Wall clock time and date at job start Fri Apr 10 2020 14:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46508 * 120.00138 * 2 1 4 4 H 1.08991 * 109.73556 * 179.59429 * 3 2 1 5 5 C 1.53342 * 109.59879 * 59.18875 * 3 2 1 6 6 C 1.53071 * 108.42408 * 172.71696 * 5 3 2 7 7 C 1.50171 * 109.89398 * 48.89691 * 6 5 3 8 8 O 1.21278 * 118.24570 * 162.44155 * 7 6 5 9 9 N 1.33093 * 123.42408 * 342.23739 * 7 6 5 10 10 C 1.46497 * 117.74629 * 182.38364 * 9 7 6 11 11 C 1.45756 * 124.30906 * 2.60530 * 9 7 6 12 12 S 1.65606 * 120.00221 * 180.02562 * 2 1 3 13 13 O 1.42096 * 104.27703 * 26.06697 * 12 2 1 14 14 O 1.42094 * 104.27735 * 153.92548 * 12 2 1 15 15 C 1.81398 * 104.44523 * 269.99620 * 12 2 1 16 16 C 1.53009 * 109.46924 * 173.95290 * 15 12 2 17 17 C 1.50689 * 115.55111 * 65.19822 * 16 15 12 18 18 H 1.08005 * 120.00391 * 264.78738 * 17 16 15 19 19 C 1.37872 * 120.00086 * 84.78210 * 17 16 15 20 20 N 1.31513 * 120.00172 * 352.22810 * 19 17 16 21 21 Si 1.86804 * 120.00024 * 172.22371 * 19 17 16 22 22 H 1.48500 * 109.47109 * 60.00601 * 21 19 17 23 23 H 1.48502 * 109.47071 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47233 * 300.00379 * 21 19 17 25 25 C 1.52998 * 117.49377 * 279.52793 * 16 15 12 26 26 C 1.52999 * 117.49777 * 210.87066 * 16 15 12 27 27 H 1.08997 * 109.47325 * 90.00164 * 1 2 3 28 28 H 1.09000 * 109.46861 * 209.99593 * 1 2 3 29 29 H 1.09003 * 109.46929 * 329.99295 * 1 2 3 30 30 H 1.09003 * 109.67376 * 292.44560 * 5 3 2 31 31 H 1.09001 * 109.67884 * 52.97880 * 5 3 2 32 32 H 1.08999 * 109.40294 * 169.03309 * 6 5 3 33 33 H 1.09005 * 109.39739 * 288.85429 * 6 5 3 34 34 H 1.09003 * 109.47261 * 270.20837 * 10 9 7 35 35 H 1.09002 * 109.47228 * 30.20770 * 10 9 7 36 36 H 1.08999 * 109.47486 * 150.20513 * 10 9 7 37 37 H 1.08998 * 109.29943 * 220.39077 * 11 9 7 38 38 H 1.09000 * 109.30172 * 100.80810 * 11 9 7 39 39 H 1.09000 * 109.47693 * 293.95028 * 15 12 2 40 40 H 1.09004 * 109.47315 * 53.95792 * 15 12 2 41 41 H 0.96997 * 120.00230 * 185.02649 * 20 19 17 42 42 H 1.09000 * 117.50700 * 359.97438 * 25 16 15 43 43 H 1.09007 * 117.49668 * 145.02185 * 25 16 15 44 44 H 1.08997 * 117.49836 * 214.97690 * 26 16 15 45 45 H 1.09003 * 117.49867 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 1 3.2700 1.0746 0.0073 5 6 1.8139 2.0842 1.2407 6 6 2.7228 3.3139 1.3114 7 6 2.7531 4.0042 -0.0219 8 8 3.1487 5.1498 -0.0661 9 7 2.3724 3.4232 -1.1571 10 6 2.5036 4.1946 -2.3956 11 6 1.8301 2.0733 -1.2475 12 16 2.2931 -1.4342 -0.0006 13 8 1.3970 -2.3559 -0.6062 14 8 3.5394 -1.1189 -0.6058 15 6 2.5194 -1.8268 1.7558 16 6 3.1461 -3.2160 1.8912 17 6 4.5451 -3.3537 1.3486 18 1 4.7015 -3.7219 0.3453 19 6 5.6257 -3.0094 2.1327 20 7 5.4351 -2.4195 3.2925 21 14 7.3604 -3.3812 1.5477 22 1 7.6109 -2.6787 0.2636 23 1 8.3364 -2.9157 2.5656 24 1 7.5129 -4.8449 1.3493 25 6 2.2172 -4.4252 1.7650 26 6 2.7857 -4.0357 3.1318 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5140 30 1 0.7737 2.4007 1.1646 31 1 1.9486 1.4764 2.1354 32 1 2.3431 4.0018 2.0668 33 1 3.7324 3.0029 1.5798 34 1 1.5874 4.7584 -2.5713 35 1 3.3431 4.8842 -2.3069 36 1 2.6781 3.5155 -3.2300 37 1 2.2394 1.5789 -2.1285 38 1 0.7450 2.1261 -1.3356 39 1 3.1761 -1.0860 2.2121 40 1 1.5524 -1.8139 2.2586 41 1 6.1951 -2.1117 3.8108 42 1 1.1597 -4.2311 1.5860 43 1 2.6183 -5.3205 1.2898 44 1 3.5605 -4.6748 3.5553 45 1 2.1025 -3.5851 3.8518 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601458082.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:52:21 Heat of formation + Delta-G solvation = -96.988846 kcal Electronic energy + Delta-G solvation = -28086.133033 eV Core-core repulsion = 24230.966366 eV Total energy + Delta-G solvation = -3855.166667 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.61024 -38.70744 -38.52795 -37.97648 -36.77998 -36.15302 -34.10994 -34.07981 -30.12966 -29.78499 -28.10157 -27.52126 -27.04690 -25.17153 -22.99193 -22.88710 -21.34826 -19.87961 -19.67622 -18.57937 -18.32664 -17.73381 -17.59075 -17.14093 -16.78416 -16.65428 -16.47058 -15.66339 -15.48940 -15.38788 -14.96655 -14.84937 -14.50625 -14.29312 -13.74536 -13.69708 -13.65188 -13.47078 -13.33606 -13.19116 -13.10958 -12.90035 -12.85861 -12.83926 -12.64200 -12.44994 -12.33958 -12.31664 -12.18482 -11.91595 -11.79016 -11.49771 -10.87198 -10.81377 -10.54264 -10.17955 -9.86067 -9.70563 -8.19451 -6.33351 -0.55604 1.38884 1.40234 1.47092 1.55788 1.76773 2.11960 2.39134 3.00342 3.07766 3.30037 3.41145 3.50144 3.56902 3.66393 3.82123 3.98923 4.14523 4.25660 4.31515 4.36848 4.43591 4.52044 4.53106 4.60489 4.61071 4.73976 4.77883 4.85555 4.86137 4.90246 4.92930 4.99626 5.04805 5.07959 5.23572 5.26979 5.32538 5.49135 5.60757 5.63949 5.72163 6.23507 6.36231 6.72355 7.06325 7.38853 8.87185 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.013727 B = 0.004488 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.252673 B = 6236.808276 C = 7152.873419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.994 5.994 3 C 0.127 3.873 4 H 0.086 0.914 5 C -0.128 4.128 6 C -0.132 4.132 7 C 0.508 3.492 8 O -0.599 6.599 9 N -0.602 5.602 10 C 0.073 3.927 11 C 0.108 3.892 12 S 2.618 3.382 13 O -0.986 6.986 14 O -0.990 6.990 15 C -0.550 4.550 16 C 0.010 3.990 17 C -0.534 4.534 18 H 0.047 0.953 19 C 0.046 3.954 20 N -0.890 5.890 21 Si 0.929 3.071 22 H -0.278 1.278 23 H -0.275 1.275 24 H -0.268 1.268 25 C -0.196 4.196 26 C -0.139 4.139 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.122 0.878 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.123 0.877 40 H 0.135 0.865 41 H 0.265 0.735 42 H 0.102 0.898 43 H 0.079 0.921 44 H 0.063 0.937 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.991 9.857 -3.902 16.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.831 5.831 3 C 0.020 3.980 4 H 0.104 0.896 5 C -0.167 4.167 6 C -0.172 4.172 7 C 0.298 3.702 8 O -0.481 6.481 9 N -0.334 5.334 10 C -0.070 4.070 11 C -0.016 4.016 12 S 2.716 3.284 13 O -0.976 6.976 14 O -0.980 6.980 15 C -0.683 4.683 16 C 0.008 3.992 17 C -0.572 4.572 18 H 0.065 0.935 19 C -0.157 4.157 20 N -0.526 5.526 21 Si 0.754 3.246 22 H -0.204 1.204 23 H -0.199 1.199 24 H -0.193 1.193 25 C -0.233 4.233 26 C -0.178 4.178 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.113 0.887 32 H 0.140 0.860 33 H 0.119 0.881 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.120 0.880 39 H 0.141 0.859 40 H 0.154 0.846 41 H 0.075 0.925 42 H 0.120 0.880 43 H 0.098 0.902 44 H 0.082 0.918 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.461 9.959 -4.542 16.586 hybrid contribution 1.412 -0.218 0.362 1.474 sum -11.049 9.741 -4.180 15.312 Atomic orbital electron populations 1.21813 0.76464 1.04905 1.03504 1.57458 1.16209 1.19329 1.90150 1.21134 0.96963 0.83762 0.96122 0.89570 1.22102 1.01347 0.95204 0.98073 1.21674 1.03495 0.98331 0.93675 1.20615 0.76070 0.86335 0.87139 1.90682 1.49695 1.20007 1.87727 1.47210 1.62496 1.15634 1.08060 1.21855 1.02794 0.96922 0.85380 1.21847 1.00837 0.80237 0.98666 1.04658 0.72524 0.72792 0.78384 1.93466 1.65452 1.63330 1.75341 1.93479 1.45844 1.83137 1.75588 1.29901 1.08578 1.07042 1.22765 1.18417 0.93112 0.85927 1.01773 1.20657 0.90376 1.46392 0.99749 0.93508 1.25443 1.01706 0.93944 0.94586 1.69993 1.31932 1.37750 1.12899 0.86063 0.80963 0.79174 0.78387 1.20373 1.19941 1.19342 1.23248 0.98536 1.00047 1.01511 1.22512 1.01344 1.03635 0.90318 0.91532 0.90483 0.87632 0.87777 0.88696 0.85968 0.88058 0.91106 0.91892 0.89198 0.90078 0.87966 0.85896 0.84649 0.92537 0.88019 0.90196 0.91802 0.89185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.25 9.09 127.77 1.16 2.41 16 2 N -0.99 -24.10 3.02 -516.05 -1.56 -25.66 16 3 C 0.13 2.90 2.52 45.08 0.11 3.01 16 4 H 0.09 2.49 6.88 -2.39 -0.02 2.47 16 5 C -0.13 -2.18 5.11 30.73 0.16 -2.02 16 6 C -0.13 -2.60 6.03 29.71 0.18 -2.42 16 7 C 0.51 12.92 7.46 87.75 0.65 13.57 16 8 O -0.60 -19.65 16.20 -3.02 -0.05 -19.70 16 9 N -0.60 -13.06 3.20 -852.00 -2.73 -15.79 16 10 C 0.07 1.35 10.21 127.77 1.30 2.65 16 11 C 0.11 2.07 5.83 86.49 0.50 2.58 16 12 S 2.62 95.80 5.10 -56.49 -0.29 95.51 16 13 O -0.99 -38.93 17.09 -127.65 -2.18 -41.11 16 14 O -0.99 -44.81 16.24 -127.65 -2.07 -46.88 16 15 C -0.55 -20.78 6.03 71.99 0.43 -20.34 16 16 C 0.01 0.46 1.32 -52.93 -0.07 0.39 16 17 C -0.53 -28.77 8.18 25.60 0.21 -28.56 16 18 H 0.05 2.63 7.83 -2.91 -0.02 2.61 16 19 C 0.05 2.49 5.38 84.65 0.46 2.94 16 20 N -0.89 -47.65 12.98 21.45 0.28 -47.37 16 21 Si 0.93 43.27 29.55 68.60 2.03 45.30 16 22 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 23 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 24 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 25 C -0.20 -8.01 9.96 30.62 0.30 -7.70 16 26 C -0.14 -5.94 9.49 30.62 0.29 -5.65 16 27 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.08 1.24 7.79 -2.39 -0.02 1.22 16 29 H 0.11 0.98 6.57 -2.39 -0.02 0.96 16 30 H 0.10 1.21 6.99 -2.39 -0.02 1.20 16 31 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.10 2.13 8.14 -2.38 -0.02 2.11 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.06 1.40 7.20 -2.39 -0.02 1.38 16 36 H 0.09 1.29 7.86 -2.39 -0.02 1.27 16 37 H 0.08 1.63 7.92 -2.39 -0.02 1.61 16 38 H 0.10 1.39 7.37 -2.39 -0.02 1.37 16 39 H 0.12 4.93 8.14 -2.39 -0.02 4.91 16 40 H 0.14 3.95 8.09 -2.39 -0.02 3.93 16 41 H 0.27 13.60 8.32 -92.71 -0.77 12.83 16 42 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 43 H 0.08 3.32 8.14 -2.38 -0.02 3.30 16 44 H 0.06 2.98 8.14 -2.39 -0.02 2.96 16 45 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 Total: -1.00 -73.89 375.54 0.10 -73.79 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 0.97 Total: 21.07 kcal Atomic # 6 Polarization: -44.85 SS G_CDS: 5.70 Total: -39.15 kcal Atomic # 7 Polarization: -84.81 SS G_CDS: -4.01 Total: -88.82 kcal Atomic # 8 Polarization: -103.39 SS G_CDS: -4.30 Total: -107.69 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: 95.80 SS G_CDS: -0.29 Total: 95.51 kcal Total: -73.89 0.10 -73.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601458082.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.202 kcal (2) G-P(sol) polarization free energy of solvation -73.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds