.95431 1.22655 0.90086 0.90080 0.98566 1.18984 1.06971 0.94130 0.95554 1.20756 0.92024 0.96810 0.91320 1.21033 1.11354 0.93412 1.01307 1.19832 0.93811 0.88593 0.89635 1.83451 1.69782 1.35176 1.26595 1.20714 1.35278 0.99225 0.92520 0.90675 1.25321 0.96182 1.04255 0.93064 1.69707 1.42188 1.38509 1.05820 0.85209 0.78599 0.77546 0.79268 1.19558 1.18361 1.18542 1.20370 1.09567 1.01043 0.92117 1.21197 0.95865 0.91119 0.98508 1.21920 0.91128 0.84449 0.75199 1.90741 1.79479 1.24077 1.51334 0.93090 0.89397 0.89683 0.87109 0.87965 0.84766 0.87738 0.73784 0.80134 0.80601 0.87061 0.88419 0.90438 0.85390 0.82140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.21 11.14 127.77 1.42 2.64 16 2 N -0.62 -10.60 3.33 -842.89 -2.81 -13.40 16 3 C 0.10 0.60 7.35 86.83 0.64 1.24 16 4 C -0.12 -1.03 6.77 31.65 0.21 -0.81 16 5 C 0.11 2.49 3.23 44.99 0.15 2.64 16 6 H 0.08 2.49 7.66 -2.39 -0.02 2.48 16 7 N -0.70 -13.39 5.12 -446.94 -2.29 -15.67 16 8 C 0.52 14.75 6.76 86.32 0.58 15.33 16 9 O -0.56 -23.54 11.88 -4.42 -0.05 -23.59 16 10 C -0.23 -4.47 9.90 23.61 0.23 -4.24 16 11 C 0.01 0.12 9.80 23.82 0.23 0.35 16 12 C -0.16 -5.46 4.54 -20.13 -0.09 -5.55 16 13 C 0.01 0.39 6.59 22.55 0.15 0.54 16 14 C -0.25 -13.11 9.11 22.34 0.20 -12.91 16 15 C 0.13 7.05 6.66 22.72 0.15 7.20 16 16 O -0.24 -14.70 8.57 -20.21 -0.17 -14.88 16 17 C -0.40 -25.90 9.90 67.94 0.67 -25.23 16 18 H 0.08 5.12 5.50 -2.91 -0.02 5.11 16 19 C 0.01 0.63 5.49 84.86 0.47 1.10 16 20 N -0.92 -58.25 13.96 21.62 0.30 -57.95 16 21 Si 0.97 48.88 28.62 68.60 1.96 50.84 16 22 H -0.27 -13.30 7.11 99.48 0.71 -12.59 16 23 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.26 -13.07 7.11 99.48 0.71 -12.37 16 25 C -0.21 -9.40 9.97 22.34 0.22 -9.18 16 26 C -0.05 -1.75 9.78 22.55 0.22 -1.53 16 27 C 0.49 13.92 7.65 87.90 0.67 14.59 16 28 O -0.58 -24.54 17.35 -3.02 -0.05 -24.59 16 29 H 0.05 1.05 7.53 -2.38 -0.02 1.03 16 30 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.11 0.15 8.14 -2.38 -0.02 0.13 16 33 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 34 H 0.13 0.24 8.03 -2.38 -0.02 0.22 16 35 H 0.10 0.80 8.14 -2.39 -0.02 0.79 16 36 H 0.42 3.69 8.55 -92.71 -0.79 2.90 16 37 H 0.18 1.52 8.06 -2.91 -0.02 1.50 16 38 H 0.18 2.30 8.06 -2.91 -0.02 2.28 16 39 H 0.11 4.29 7.01 -2.91 -0.02 4.27 16 40 H 0.10 5.58 5.69 -2.91 -0.02 5.57 16 41 H 0.29 16.46 8.31 -92.71 -0.77 15.69 16 42 H 0.13 5.22 8.06 -2.91 -0.02 5.19 16 43 H 0.16 4.17 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -99.66 366.05 3.29 -96.37 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.26 Total: 16.71 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: 6.14 Total: -13.84 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -4.80 Total: -87.03 kcal Atomic # 8 Polarization: -62.78 SS G_CDS: -0.28 Total: -63.06 kcal Atomic # 14 Polarization: 48.88 SS G_CDS: 1.96 Total: 50.84 kcal Total: -99.66 3.29 -96.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255916035.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.118 kcal (2) G-P(sol) polarization free energy of solvation -99.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds