Wall clock time and date at job start Fri Apr 10 2020 14:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34144 * 118.70792 * 2 1 4 4 O 1.21223 * 119.35837 * 0.52480 * 3 2 1 5 5 C 1.50587 * 121.28139 * 180.54418 * 3 2 1 6 6 C 1.53242 * 109.16319 * 330.90778 * 5 3 2 7 7 C 1.53235 * 108.56841 * 55.61013 * 6 5 3 8 8 H 1.09009 * 109.52290 * 64.29597 * 7 6 5 9 9 N 1.46504 * 109.52458 * 184.47947 * 7 6 5 10 10 C 1.34771 * 120.00209 * 205.00309 * 9 7 6 11 11 O 1.21286 * 120.00091 * 0.02562 * 10 9 7 12 12 C 1.50702 * 120.00003 * 180.02562 * 10 9 7 13 13 C 1.50704 * 109.46988 * 180.02562 * 12 10 9 14 14 C 1.37640 * 120.12444 * 264.99234 * 13 12 10 15 15 C 1.38615 * 120.24657 * 179.97438 * 14 13 12 16 16 C 1.38661 * 120.49874 * 0.02562 * 15 14 13 17 17 C 1.37587 * 120.25014 * 0.02562 * 16 15 14 18 18 C 1.40696 * 120.12765 * 84.72301 * 13 12 10 19 19 C 1.41397 * 120.24645 * 359.97438 * 18 13 12 20 20 H 1.07998 * 119.99996 * 329.70350 * 19 18 13 21 21 C 1.39950 * 120.00014 * 149.69936 * 19 18 13 22 22 N 1.30820 * 119.99755 * 162.01562 * 21 19 18 23 23 Si 1.86794 * 119.99956 * 342.02025 * 21 19 18 24 24 H 1.48500 * 109.47246 * 95.39728 * 23 21 19 25 25 H 1.48502 * 109.47123 * 215.39898 * 23 21 19 26 26 H 1.48503 * 109.47324 * 335.39717 * 23 21 19 27 27 C 1.34141 * 118.70830 * 180.02562 * 2 1 3 28 28 O 1.21234 * 119.35933 * 359.45332 * 27 2 1 29 29 H 1.08997 * 109.47258 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.47018 * 120.00014 * 1 2 3 31 31 H 1.09003 * 109.47167 * 240.00013 * 1 2 3 32 32 H 1.09001 * 109.52301 * 211.00149 * 5 3 2 33 33 H 1.08996 * 109.52222 * 90.81194 * 5 3 2 34 34 H 1.09010 * 109.61795 * 295.88897 * 6 5 3 35 35 H 1.08998 * 109.62284 * 175.33854 * 6 5 3 36 36 H 0.97001 * 119.99433 * 25.00623 * 9 7 6 37 37 H 1.09002 * 109.46736 * 299.99460 * 12 10 9 38 38 H 1.08998 * 109.47393 * 59.99961 * 12 10 9 39 39 H 1.07997 * 119.87404 * 0.02562 * 14 13 12 40 40 H 1.07995 * 119.74695 * 180.02562 * 15 14 13 41 41 H 1.08000 * 119.86892 * 180.02562 * 16 15 14 42 42 H 1.08006 * 120.12533 * 179.97438 * 17 16 15 43 43 H 0.97003 * 119.99820 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1093 1.1766 0.0000 4 8 1.4682 2.2053 0.0097 5 6 3.6136 1.2442 -0.0122 6 6 4.1788 0.0000 0.6812 7 6 3.6136 -1.2442 -0.0122 8 1 3.9683 -1.2798 -1.0423 9 7 4.0555 -2.4453 0.7008 10 6 4.1328 -3.6240 0.0519 11 8 3.8369 -3.6903 -1.1224 12 6 4.5868 -4.8597 0.7855 13 6 4.5856 -6.0337 -0.1594 14 6 3.4946 -6.8707 -0.2198 15 6 3.4906 -7.9510 -1.0883 16 6 4.5830 -8.2016 -1.9048 17 6 5.6847 -7.3788 -1.8604 18 6 5.6973 -6.2750 -0.9873 19 6 6.8211 -5.4183 -0.9384 20 1 6.6944 -4.3751 -0.6893 21 6 8.0976 -5.9222 -1.2126 22 7 9.0728 -5.1041 -1.5146 23 14 8.4090 -7.7629 -1.1475 24 1 8.2865 -8.3343 -2.5127 25 1 9.7762 -8.0155 -0.6259 26 1 7.4116 -8.4023 -0.2520 27 6 2.1093 -1.1765 -0.0005 28 8 1.4681 -2.2054 0.0091 29 1 -0.3633 1.0276 -0.0005 30 1 -0.3633 -0.5138 -0.8899 31 1 -0.3634 -0.5138 0.8900 32 1 3.9424 2.1378 0.5183 33 1 3.9683 1.2798 -1.0423 34 1 3.8836 0.0000 1.7306 35 1 5.2660 0.0000 0.6041 36 1 4.2925 -2.3922 1.6399 37 1 5.5949 -4.7041 1.1698 38 1 3.9085 -5.0597 1.6149 39 1 2.6382 -6.6846 0.4113 40 1 2.6301 -8.6023 -1.1294 41 1 4.5688 -9.0460 -2.5780 42 1 6.5347 -7.5761 -2.4969 43 1 9.9575 -5.4534 -1.7051 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819728470.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:52:38 Heat of formation + Delta-G solvation = -82.078654 kcal Electronic energy + Delta-G solvation = -28262.657187 eV Core-core repulsion = 24272.693123 eV Total energy + Delta-G solvation = -3989.964064 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.87795 -39.56458 -38.70848 -37.57430 -35.97665 -35.17960 -33.56638 -32.93620 -31.77895 -30.29127 -28.39759 -27.83054 -26.51455 -24.79388 -23.52995 -23.17757 -21.39963 -20.70812 -19.52659 -18.75788 -17.66777 -17.45056 -17.31663 -16.90946 -16.43390 -15.87961 -15.43932 -15.23204 -14.81035 -14.61462 -14.45882 -14.31783 -13.71934 -13.44511 -13.39206 -13.26762 -12.96350 -12.75857 -12.64784 -12.52250 -12.32598 -12.08158 -11.86217 -11.49641 -11.39384 -11.15013 -10.78742 -10.70797 -10.53169 -10.44590 -10.22650 -9.90402 -9.68477 -9.54496 -9.29399 -9.10339 -8.95984 -7.55996 -7.47493 -6.92284 -4.45862 1.35004 2.26984 2.50244 2.63418 2.75625 3.14261 3.20844 3.25917 3.34352 3.38191 3.74612 4.00758 4.19994 4.31663 4.48180 4.55348 4.73600 5.03000 5.07647 5.16790 5.24272 5.28190 5.33684 5.46960 5.52986 5.57143 5.68153 5.89056 5.99546 6.13589 6.22727 6.29454 6.43508 6.60754 6.76011 6.79379 6.98379 7.21849 7.23759 7.45328 7.60696 7.69203 7.74409 7.80968 7.93657 8.17407 8.37551 8.70752 8.76443 8.84977 10.09881 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.018170 B = 0.003341 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.599199 B = 8378.254992 C = 9526.049367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.570 5.570 3 C 0.522 3.478 4 O -0.509 6.509 5 C -0.138 4.138 6 C -0.131 4.131 7 C 0.132 3.868 8 H 0.130 0.870 9 N -0.727 5.727 10 C 0.525 3.475 11 O -0.507 6.507 12 C -0.071 4.071 13 C -0.167 4.167 14 C -0.067 4.067 15 C -0.241 4.241 16 C -0.080 4.080 17 C -0.234 4.234 18 C 0.110 3.890 19 C -0.445 4.445 20 H 0.089 0.911 21 C 0.086 3.914 22 N -0.811 5.811 23 Si 0.908 3.092 24 H -0.272 1.272 25 H -0.293 1.293 26 H -0.244 1.244 27 C 0.500 3.500 28 O -0.469 6.469 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.083 0.917 35 H 0.107 0.893 36 H 0.402 0.598 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.892 10.842 7.276 14.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.314 5.314 3 C 0.313 3.687 4 O -0.383 6.383 5 C -0.178 4.178 6 C -0.169 4.169 7 C 0.023 3.977 8 H 0.148 0.852 9 N -0.383 5.383 10 C 0.312 3.688 11 O -0.379 6.379 12 C -0.110 4.110 13 C -0.169 4.169 14 C -0.085 4.085 15 C -0.260 4.260 16 C -0.098 4.098 17 C -0.253 4.253 18 C 0.107 3.893 19 C -0.474 4.474 20 H 0.107 0.893 21 C -0.133 4.133 22 N -0.436 5.436 23 Si 0.735 3.265 24 H -0.198 1.198 25 H -0.220 1.220 26 H -0.167 1.167 27 C 0.287 3.713 28 O -0.338 6.338 29 H 0.115 0.885 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.138 0.862 33 H 0.135 0.865 34 H 0.102 0.898 35 H 0.125 0.875 36 H 0.237 0.763 37 H 0.120 0.880 38 H 0.098 0.902 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.117 0.883 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.503 10.811 6.345 14.609 hybrid contribution 0.231 -0.685 0.219 0.755 sum -7.272 10.126 6.564 14.089 Atomic orbital electron populations 1.21925 0.77834 1.04665 1.03641 1.46627 1.10044 1.07796 1.66943 1.21043 0.91532 0.82495 0.73653 1.90720 1.68717 1.33116 1.45744 1.21906 0.89557 1.00995 1.05360 1.22035 1.03602 0.90926 1.00321 1.20851 0.88200 0.87220 1.01457 0.85226 1.45881 1.70666 1.07353 1.14351 1.21186 0.75873 0.83832 0.87866 1.90700 1.46160 1.84829 1.16177 1.20269 1.02794 0.90580 0.97396 1.19052 0.97462 0.98345 1.02044 1.20456 0.95718 0.94836 0.97496 1.20344 0.99279 1.02019 1.04366 1.20601 0.94091 0.97619 0.97532 1.20999 0.98999 1.00998 1.04280 1.17479 0.92512 0.90679 0.88603 1.19386 0.89743 0.97691 1.40583 0.89317 1.26128 0.95959 1.00606 0.90565 1.69698 1.03075 1.38093 1.32713 0.86361 0.77211 0.82821 0.80078 1.19802 1.22029 1.16684 1.21799 0.92077 0.82483 0.74948 1.90775 1.68043 1.32836 1.42121 0.88515 0.90678 0.90774 0.86220 0.86544 0.89831 0.87462 0.76292 0.87981 0.90164 0.89046 0.89012 0.89020 0.88332 0.90632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.63 9.81 59.85 0.59 1.22 16 2 N -0.57 -6.49 2.93 -123.17 -0.36 -6.85 16 3 C 0.52 5.31 7.48 -11.32 -0.08 5.23 16 4 O -0.51 -6.48 16.19 5.61 0.09 -6.39 16 5 C -0.14 -0.89 6.07 -27.81 -0.17 -1.06 16 6 C -0.13 -0.88 5.56 -26.48 -0.15 -1.03 16 7 C 0.13 1.55 2.70 -69.01 -0.19 1.36 16 8 H 0.13 1.70 7.58 -51.92 -0.39 1.31 16 9 N -0.73 -9.70 4.88 -54.86 -0.27 -9.96 16 10 C 0.52 9.85 6.85 -10.99 -0.08 9.78 16 11 O -0.51 -11.94 15.61 5.55 0.09 -11.85 16 12 C -0.07 -1.31 5.19 -29.03 -0.15 -1.46 16 13 C -0.17 -3.84 4.43 -103.91 -0.46 -4.30 16 14 C -0.07 -1.47 9.66 -39.66 -0.38 -1.85 16 15 C -0.24 -5.28 10.05 -39.29 -0.39 -5.68 16 16 C -0.08 -1.83 10.02 -39.66 -0.40 -2.22 16 17 C -0.23 -5.83 7.17 -38.88 -0.28 -6.11 16 18 C 0.11 2.80 5.10 -106.82 -0.54 2.25 16 19 C -0.45 -11.67 8.55 -37.74 -0.32 -12.00 16 20 H 0.09 2.40 6.99 -52.49 -0.37 2.03 16 21 C 0.09 2.20 5.41 -17.34 -0.09 2.11 16 22 N -0.81 -21.11 13.93 55.55 0.77 -20.34 16 23 Si 0.91 20.62 24.52 -169.99 -4.17 16.45 16 24 H -0.27 -6.11 6.71 56.52 0.38 -5.73 16 25 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.24 -5.65 6.86 56.52 0.39 -5.26 16 27 C 0.50 6.73 7.29 -11.32 -0.08 6.64 16 28 O -0.47 -8.26 15.95 5.60 0.09 -8.17 16 29 H 0.10 0.93 6.73 -51.93 -0.35 0.58 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.12 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.12 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 35 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.40 3.91 8.61 -40.82 -0.35 3.56 16 37 H 0.10 1.83 7.15 -51.93 -0.37 1.45 16 38 H 0.08 1.24 8.05 -51.93 -0.42 0.82 16 39 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 40 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 42 H 0.10 2.45 4.74 -52.48 -0.25 2.20 16 43 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 LS Contribution 357.20 15.07 5.38 5.38 Total: -1.00 -35.10 357.20 -7.03 -42.13 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -5.48 Total: 6.72 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -3.18 Total: -7.13 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.15 Total: -37.15 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: 0.27 Total: -26.42 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.17 Total: 16.45 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.10 -7.03 -42.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819728470.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.944 kcal (2) G-P(sol) polarization free energy of solvation -35.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds