Wall clock time and date at job start Fri Apr 10 2020 14:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46771 * 124.34885 * 2 1 4 4 C 1.54478 * 105.47140 * 197.03782 * 3 2 1 5 5 H 1.08996 * 111.00030 * 92.72210 * 4 3 2 6 6 N 1.46502 * 110.96607 * 216.46213 * 4 3 2 7 7 C 1.34779 * 120.00004 * 198.83297 * 6 4 3 8 8 O 1.21718 * 119.99908 * 0.02562 * 7 6 4 9 9 C 1.46255 * 119.99865 * 179.97438 * 7 6 4 10 10 C 1.35018 * 120.00031 * 179.97438 * 9 7 6 11 11 C 1.46960 * 120.00380 * 180.02562 * 10 9 7 12 12 C 1.40026 * 120.10267 * 180.02562 * 11 10 9 13 13 C 1.37594 * 119.89660 * 179.97438 * 12 11 10 14 14 C 1.39178 * 120.10071 * 0.27233 * 13 12 11 15 15 O 1.35579 * 119.89553 * 179.70771 * 14 13 12 16 16 C 1.34781 * 117.00320 * 354.44312 * 15 14 13 17 17 H 1.08005 * 119.99725 * 5.05569 * 16 15 14 18 18 C 1.38715 * 120.00342 * 185.05925 * 16 15 14 19 19 N 1.31515 * 119.99717 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00159 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.46917 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47200 * 119.99800 * 20 18 16 23 23 H 1.48498 * 109.46657 * 239.99839 * 20 18 16 24 24 C 1.39173 * 120.20477 * 359.44770 * 14 13 12 25 25 C 1.37597 * 120.09926 * 0.55723 * 24 14 13 26 26 C 1.54618 * 101.76887 * 334.58394 * 4 3 2 27 27 C 1.34415 * 124.35324 * 180.02562 * 2 1 3 28 28 O 1.21284 * 124.94367 * 359.60738 * 27 2 1 29 29 H 1.09008 * 109.47004 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47155 * 299.99533 * 1 2 3 31 31 H 1.09001 * 109.47528 * 60.00137 * 1 2 3 32 32 H 1.09001 * 110.24513 * 78.03675 * 3 2 1 33 33 H 1.09003 * 110.24217 * 316.04173 * 3 2 1 34 34 H 0.97004 * 120.00347 * 18.84116 * 6 4 3 35 35 H 1.08003 * 120.00046 * 0.02562 * 9 7 6 36 36 H 1.08003 * 119.99920 * 0.02562 * 10 9 7 37 37 H 1.08002 * 120.05234 * 359.97438 * 12 11 10 38 38 H 1.08001 * 119.95149 * 180.02562 * 13 12 11 39 39 H 0.96993 * 119.99812 * 180.02562 * 19 18 16 40 40 H 1.08004 * 119.95204 * 180.27325 * 24 14 13 41 41 H 1.08000 * 120.05069 * 179.74232 * 25 24 14 42 42 H 1.09000 * 110.48906 * 143.47710 * 26 4 3 43 43 H 1.09003 * 110.49109 * 266.11995 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2931 1.2118 0.0000 4 6 3.7008 0.7488 -0.4362 5 1 3.8270 0.8452 -1.5146 6 7 4.7418 1.4911 0.2791 7 6 5.9993 1.5240 -0.2049 8 8 6.2699 0.9374 -1.2365 9 6 7.0384 2.2655 0.5089 10 6 8.2982 2.2981 0.0244 11 6 9.3425 3.0427 0.7419 12 6 10.6496 3.0783 0.2410 13 6 11.6239 3.7772 0.9159 14 6 11.3131 4.4434 2.0977 15 8 12.2777 5.1258 2.7625 16 6 13.5357 5.0241 2.2895 17 1 13.7259 4.4866 1.3723 18 6 14.5861 5.6097 2.9809 19 7 14.3544 6.2646 4.0976 20 14 16.3295 5.4694 2.3250 21 1 16.3218 4.6885 1.0620 22 1 16.8713 6.8273 2.0646 23 1 17.1814 4.7803 3.3273 24 6 10.0140 4.4156 2.5963 25 6 9.0332 3.7192 1.9282 26 6 3.6898 -0.7377 -0.0110 27 6 2.2234 -1.1097 -0.0005 28 8 1.7947 -2.2442 0.0058 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 2.3309 1.6428 1.0005 33 1 1.8981 1.9385 -0.7099 34 1 4.5261 1.9588 1.1011 35 1 6.7981 2.7864 1.4240 36 1 8.5385 1.7769 -0.8905 37 1 10.8926 2.5580 -0.6737 38 1 12.6322 3.8056 0.5301 39 1 15.0888 6.6744 4.5808 40 1 9.7764 4.9376 3.5115 41 1 8.0263 3.6947 2.3181 42 1 4.2324 -1.3456 -0.7349 43 1 4.1198 -0.8532 0.9840 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491576066.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:52:14 Heat of formation + Delta-G solvation = -49.344109 kcal Electronic energy + Delta-G solvation = -25747.428917 eV Core-core repulsion = 21758.884330 eV Total energy + Delta-G solvation = -3988.544587 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.00164 -39.52158 -39.14170 -37.09041 -36.80079 -34.74556 -33.28403 -32.38214 -31.68997 -30.47432 -28.47373 -27.92384 -26.74256 -25.70271 -23.72257 -22.30413 -21.84510 -20.93057 -20.08255 -19.35928 -18.24174 -17.47124 -17.29169 -17.00996 -16.79632 -16.04045 -15.35845 -14.97787 -14.94287 -14.78008 -14.45519 -14.18855 -14.01414 -13.85893 -13.83342 -13.71829 -13.35309 -13.08686 -12.89166 -12.73240 -12.64315 -12.23500 -11.99025 -11.81480 -11.76208 -11.66405 -11.17659 -11.12792 -10.70923 -10.56115 -10.41602 -9.92240 -9.67203 -9.53807 -9.34921 -9.23935 -8.90326 -8.42799 -7.16741 -6.69212 -4.23836 0.98794 2.09417 2.18307 2.42991 2.49031 2.97586 3.00915 3.02467 3.08252 3.44672 3.79014 3.85991 4.07274 4.42269 4.46731 4.48347 4.82584 4.86646 4.88177 4.91636 4.93653 4.99894 5.09944 5.21109 5.26010 5.42936 5.48792 5.49285 5.58875 5.61916 5.96419 5.97070 6.06533 6.14371 6.39411 6.42240 6.55375 6.59240 6.74313 6.87572 7.08455 7.18750 7.22999 7.36145 7.59432 7.73197 7.76269 8.18177 8.75692 9.42144 10.47358 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.039642 B = 0.001599 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.158354 B =17510.425039 C =17834.663237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.624 5.624 3 C 0.099 3.901 4 C 0.140 3.860 5 H 0.111 0.889 6 N -0.726 5.726 7 C 0.560 3.440 8 O -0.553 6.553 9 C -0.288 4.288 10 C 0.044 3.956 11 C -0.202 4.202 12 C -0.034 4.034 13 C -0.243 4.243 14 C 0.167 3.833 15 O -0.161 6.161 16 C -0.393 4.393 17 H 0.098 0.902 18 C 0.042 3.958 19 N -0.851 5.851 20 Si 0.945 3.055 21 H -0.264 1.264 22 H -0.274 1.274 23 H -0.274 1.274 24 C -0.200 4.200 25 C -0.042 4.042 26 C -0.168 4.168 27 C 0.521 3.479 28 O -0.530 6.530 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.403 0.597 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.114 0.886 38 H 0.131 0.869 39 H 0.274 0.726 40 H 0.121 0.879 41 H 0.118 0.882 42 H 0.110 0.890 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.026 -6.057 -6.032 22.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.360 5.360 3 C -0.025 4.025 4 C 0.033 3.967 5 H 0.129 0.871 6 N -0.379 5.379 7 C 0.353 3.647 8 O -0.432 6.432 9 C -0.309 4.309 10 C 0.024 3.976 11 C -0.203 4.203 12 C -0.052 4.052 13 C -0.262 4.262 14 C 0.111 3.889 15 O -0.062 6.062 16 C -0.468 4.468 17 H 0.116 0.884 18 C -0.165 4.165 19 N -0.483 5.483 20 Si 0.769 3.231 21 H -0.188 1.188 22 H -0.199 1.199 23 H -0.199 1.199 24 C -0.219 4.219 25 C -0.060 4.060 26 C -0.210 4.210 27 C 0.309 3.691 28 O -0.406 6.406 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.238 0.762 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.132 0.868 38 H 0.149 0.851 39 H 0.084 0.916 40 H 0.139 0.861 41 H 0.136 0.864 42 H 0.128 0.872 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -20.991 -6.767 -6.360 22.954 hybrid contribution 0.698 0.318 0.196 0.791 sum -20.294 -6.449 -6.164 22.168 Atomic orbital electron populations 1.21590 0.77707 1.03939 1.01675 1.48136 1.06667 1.07020 1.74178 1.22285 0.89887 0.87648 1.02681 1.21634 0.86191 0.90035 0.98833 0.87145 1.45778 1.08907 1.54668 1.28526 1.18437 0.82065 0.79830 0.84353 1.90796 1.81637 1.46123 1.24686 1.22360 0.93848 1.10221 1.04450 1.22304 0.91346 0.88682 0.95234 1.18450 0.93669 1.08633 0.99539 1.20996 0.91696 0.95092 0.97408 1.21106 1.00790 1.05905 0.98378 1.19624 0.89680 0.89079 0.90558 1.83903 1.16093 1.57063 1.49165 1.21540 0.79857 1.36373 1.09069 0.88431 1.25407 1.00063 0.95609 0.95392 1.70021 1.33343 1.30682 1.14279 0.85573 0.79818 0.78671 0.79005 1.18836 1.19894 1.19885 1.20151 0.91213 1.07495 1.03065 1.20874 0.97698 0.94168 0.93256 1.22861 0.94289 0.98103 1.05711 1.20921 0.89154 0.84318 0.74727 1.90735 1.78588 1.21093 1.50182 0.89775 0.91902 0.91872 0.90297 0.89282 0.76151 0.85765 0.85895 0.86783 0.85099 0.91601 0.86120 0.86390 0.87215 0.87172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.48 11.14 59.84 0.67 1.15 16 2 N -0.62 -4.45 3.33 -180.28 -0.60 -5.05 16 3 C 0.10 0.47 7.07 -3.12 -0.02 0.45 16 4 C 0.14 1.00 3.43 -66.30 -0.23 0.77 16 5 H 0.11 0.93 7.72 -51.93 -0.40 0.53 16 6 N -0.73 -5.57 5.18 -53.67 -0.28 -5.85 16 7 C 0.56 6.61 7.73 -13.04 -0.10 6.51 16 8 O -0.55 -8.51 15.97 5.17 0.08 -8.43 16 9 C -0.29 -3.42 9.41 -37.51 -0.35 -3.78 16 10 C 0.04 0.61 9.45 -37.19 -0.35 0.26 16 11 C -0.20 -3.24 5.87 -105.03 -0.62 -3.86 16 12 C -0.03 -0.57 9.78 -39.15 -0.38 -0.95 16 13 C -0.24 -4.86 9.14 -39.47 -0.36 -5.23 16 14 C 0.17 3.73 6.66 -38.89 -0.26 3.47 16 15 O -0.16 -4.29 9.74 0.71 0.01 -4.28 16 16 C -0.39 -10.25 9.48 30.91 0.29 -9.95 16 17 H 0.10 2.34 5.18 -52.48 -0.27 2.07 16 18 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 19 N -0.85 -23.43 13.67 55.48 0.76 -22.67 16 20 Si 0.95 19.19 29.55 -169.99 -5.02 14.17 16 21 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 22 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 23 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 24 C -0.20 -3.84 9.97 -39.47 -0.39 -4.23 16 25 C -0.04 -0.67 9.40 -39.15 -0.37 -1.04 16 26 C -0.17 -1.45 6.59 -26.75 -0.18 -1.62 16 27 C 0.52 5.31 8.02 -10.86 -0.09 5.22 16 28 O -0.53 -7.54 17.35 5.55 0.10 -7.44 16 29 H 0.08 0.55 7.53 -51.92 -0.39 0.16 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.08 0.26 7.77 -51.93 -0.40 -0.15 16 33 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.40 1.97 8.34 -40.82 -0.34 1.63 16 35 H 0.12 1.23 6.07 -52.48 -0.32 0.91 16 36 H 0.12 1.71 7.52 -52.48 -0.39 1.31 16 37 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 38 H 0.13 2.61 5.62 -52.49 -0.29 2.32 16 39 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 40 H 0.12 2.20 8.06 -52.48 -0.42 1.78 16 41 H 0.12 1.49 6.16 -52.49 -0.32 1.17 16 42 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.11 0.90 8.08 -51.93 -0.42 0.48 16 LS Contribution 371.76 15.07 5.60 5.60 Total: -1.00 -33.13 371.76 -7.42 -40.55 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -5.23 Total: 5.24 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -2.84 Total: -11.84 kcal Atomic # 7 Polarization: -33.45 SS G_CDS: -0.12 Total: -33.57 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: 0.19 Total: -20.16 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.17 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.13 -7.42 -40.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491576066.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.791 kcal (2) G-P(sol) polarization free energy of solvation -33.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds