Wall clock time and date at job start Fri Apr 10 2020 14:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46756 * 124.35031 * 2 1 4 4 C 1.54485 * 105.47222 * 197.03512 * 3 2 1 5 5 H 1.08998 * 111.00053 * 92.71814 * 4 3 2 6 6 N 1.46498 * 110.96619 * 216.46079 * 4 3 2 7 7 C 1.34776 * 119.99894 * 198.83111 * 6 4 3 8 8 O 1.21721 * 119.99983 * 0.02562 * 7 6 4 9 9 C 1.46257 * 120.00421 * 180.02562 * 7 6 4 10 10 C 1.35013 * 120.00231 * 173.17331 * 9 7 6 11 11 C 1.46965 * 120.00356 * 346.87718 * 10 9 7 12 12 C 1.40027 * 120.09841 * 315.16244 * 11 10 9 13 13 C 1.37596 * 119.89861 * 180.31824 * 12 11 10 14 14 C 1.39173 * 120.09980 * 359.93079 * 13 12 11 15 15 O 1.35567 * 119.89584 * 180.02562 * 14 13 12 16 16 C 1.34792 * 117.00113 * 187.30283 * 15 14 13 17 17 H 1.07996 * 119.99464 * 6.25721 * 16 15 14 18 18 C 1.38712 * 119.99967 * 186.25464 * 16 15 14 19 19 N 1.31508 * 120.00404 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99633 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47268 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47377 * 120.00062 * 20 18 16 23 23 H 1.48501 * 109.47239 * 240.00050 * 20 18 16 24 24 C 1.39175 * 120.20577 * 0.04972 * 14 13 12 25 25 C 1.37603 * 120.10206 * 359.97438 * 24 14 13 26 26 C 1.54626 * 101.76320 * 334.58190 * 4 3 2 27 27 C 1.34423 * 124.34575 * 180.02562 * 2 1 3 28 28 O 1.21276 * 124.94495 * 359.54392 * 27 2 1 29 29 H 1.08999 * 109.47468 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47454 * 299.95862 * 1 2 3 31 31 H 1.09005 * 109.46934 * 59.95225 * 1 2 3 32 32 H 1.08994 * 110.24962 * 78.03144 * 3 2 1 33 33 H 1.09001 * 110.24555 * 316.03136 * 3 2 1 34 34 H 0.97000 * 120.00611 * 18.83991 * 6 4 3 35 35 H 1.08003 * 119.99871 * 353.17149 * 9 7 6 36 36 H 1.08000 * 120.00051 * 166.88276 * 10 9 7 37 37 H 1.08006 * 120.05099 * 0.25165 * 12 11 10 38 38 H 1.08001 * 119.95072 * 179.97438 * 13 12 11 39 39 H 0.97000 * 119.99896 * 180.02562 * 19 18 16 40 40 H 1.07995 * 119.95076 * 179.97438 * 24 14 13 41 41 H 1.07999 * 120.05511 * 179.97438 * 25 24 14 42 42 H 1.09002 * 110.48253 * 143.48108 * 26 4 3 43 43 H 1.09000 * 110.48609 * 266.11562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2930 1.2116 0.0000 4 6 3.7009 0.7486 -0.4362 5 1 3.8271 0.8449 -1.5145 6 7 4.7418 1.4909 0.2791 7 6 5.9993 1.5238 -0.2048 8 8 6.2699 0.9371 -1.2364 9 6 7.0387 2.2643 0.5095 10 6 8.3239 2.1853 0.1035 11 6 8.7288 1.1493 -0.8570 12 6 8.2861 -0.1693 -0.6958 13 6 8.6730 -1.1374 -1.5938 14 6 9.5020 -0.8073 -2.6619 15 8 9.8803 -1.7643 -3.5445 16 6 10.8010 -1.4175 -4.4658 17 1 11.2766 -0.4492 -4.4159 18 6 11.1376 -2.3043 -5.4779 19 7 10.5581 -3.4833 -5.5389 20 14 12.4142 -1.8239 -6.7543 21 1 12.9120 -0.4550 -6.4656 22 1 13.5468 -2.7833 -6.7071 23 1 11.7981 -1.8514 -8.1052 24 6 9.9443 0.5020 -2.8264 25 6 9.5629 1.4767 -1.9330 26 6 3.6897 -0.7379 -0.0108 27 6 2.2234 -1.1099 -0.0005 28 8 1.7945 -2.2442 0.0069 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5132 0.8904 31 1 -0.3633 0.5146 -0.8896 32 1 2.3308 1.6427 1.0003 33 1 1.8982 1.9383 -0.7100 34 1 4.5261 1.9587 1.1010 35 1 6.7782 2.8745 1.3617 36 1 9.0545 2.8834 0.4846 37 1 7.6426 -0.4263 0.1327 38 1 8.3323 -2.1547 -1.4701 39 1 10.7939 -4.1035 -6.2464 40 1 10.5878 0.7535 -3.6564 41 1 9.9068 2.4924 -2.0612 42 1 4.2324 -1.3459 -0.7347 43 1 4.1197 -0.8532 0.9842 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491576064.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:52:06 Heat of formation + Delta-G solvation = -32.717371 kcal Electronic energy + Delta-G solvation = -27174.090447 eV Core-core repulsion = 23186.266849 eV Total energy + Delta-G solvation = -3987.823598 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.86103 -39.59606 -38.71250 -36.98253 -36.34033 -34.54420 -33.10765 -32.18754 -31.53794 -30.14153 -28.25197 -27.76241 -26.62115 -25.42836 -23.62948 -21.89968 -21.65868 -20.95071 -20.04796 -19.23260 -17.94949 -17.42279 -17.08919 -16.85792 -16.50133 -15.90673 -15.16921 -14.90005 -14.66482 -14.47861 -14.23841 -14.02922 -13.93872 -13.70693 -13.57662 -13.39172 -13.15975 -12.94461 -12.75965 -12.62546 -12.56951 -12.21378 -12.02293 -11.69581 -11.48569 -11.39180 -11.03580 -10.73241 -10.58832 -10.39823 -10.22641 -9.59663 -9.47380 -9.21084 -9.13091 -9.10156 -8.72150 -7.99161 -6.90277 -6.46636 -4.02465 1.18874 2.34482 2.39782 2.58001 2.64145 3.12472 3.13467 3.14068 3.19644 3.51174 3.96431 4.01353 4.23042 4.59296 4.62213 4.67205 4.93317 4.99136 5.02350 5.04684 5.11751 5.17670 5.23558 5.31862 5.36660 5.52918 5.67422 5.71383 5.72193 5.82512 6.10977 6.23212 6.28287 6.31701 6.41267 6.56650 6.73414 6.76142 7.01023 7.11290 7.32959 7.41010 7.48934 7.51550 7.89149 7.90044 7.99675 8.41884 8.98938 9.70914 10.71190 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.014237 B = 0.002667 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.239172 B =10497.050763 C =11918.525447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.626 5.626 3 C 0.100 3.900 4 C 0.140 3.860 5 H 0.111 0.889 6 N -0.729 5.729 7 C 0.543 3.457 8 O -0.505 6.505 9 C -0.269 4.269 10 C 0.032 3.968 11 C -0.187 4.187 12 C 0.003 3.997 13 C -0.200 4.200 14 C 0.170 3.830 15 O -0.172 6.172 16 C -0.389 4.389 17 H 0.094 0.906 18 C 0.039 3.961 19 N -0.858 5.858 20 Si 0.942 3.058 21 H -0.266 1.266 22 H -0.275 1.275 23 H -0.276 1.276 24 C -0.247 4.247 25 C -0.042 4.042 26 C -0.168 4.168 27 C 0.522 3.478 28 O -0.528 6.528 29 H 0.083 0.917 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.398 0.602 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.101 0.899 38 H 0.114 0.886 39 H 0.270 0.730 40 H 0.126 0.874 41 H 0.106 0.894 42 H 0.113 0.887 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.177 14.714 14.178 24.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.362 5.362 3 C -0.024 4.024 4 C 0.034 3.966 5 H 0.129 0.871 6 N -0.383 5.383 7 C 0.333 3.667 8 O -0.380 6.380 9 C -0.290 4.290 10 C 0.012 3.988 11 C -0.188 4.188 12 C -0.016 4.016 13 C -0.219 4.219 14 C 0.115 3.885 15 O -0.074 6.074 16 C -0.465 4.465 17 H 0.111 0.889 18 C -0.166 4.166 19 N -0.492 5.492 20 Si 0.766 3.234 21 H -0.190 1.190 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.266 4.266 25 C -0.061 4.061 26 C -0.210 4.210 27 C 0.309 3.691 28 O -0.404 6.404 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.232 0.768 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.119 0.881 38 H 0.132 0.868 39 H 0.080 0.920 40 H 0.143 0.857 41 H 0.124 0.876 42 H 0.131 0.869 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.339 13.211 13.211 23.551 hybrid contribution 0.308 0.717 -0.201 0.805 sum -14.031 13.927 13.011 23.667 Atomic orbital electron populations 1.21574 0.77868 1.03921 1.01503 1.48140 1.06581 1.07057 1.74423 1.22258 0.90128 0.87651 1.02317 1.21619 0.85972 0.90014 0.99000 0.87060 1.45898 1.09203 1.54993 1.28246 1.18523 0.82084 0.80493 0.85620 1.91024 1.80441 1.42947 1.23558 1.22545 0.93464 1.08406 1.04629 1.22359 0.94354 0.91849 0.90196 1.18289 1.07030 0.93280 1.00239 1.20438 0.93352 0.91448 0.96323 1.20022 1.05463 0.99799 0.96636 1.19553 0.91305 0.88160 0.89481 1.83935 1.51951 1.34027 1.37507 1.21429 1.15503 1.03426 1.06181 0.88882 1.25339 0.98600 0.95086 0.97584 1.70032 1.40452 1.06433 1.32300 0.85634 0.79278 0.78848 0.79601 1.19030 1.20089 1.20109 1.20973 1.08949 0.93084 1.03611 1.20743 0.94434 0.97508 0.93367 1.22863 0.94195 0.98236 1.05687 1.20949 0.89200 0.84283 0.74635 1.90736 1.78573 1.21101 1.49969 0.89784 0.92071 0.91935 0.90587 0.89486 0.76752 0.86032 0.86016 0.88066 0.86770 0.91953 0.85650 0.87602 0.86881 0.87332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.62 11.14 59.85 0.67 1.29 16 2 N -0.63 -5.48 3.33 -180.29 -0.60 -6.09 16 3 C 0.10 0.61 7.07 -3.12 -0.02 0.59 16 4 C 0.14 1.26 3.43 -66.30 -0.23 1.03 16 5 H 0.11 1.22 7.72 -51.93 -0.40 0.82 16 6 N -0.73 -6.18 5.18 -53.66 -0.28 -6.45 16 7 C 0.54 6.88 6.81 -13.04 -0.09 6.79 16 8 O -0.50 -8.93 12.22 5.17 0.06 -8.87 16 9 C -0.27 -2.94 9.88 -37.51 -0.37 -3.31 16 10 C 0.03 0.41 9.79 -37.19 -0.36 0.05 16 11 C -0.19 -3.29 4.43 -105.02 -0.46 -3.76 16 12 C 0.00 0.06 6.75 -39.15 -0.26 -0.21 16 13 C -0.20 -4.49 9.97 -39.47 -0.39 -4.88 16 14 C 0.17 4.26 6.65 -38.89 -0.26 4.01 16 15 O -0.17 -5.03 9.74 0.72 0.01 -5.02 16 16 C -0.39 -11.02 9.41 30.91 0.29 -10.73 16 17 H 0.09 2.44 5.33 -52.49 -0.28 2.16 16 18 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 19 N -0.86 -25.46 13.67 55.48 0.76 -24.70 16 20 Si 0.94 20.66 29.55 -169.99 -5.02 15.64 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 24 C -0.25 -5.54 9.10 -39.47 -0.36 -5.90 16 25 C -0.04 -0.79 9.78 -39.14 -0.38 -1.18 16 26 C -0.17 -1.82 6.59 -26.74 -0.18 -2.00 16 27 C 0.52 6.38 8.02 -10.86 -0.09 6.29 16 28 O -0.53 -8.67 17.35 5.56 0.10 -8.58 16 29 H 0.08 0.68 7.53 -51.93 -0.39 0.29 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.31 7.77 -51.93 -0.40 -0.10 16 33 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.40 2.01 8.34 -40.82 -0.34 1.67 16 35 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 36 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.10 1.73 7.23 -52.48 -0.38 1.35 16 38 H 0.11 2.51 8.06 -52.49 -0.42 2.09 16 39 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.13 2.80 5.74 -52.49 -0.30 2.50 16 41 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 42 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 43 H 0.11 1.07 8.08 -51.93 -0.42 0.65 16 LS Contribution 367.55 15.07 5.54 5.54 Total: -1.00 -36.52 367.55 -7.47 -43.99 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -5.43 Total: 5.47 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -2.60 Total: -10.93 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: -0.12 Total: -37.24 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: 0.17 Total: -22.47 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.52 -7.47 -43.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491576064.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.271 kcal (2) G-P(sol) polarization free energy of solvation -36.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds