Wall clock time and date at job start Fri Apr 10 2020 14:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46508 * 120.00138 * 2 1 4 4 H 1.08991 * 109.73556 * 179.59429 * 3 2 1 5 5 C 1.53342 * 109.59879 * 59.18875 * 3 2 1 6 6 C 1.53071 * 108.42408 * 172.71696 * 5 3 2 7 7 C 1.50171 * 109.89398 * 48.89691 * 6 5 3 8 8 O 1.21278 * 118.24570 * 162.44155 * 7 6 5 9 9 N 1.33093 * 123.42408 * 342.23739 * 7 6 5 10 10 C 1.46497 * 117.74629 * 182.38364 * 9 7 6 11 11 C 1.45756 * 124.30906 * 2.60530 * 9 7 6 12 12 S 1.65606 * 120.00221 * 180.02562 * 2 1 3 13 13 O 1.42096 * 104.27703 * 26.06697 * 12 2 1 14 14 O 1.42094 * 104.27735 * 153.92548 * 12 2 1 15 15 C 1.81398 * 104.44523 * 269.99620 * 12 2 1 16 16 C 1.53009 * 109.46924 * 173.95290 * 15 12 2 17 17 C 1.50689 * 115.55111 * 65.19822 * 16 15 12 18 18 H 1.08005 * 120.00391 * 264.78738 * 17 16 15 19 19 C 1.37872 * 120.00086 * 84.78210 * 17 16 15 20 20 N 1.31513 * 120.00172 * 352.22810 * 19 17 16 21 21 Si 1.86804 * 120.00024 * 172.22371 * 19 17 16 22 22 H 1.48500 * 109.47109 * 60.00601 * 21 19 17 23 23 H 1.48502 * 109.47071 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47233 * 300.00379 * 21 19 17 25 25 C 1.52998 * 117.49377 * 279.52793 * 16 15 12 26 26 C 1.52999 * 117.49777 * 210.87066 * 16 15 12 27 27 H 1.08997 * 109.47325 * 90.00164 * 1 2 3 28 28 H 1.09000 * 109.46861 * 209.99593 * 1 2 3 29 29 H 1.09003 * 109.46929 * 329.99295 * 1 2 3 30 30 H 1.09003 * 109.67376 * 292.44560 * 5 3 2 31 31 H 1.09001 * 109.67884 * 52.97880 * 5 3 2 32 32 H 1.08999 * 109.40294 * 169.03309 * 6 5 3 33 33 H 1.09005 * 109.39739 * 288.85429 * 6 5 3 34 34 H 1.09003 * 109.47261 * 270.20837 * 10 9 7 35 35 H 1.09002 * 109.47228 * 30.20770 * 10 9 7 36 36 H 1.08999 * 109.47486 * 150.20513 * 10 9 7 37 37 H 1.08998 * 109.29943 * 220.39077 * 11 9 7 38 38 H 1.09000 * 109.30172 * 100.80810 * 11 9 7 39 39 H 1.09000 * 109.47693 * 293.95028 * 15 12 2 40 40 H 1.09004 * 109.47315 * 53.95792 * 15 12 2 41 41 H 0.96997 * 120.00230 * 185.02649 * 20 19 17 42 42 H 1.09000 * 117.50700 * 359.97438 * 25 16 15 43 43 H 1.09007 * 117.49668 * 145.02185 * 25 16 15 44 44 H 1.08997 * 117.49836 * 214.97690 * 26 16 15 45 45 H 1.09003 * 117.49867 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 1 3.2700 1.0746 0.0073 5 6 1.8139 2.0842 1.2407 6 6 2.7228 3.3139 1.3114 7 6 2.7531 4.0042 -0.0219 8 8 3.1487 5.1498 -0.0661 9 7 2.3724 3.4232 -1.1571 10 6 2.5036 4.1946 -2.3956 11 6 1.8301 2.0733 -1.2475 12 16 2.2931 -1.4342 -0.0006 13 8 1.3970 -2.3559 -0.6062 14 8 3.5394 -1.1189 -0.6058 15 6 2.5194 -1.8268 1.7558 16 6 3.1461 -3.2160 1.8912 17 6 4.5451 -3.3537 1.3486 18 1 4.7015 -3.7219 0.3453 19 6 5.6257 -3.0094 2.1327 20 7 5.4351 -2.4195 3.2925 21 14 7.3604 -3.3812 1.5477 22 1 7.6109 -2.6787 0.2636 23 1 8.3364 -2.9157 2.5656 24 1 7.5129 -4.8449 1.3493 25 6 2.2172 -4.4252 1.7650 26 6 2.7857 -4.0357 3.1318 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5140 30 1 0.7737 2.4007 1.1646 31 1 1.9486 1.4764 2.1354 32 1 2.3431 4.0018 2.0668 33 1 3.7324 3.0029 1.5798 34 1 1.5874 4.7584 -2.5713 35 1 3.3431 4.8842 -2.3069 36 1 2.6781 3.5155 -3.2300 37 1 2.2394 1.5789 -2.1285 38 1 0.7450 2.1261 -1.3356 39 1 3.1761 -1.0860 2.2121 40 1 1.5524 -1.8139 2.2586 41 1 6.1951 -2.1117 3.8108 42 1 1.1597 -4.2311 1.5860 43 1 2.6183 -5.3205 1.2898 44 1 3.5605 -4.6748 3.5553 45 1 2.1025 -3.5851 3.8518 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601458082.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:52:22 Heat of formation + Delta-G solvation = -73.823720 kcal Electronic energy + Delta-G solvation = -28085.128517 eV Core-core repulsion = 24230.966366 eV Total energy + Delta-G solvation = -3854.162151 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.65108 -37.65920 -36.81872 -36.42291 -35.26947 -35.10735 -33.21546 -32.09537 -29.18522 -28.24388 -27.25982 -26.19616 -25.48771 -24.30385 -21.91157 -21.27049 -19.61870 -18.74950 -18.53595 -17.25909 -16.77668 -16.70611 -16.38294 -16.09424 -15.36322 -15.17629 -14.72994 -14.54290 -14.29643 -14.05751 -13.82422 -13.64452 -13.36229 -13.16790 -12.83932 -12.51248 -12.43803 -12.22839 -12.01049 -11.88344 -11.82930 -11.56566 -11.37793 -11.35948 -11.14206 -11.04147 -10.95028 -10.86423 -10.65682 -10.51509 -10.17891 -9.80379 -9.76996 -9.08826 -9.00881 -8.84700 -8.61356 -8.14623 -6.19070 -4.30012 0.88394 2.55533 2.80245 3.21444 3.29243 3.31854 3.37936 4.33086 4.36186 4.42362 4.43855 4.58571 4.64754 4.85425 4.99704 5.07543 5.08978 5.13194 5.16513 5.20879 5.34134 5.38436 5.47996 5.54338 5.60518 5.64594 5.69208 5.72458 5.80548 5.88217 5.88404 6.11786 6.19803 6.21139 6.31170 6.54377 6.63027 6.66513 6.93120 7.17947 7.29935 7.33591 7.75304 8.04062 8.14492 8.75365 9.41635 10.88480 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.013727 B = 0.004488 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.252673 B = 6236.808276 C = 7152.873419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -1.007 6.007 3 C 0.134 3.866 4 H 0.115 0.885 5 C -0.137 4.137 6 C -0.134 4.134 7 C 0.516 3.484 8 O -0.558 6.558 9 N -0.603 5.603 10 C 0.077 3.923 11 C 0.107 3.893 12 S 2.602 3.398 13 O -0.966 6.966 14 O -0.945 6.945 15 C -0.551 4.551 16 C 0.042 3.958 17 C -0.518 4.518 18 H 0.068 0.932 19 C 0.084 3.916 20 N -0.874 5.874 21 Si 0.889 3.111 22 H -0.270 1.270 23 H -0.285 1.285 24 H -0.273 1.273 25 C -0.208 4.208 26 C -0.140 4.140 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.055 0.945 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.134 0.866 40 H 0.098 0.902 41 H 0.264 0.736 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.643 9.221 -4.155 14.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.841 5.841 3 C 0.027 3.973 4 H 0.133 0.867 5 C -0.176 4.176 6 C -0.174 4.174 7 C 0.305 3.695 8 O -0.437 6.437 9 N -0.336 5.336 10 C -0.066 4.066 11 C -0.018 4.018 12 S 2.700 3.300 13 O -0.957 6.957 14 O -0.936 6.936 15 C -0.684 4.684 16 C 0.040 3.960 17 C -0.555 4.555 18 H 0.086 0.914 19 C -0.122 4.122 20 N -0.510 5.510 21 Si 0.716 3.284 22 H -0.195 1.195 23 H -0.211 1.211 24 H -0.198 1.198 25 C -0.245 4.245 26 C -0.180 4.180 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.152 0.848 40 H 0.117 0.883 41 H 0.074 0.926 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.106 9.369 -4.789 14.589 hybrid contribution 0.729 -0.023 0.506 0.888 sum -9.377 9.346 -4.283 13.915 Atomic orbital electron populations 1.21410 0.79114 1.02861 1.02023 1.57979 1.14862 1.20882 1.90409 1.21039 0.98393 0.83949 0.93935 0.86705 1.22117 1.00094 0.96133 0.99254 1.21653 1.03370 0.97832 0.94580 1.20171 0.76620 0.86700 0.86040 1.90702 1.47733 1.18230 1.87071 1.47106 1.63293 1.15394 1.07855 1.21730 1.02671 0.96697 0.85455 1.21792 0.99207 0.81090 0.99688 1.05486 0.73325 0.72075 0.79069 1.93502 1.65338 1.61719 1.75101 1.93537 1.43157 1.82142 1.74720 1.30010 1.07248 1.09690 1.21453 1.18286 0.93678 0.83456 1.00580 1.20472 0.88002 1.46523 1.00481 0.91431 1.24935 0.99288 0.93734 0.94199 1.69956 1.31388 1.37139 1.12467 0.86675 0.83507 0.79241 0.78986 1.19466 1.21061 1.19833 1.23202 0.97537 1.01298 1.02507 1.22555 1.01440 1.04095 0.89869 0.92615 0.90870 0.91259 0.90580 0.89236 0.87680 0.87450 0.92659 0.90171 0.91071 0.89745 0.90957 0.84783 0.88340 0.92608 0.90696 0.89509 0.89561 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.93 9.09 59.85 0.54 1.47 16 2 N -1.01 -13.44 3.02 -114.46 -0.35 -13.78 16 3 C 0.13 1.65 2.52 -67.79 -0.17 1.48 16 4 H 0.12 1.65 6.88 -51.93 -0.36 1.29 16 5 C -0.14 -1.37 5.11 -26.52 -0.14 -1.50 16 6 C -0.13 -1.43 6.03 -28.10 -0.17 -1.60 16 7 C 0.52 6.81 7.46 -11.99 -0.09 6.73 16 8 O -0.56 -9.20 16.20 5.56 0.09 -9.11 16 9 N -0.60 -7.03 3.20 -182.93 -0.59 -7.61 16 10 C 0.08 0.77 10.21 59.85 0.61 1.38 16 11 C 0.11 1.15 5.83 -4.48 -0.03 1.13 16 12 S 2.60 48.75 5.10 -107.50 -0.55 48.20 16 13 O -0.97 -19.74 17.09 -57.54 -0.98 -20.72 16 14 O -0.95 -20.98 16.24 -57.54 -0.93 -21.91 16 15 C -0.55 -10.76 6.03 37.16 0.22 -10.54 16 16 C 0.04 0.99 1.32 -155.66 -0.21 0.78 16 17 C -0.52 -13.70 8.18 -34.45 -0.28 -13.98 16 18 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 19 C 0.08 2.22 5.38 -17.82 -0.10 2.12 16 20 N -0.87 -23.28 12.98 55.43 0.72 -22.57 16 21 Si 0.89 20.88 29.55 -169.99 -5.02 15.86 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 23 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 25 C -0.21 -4.38 9.96 -26.70 -0.27 -4.65 16 26 C -0.14 -3.07 9.49 -26.69 -0.25 -3.33 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.74 7.79 -51.93 -0.40 0.33 16 29 H 0.07 0.52 6.57 -51.93 -0.34 0.17 16 30 H 0.08 0.63 6.99 -51.93 -0.36 0.27 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.89 7.20 -51.93 -0.37 0.52 16 36 H 0.07 0.57 7.86 -51.93 -0.41 0.16 16 37 H 0.08 0.92 7.92 -51.93 -0.41 0.51 16 38 H 0.07 0.65 7.37 -51.93 -0.38 0.26 16 39 H 0.13 2.72 8.14 -51.92 -0.42 2.30 16 40 H 0.10 1.59 8.09 -51.92 -0.42 1.17 16 41 H 0.26 6.75 8.32 -40.82 -0.34 6.41 16 42 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.09 1.82 8.14 -51.92 -0.42 1.39 16 44 H 0.09 2.01 8.14 -51.93 -0.42 1.58 16 45 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 375.54 15.07 5.66 5.66 Total: -1.00 -33.47 375.54 -9.50 -42.97 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -7.24 Total: 3.51 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: -0.31 Total: -20.50 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: -0.21 Total: -43.96 kcal Atomic # 8 Polarization: -49.91 SS G_CDS: -1.83 Total: -51.74 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 48.75 SS G_CDS: -0.55 Total: 48.20 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.47 -9.50 -42.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601458082.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.852 kcal (2) G-P(sol) polarization free energy of solvation -33.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds