Wall clock time and date at job start Fri Apr 10 2020 14:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46771 * 124.34885 * 2 1 4 4 C 1.54478 * 105.47140 * 197.03782 * 3 2 1 5 5 H 1.08996 * 111.00030 * 92.72210 * 4 3 2 6 6 N 1.46502 * 110.96607 * 216.46213 * 4 3 2 7 7 C 1.34779 * 120.00004 * 198.83297 * 6 4 3 8 8 O 1.21718 * 119.99908 * 0.02562 * 7 6 4 9 9 C 1.46255 * 119.99865 * 179.97438 * 7 6 4 10 10 C 1.35018 * 120.00031 * 179.97438 * 9 7 6 11 11 C 1.46960 * 120.00380 * 180.02562 * 10 9 7 12 12 C 1.40026 * 120.10267 * 180.02562 * 11 10 9 13 13 C 1.37594 * 119.89660 * 179.97438 * 12 11 10 14 14 C 1.39178 * 120.10071 * 0.27233 * 13 12 11 15 15 O 1.35579 * 119.89553 * 179.70771 * 14 13 12 16 16 C 1.34781 * 117.00320 * 354.44312 * 15 14 13 17 17 H 1.08005 * 119.99725 * 5.05569 * 16 15 14 18 18 C 1.38715 * 120.00342 * 185.05925 * 16 15 14 19 19 N 1.31515 * 119.99717 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00159 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.46917 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47200 * 119.99800 * 20 18 16 23 23 H 1.48498 * 109.46657 * 239.99839 * 20 18 16 24 24 C 1.39173 * 120.20477 * 359.44770 * 14 13 12 25 25 C 1.37597 * 120.09926 * 0.55723 * 24 14 13 26 26 C 1.54618 * 101.76887 * 334.58394 * 4 3 2 27 27 C 1.34415 * 124.35324 * 180.02562 * 2 1 3 28 28 O 1.21284 * 124.94367 * 359.60738 * 27 2 1 29 29 H 1.09008 * 109.47004 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47155 * 299.99533 * 1 2 3 31 31 H 1.09001 * 109.47528 * 60.00137 * 1 2 3 32 32 H 1.09001 * 110.24513 * 78.03675 * 3 2 1 33 33 H 1.09003 * 110.24217 * 316.04173 * 3 2 1 34 34 H 0.97004 * 120.00347 * 18.84116 * 6 4 3 35 35 H 1.08003 * 120.00046 * 0.02562 * 9 7 6 36 36 H 1.08003 * 119.99920 * 0.02562 * 10 9 7 37 37 H 1.08002 * 120.05234 * 359.97438 * 12 11 10 38 38 H 1.08001 * 119.95149 * 180.02562 * 13 12 11 39 39 H 0.96993 * 119.99812 * 180.02562 * 19 18 16 40 40 H 1.08004 * 119.95204 * 180.27325 * 24 14 13 41 41 H 1.08000 * 120.05069 * 179.74232 * 25 24 14 42 42 H 1.09000 * 110.48906 * 143.47710 * 26 4 3 43 43 H 1.09003 * 110.49109 * 266.11995 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2931 1.2118 0.0000 4 6 3.7008 0.7488 -0.4362 5 1 3.8270 0.8452 -1.5146 6 7 4.7418 1.4911 0.2791 7 6 5.9993 1.5240 -0.2049 8 8 6.2699 0.9374 -1.2365 9 6 7.0384 2.2655 0.5089 10 6 8.2982 2.2981 0.0244 11 6 9.3425 3.0427 0.7419 12 6 10.6496 3.0783 0.2410 13 6 11.6239 3.7772 0.9159 14 6 11.3131 4.4434 2.0977 15 8 12.2777 5.1258 2.7625 16 6 13.5357 5.0241 2.2895 17 1 13.7259 4.4866 1.3723 18 6 14.5861 5.6097 2.9809 19 7 14.3544 6.2646 4.0976 20 14 16.3295 5.4694 2.3250 21 1 16.3218 4.6885 1.0620 22 1 16.8713 6.8273 2.0646 23 1 17.1814 4.7803 3.3273 24 6 10.0140 4.4156 2.5963 25 6 9.0332 3.7192 1.9282 26 6 3.6898 -0.7377 -0.0110 27 6 2.2234 -1.1097 -0.0005 28 8 1.7947 -2.2442 0.0058 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 2.3309 1.6428 1.0005 33 1 1.8981 1.9385 -0.7099 34 1 4.5261 1.9588 1.1011 35 1 6.7981 2.7864 1.4240 36 1 8.5385 1.7769 -0.8905 37 1 10.8926 2.5580 -0.6737 38 1 12.6322 3.8056 0.5301 39 1 15.0888 6.6744 4.5808 40 1 9.7764 4.9376 3.5115 41 1 8.0263 3.6947 2.3181 42 1 4.2324 -1.3456 -0.7349 43 1 4.1198 -0.8532 0.9840 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491576066.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:52:13 Heat of formation + Delta-G solvation = -72.515228 kcal Electronic energy + Delta-G solvation = -25748.433692 eV Core-core repulsion = 21758.884330 eV Total energy + Delta-G solvation = -3989.549362 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.71094 -40.84525 -40.34242 -38.49571 -37.73425 -35.50429 -34.71338 -33.98557 -32.43896 -31.93401 -29.73406 -28.56665 -27.59470 -27.22391 -24.83810 -23.71809 -22.81403 -21.92474 -20.96119 -20.45570 -19.71859 -18.83684 -18.39860 -17.85452 -17.57875 -16.77529 -16.46714 -16.37398 -16.06408 -15.92305 -15.78544 -15.59143 -15.20190 -14.78646 -14.75383 -14.61520 -14.52340 -14.25085 -14.07527 -13.59241 -13.36328 -13.30100 -13.20787 -13.12067 -12.82429 -12.71708 -12.53591 -12.31515 -12.17127 -12.10184 -11.26394 -11.18964 -11.09933 -10.94144 -10.55871 -10.12315 -9.86346 -9.79869 -8.65115 -8.51498 -6.17400 -0.21103 0.61357 1.15707 1.36603 1.42201 1.45837 1.54209 1.87016 2.15780 2.23455 2.39110 2.87943 3.19983 3.27539 3.45077 3.46583 3.74748 3.91329 3.97834 3.98905 4.11445 4.34353 4.37758 4.40239 4.44194 4.50847 4.57411 4.67423 4.69278 4.78546 4.87207 4.89121 4.97859 5.05438 5.22475 5.31202 5.36725 5.44977 5.45332 5.61746 5.66698 5.85063 5.96546 5.98906 6.13760 6.60298 6.93319 7.01612 7.30030 7.70861 8.70765 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.039642 B = 0.001599 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.158354 B =17510.425039 C =17834.663237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.618 5.618 3 C 0.104 3.896 4 C 0.142 3.858 5 H 0.100 0.900 6 N -0.702 5.702 7 C 0.556 3.444 8 O -0.588 6.588 9 C -0.242 4.242 10 C 0.014 3.986 11 C -0.169 4.169 12 C -0.042 4.042 13 C -0.250 4.250 14 C 0.128 3.872 15 O -0.221 6.221 16 C -0.416 4.416 17 H 0.105 0.895 18 C -0.018 4.018 19 N -0.914 5.914 20 Si 1.018 2.982 21 H -0.251 1.251 22 H -0.268 1.268 23 H -0.269 1.269 24 C -0.207 4.207 25 C -0.036 4.036 26 C -0.165 4.165 27 C 0.512 3.488 28 O -0.582 6.582 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.114 0.886 34 H 0.422 0.578 35 H 0.157 0.843 36 H 0.123 0.877 37 H 0.143 0.857 38 H 0.122 0.878 39 H 0.275 0.725 40 H 0.123 0.877 41 H 0.165 0.835 42 H 0.093 0.907 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.421 -6.461 -7.135 26.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.352 5.352 3 C -0.018 4.018 4 C 0.036 3.964 5 H 0.118 0.882 6 N -0.355 5.355 7 C 0.348 3.652 8 O -0.470 6.470 9 C -0.263 4.263 10 C -0.006 4.006 11 C -0.170 4.170 12 C -0.060 4.060 13 C -0.270 4.270 14 C 0.076 3.924 15 O -0.126 6.126 16 C -0.492 4.492 17 H 0.122 0.878 18 C -0.217 4.217 19 N -0.551 5.551 20 Si 0.837 3.163 21 H -0.175 1.175 22 H -0.193 1.193 23 H -0.194 1.194 24 C -0.226 4.226 25 C -0.054 4.054 26 C -0.206 4.206 27 C 0.301 3.699 28 O -0.462 6.462 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.125 0.875 33 H 0.132 0.868 34 H 0.261 0.739 35 H 0.174 0.826 36 H 0.141 0.859 37 H 0.160 0.840 38 H 0.140 0.860 39 H 0.084 0.916 40 H 0.141 0.859 41 H 0.182 0.818 42 H 0.111 0.889 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -24.485 -7.153 -7.478 26.582 hybrid contribution 1.060 0.165 0.317 1.119 sum -23.425 -6.988 -7.161 25.472 Atomic orbital electron populations 1.21770 0.76467 1.03367 1.03789 1.48283 1.07613 1.06940 1.72352 1.22455 0.87569 0.86789 1.04997 1.21614 0.87466 0.89059 0.98289 0.88173 1.45554 1.07643 1.53508 1.28769 1.18492 0.83231 0.79576 0.83908 1.90812 1.82415 1.47467 1.26330 1.22755 0.92821 1.06733 1.03965 1.22168 0.91659 0.90633 0.96140 1.18796 0.93653 1.06000 0.98579 1.21323 0.91668 0.94751 0.98276 1.21195 1.01346 1.06290 0.98128 1.20221 0.90348 0.90225 0.91597 1.83883 1.16742 1.60585 1.51385 1.21926 0.80585 1.37024 1.09635 0.87767 1.26582 1.04303 0.95193 0.95606 1.70151 1.34549 1.33779 1.16573 0.84533 0.74137 0.78892 0.78721 1.17469 1.19309 1.19386 1.20445 0.90749 1.07882 1.03566 1.21315 0.98933 0.92477 0.92639 1.22794 0.93324 0.98885 1.05623 1.21165 0.90027 0.84278 0.74441 1.90706 1.79439 1.23206 1.52898 0.91771 0.89622 0.89845 0.87453 0.86782 0.73868 0.82600 0.85864 0.83957 0.86020 0.91632 0.85913 0.81789 0.88874 0.86533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.65 11.14 127.77 1.42 2.07 16 2 N -0.62 -6.85 3.33 -842.89 -2.81 -9.65 16 3 C 0.10 0.47 7.07 86.83 0.61 1.09 16 4 C 0.14 1.49 3.43 46.04 0.16 1.65 16 5 H 0.10 1.37 7.72 -2.39 -0.02 1.35 16 6 N -0.70 -7.08 5.18 -441.92 -2.29 -9.37 16 7 C 0.56 10.50 7.73 86.33 0.67 11.17 16 8 O -0.59 -16.24 15.97 -4.41 -0.07 -16.31 16 9 C -0.24 -4.37 9.41 23.61 0.22 -4.15 16 10 C 0.01 0.32 9.45 23.82 0.23 0.55 16 11 C -0.17 -4.86 5.87 -20.13 -0.12 -4.97 16 12 C -0.04 -1.37 9.78 22.55 0.22 -1.15 16 13 C -0.25 -10.24 9.14 22.34 0.20 -10.04 16 14 C 0.13 5.95 6.66 22.72 0.15 6.10 16 15 O -0.22 -12.60 9.74 -20.36 -0.20 -12.79 16 16 C -0.42 -23.15 9.48 67.93 0.64 -22.51 16 17 H 0.11 5.32 5.18 -2.91 -0.02 5.30 16 18 C -0.02 -0.99 5.49 84.85 0.47 -0.52 16 19 N -0.91 -53.85 13.67 21.62 0.30 -53.55 16 20 Si 1.02 41.15 29.55 68.60 2.03 43.17 16 21 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 22 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 23 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 24 C -0.21 -7.87 9.97 22.34 0.22 -7.65 16 25 C -0.04 -1.03 9.40 22.55 0.21 -0.82 16 26 C -0.16 -2.49 6.59 30.59 0.20 -2.29 16 27 C 0.51 9.70 8.02 87.90 0.71 10.41 16 28 O -0.58 -16.65 17.35 -3.04 -0.05 -16.70 16 29 H 0.06 0.77 7.53 -2.38 -0.02 0.75 16 30 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.11 -0.01 7.77 -2.39 -0.02 -0.03 16 33 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 34 H 0.42 1.30 8.34 -92.71 -0.77 0.53 16 35 H 0.16 1.85 6.07 -2.91 -0.02 1.84 16 36 H 0.12 3.00 7.52 -2.91 -0.02 2.98 16 37 H 0.14 3.76 8.06 -2.91 -0.02 3.73 16 38 H 0.12 5.09 5.62 -2.91 -0.02 5.08 16 39 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 40 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 41 H 0.16 3.11 6.16 -2.91 -0.02 3.09 16 42 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.12 1.58 8.08 -2.39 -0.02 1.56 16 Total: -1.00 -80.83 371.76 3.41 -77.42 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 0.29 Total: 18.84 kcal Atomic # 6 Polarization: -27.28 SS G_CDS: 6.22 Total: -21.05 kcal Atomic # 7 Polarization: -67.77 SS G_CDS: -4.80 Total: -72.58 kcal Atomic # 8 Polarization: -45.48 SS G_CDS: -0.32 Total: -45.80 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.17 kcal Total: -80.83 3.41 -77.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491576066.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.907 kcal (2) G-P(sol) polarization free energy of solvation -80.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds