Wall clock time and date at job start Fri Apr 10 2020 14:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46489 * 1 3 3 C 1.33810 * 122.74005 * 2 1 4 4 O 1.21221 * 125.31198 * 359.97438 * 3 2 1 5 5 C 1.51218 * 109.38255 * 180.02562 * 3 2 1 6 6 H 1.09000 * 113.20729 * 122.41497 * 5 3 2 7 7 C 1.54286 * 109.20872 * 248.78147 * 5 3 2 8 8 N 1.48526 * 104.71056 * 134.18388 * 7 5 3 9 9 C 1.46900 * 110.99830 * 200.72780 * 8 7 5 10 10 C 1.50704 * 109.47018 * 285.39953 * 9 8 7 11 11 C 1.38305 * 119.92559 * 269.72094 * 10 9 8 12 12 C 1.38097 * 120.06358 * 180.27728 * 11 10 9 13 13 C 1.38880 * 119.93379 * 0.02562 * 12 11 10 14 14 O 1.35756 * 120.06667 * 180.02562 * 13 12 11 15 15 C 1.34823 * 116.99547 * 174.44489 * 14 13 12 16 16 H 1.07999 * 120.00661 * 5.04963 * 15 14 13 17 17 C 1.38655 * 119.99715 * 185.05591 * 15 14 13 18 18 N 1.31553 * 119.99953 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00074 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47268 * 89.99729 * 19 17 15 21 21 H 1.48499 * 109.47149 * 209.99829 * 19 17 15 22 22 H 1.48503 * 109.46861 * 329.99744 * 19 17 15 23 23 C 1.38872 * 119.86276 * 359.97438 * 13 12 11 24 24 C 1.38101 * 119.92860 * 0.02562 * 23 13 12 25 25 C 1.48518 * 104.20218 * 320.27389 * 8 7 5 26 26 C 1.54276 * 104.71406 * 39.72741 * 25 8 7 27 27 H 1.09002 * 112.64745 * 99.12370 * 26 25 8 28 28 C 1.35318 * 122.52162 * 180.31430 * 2 1 3 29 29 O 1.21227 * 126.12804 * 0.07388 * 28 2 1 30 30 H 1.08999 * 109.47735 * 89.99740 * 1 2 3 31 31 H 1.08998 * 109.47199 * 209.99795 * 1 2 3 32 32 H 1.09008 * 109.47508 * 329.99970 * 1 2 3 33 33 H 1.08999 * 110.39001 * 15.37513 * 7 5 3 34 34 H 1.08999 * 110.38910 * 252.98645 * 7 5 3 35 35 H 1.08997 * 109.47153 * 165.39814 * 9 8 7 36 36 H 1.08998 * 109.47261 * 45.39596 * 9 8 7 37 37 H 1.07995 * 119.96588 * 0.28258 * 11 10 9 38 38 H 1.08005 * 120.02897 * 180.02562 * 12 11 10 39 39 H 0.97006 * 120.00126 * 180.02562 * 18 17 15 40 40 H 1.07999 * 120.03817 * 179.97438 * 23 13 12 41 41 H 1.08002 * 119.96311 * 179.97438 * 24 23 13 42 42 H 1.09001 * 110.38299 * 158.53505 * 25 8 7 43 43 H 1.09001 * 110.38940 * 280.91471 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1886 1.1255 0.0000 4 8 1.7355 2.2499 -0.0004 5 6 3.6598 0.7762 -0.0006 6 1 4.2015 1.1996 -0.8464 7 6 4.2761 1.1716 1.3574 8 7 5.0972 -0.0005 1.7546 9 6 5.3488 -0.0009 3.2019 10 6 6.3769 1.0499 3.5334 11 6 7.7207 0.7230 3.5388 12 6 8.6649 1.6823 3.8477 13 6 8.2637 2.9762 4.1537 14 8 9.1896 3.9215 4.4572 15 6 8.7433 5.1817 4.6313 16 1 7.6832 5.3872 4.6087 17 6 9.6452 6.2141 4.8392 18 7 10.9364 5.9638 4.8672 19 14 9.0269 7.9603 5.0796 20 1 8.7913 8.2075 6.5248 21 1 10.0414 8.9189 4.5725 22 1 7.7564 8.1428 4.3327 23 6 6.9136 3.3013 4.1474 24 6 5.9743 2.3375 3.8376 25 6 4.2761 -1.1723 1.3567 26 6 3.6599 -0.7762 -0.0010 27 1 4.2015 -1.1991 -0.8471 28 6 2.1924 -1.1410 -0.0063 29 8 1.7510 -2.2700 -0.0137 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5139 33 1 3.4915 1.3522 2.0922 34 1 4.9044 2.0553 1.2464 35 1 5.7188 -0.9800 3.5061 36 1 4.4217 0.2179 3.7319 37 1 8.0319 -0.2835 3.3011 38 1 9.7142 1.4264 3.8513 39 1 11.5674 6.6860 5.0130 40 1 6.5985 4.3065 4.3853 41 1 4.9241 2.5897 3.8330 42 1 4.9045 -2.0560 1.2453 43 1 3.4916 -1.3534 2.0915 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879532367.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:53:39 Heat of formation + Delta-G solvation = -45.083271 kcal Electronic energy + Delta-G solvation = -27519.717282 eV Core-core repulsion = 23531.357459 eV Total energy + Delta-G solvation = -3988.359823 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.55949 -39.27293 -39.01837 -38.39446 -36.57820 -35.99394 -33.33386 -32.24448 -30.26922 -29.90725 -29.63796 -27.63646 -25.65773 -24.90009 -24.56669 -22.07655 -21.76041 -21.54531 -20.50974 -19.87570 -17.99629 -17.85844 -16.98685 -16.97183 -16.69751 -15.98120 -15.64032 -15.31100 -14.93230 -14.70603 -14.51528 -14.31484 -14.10339 -13.81738 -13.57757 -13.54099 -13.42883 -13.03263 -12.95447 -12.69938 -12.54976 -12.12848 -12.05455 -11.79705 -11.67778 -11.38761 -11.27247 -11.00856 -10.74847 -10.66439 -10.62580 -10.43773 -10.34692 -10.20679 -9.34893 -8.86895 -8.71138 -8.19005 -7.20843 -6.46602 -4.05400 1.05659 2.01638 2.19219 2.22019 2.28872 3.11702 3.13233 3.17904 3.47763 3.59098 3.81122 3.95369 4.00674 4.15559 4.61733 4.66231 4.70051 4.81626 4.85175 4.88367 5.00875 5.07462 5.12654 5.17950 5.19554 5.27807 5.33401 5.44285 5.50415 5.64600 5.69518 5.74516 5.84477 6.19224 6.30508 6.36629 6.52302 6.67313 6.75149 6.84059 6.89597 7.04885 7.24214 7.32965 7.35789 7.42721 7.80665 7.98362 8.99143 9.68949 10.71307 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.019298 B = 0.002536 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.559173 B =11040.364856 C =12124.888414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.582 5.582 3 C 0.533 3.467 4 O -0.473 6.473 5 C -0.123 4.123 6 H 0.143 0.857 7 C 0.052 3.948 8 N -0.495 5.495 9 C 0.103 3.897 10 C -0.182 4.182 11 C -0.051 4.051 12 C -0.194 4.194 13 C 0.157 3.843 14 O -0.177 6.177 15 C -0.392 4.392 16 H 0.092 0.908 17 C 0.040 3.960 18 N -0.862 5.862 19 Si 0.940 3.060 20 H -0.273 1.273 21 H -0.277 1.277 22 H -0.267 1.267 23 C -0.234 4.234 24 C -0.064 4.064 25 C 0.047 3.953 26 C -0.124 4.124 27 H 0.141 0.859 28 C 0.536 3.464 29 O -0.473 6.473 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.049 0.951 34 H 0.107 0.893 35 H 0.080 0.920 36 H 0.038 0.962 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.270 0.730 40 H 0.126 0.874 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.777 -13.167 -9.104 23.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.326 5.326 3 C 0.321 3.679 4 O -0.344 6.344 5 C -0.145 4.145 6 H 0.160 0.840 7 C -0.077 4.077 8 N -0.219 5.219 9 C -0.024 4.024 10 C -0.183 4.183 11 C -0.070 4.070 12 C -0.213 4.213 13 C 0.103 3.897 14 O -0.080 6.080 15 C -0.468 4.468 16 H 0.109 0.891 17 C -0.165 4.165 18 N -0.497 5.497 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.202 1.202 22 H -0.192 1.192 23 C -0.253 4.253 24 C -0.083 4.083 25 C -0.082 4.082 26 C -0.146 4.146 27 H 0.159 0.841 28 C 0.324 3.676 29 O -0.343 6.343 30 H 0.091 0.909 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.067 0.933 34 H 0.125 0.875 35 H 0.098 0.902 36 H 0.056 0.944 37 H 0.130 0.870 38 H 0.134 0.866 39 H 0.080 0.920 40 H 0.144 0.856 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -16.315 -13.042 -9.266 22.851 hybrid contribution -1.320 0.976 0.495 1.714 sum -17.635 -12.066 -8.771 23.098 Atomic orbital electron populations 1.21946 0.77140 1.04703 1.03717 1.47006 1.09655 1.09236 1.66746 1.20710 0.89783 0.83679 0.73742 1.90794 1.77575 1.21140 1.44861 1.22946 0.92848 0.95329 1.03337 0.83975 1.23000 0.96093 0.96663 0.91901 1.65621 1.39020 1.00293 1.16924 1.20993 0.96856 0.98825 0.85698 1.18944 0.93595 0.94348 1.11443 1.20435 0.91782 0.97750 0.97001 1.20216 0.99534 0.91697 1.09903 1.19409 0.88808 0.89989 0.91528 1.83979 1.32283 1.16666 1.75087 1.21322 0.93790 0.80676 1.51018 0.89067 1.25286 0.94902 0.99648 0.96641 1.70036 1.00978 1.33311 1.45355 0.85724 0.78613 0.80320 0.78861 1.19895 1.20229 1.19155 1.21112 0.92793 1.00571 1.10833 1.20568 0.97738 0.92432 0.97518 1.22979 0.96374 0.96447 0.92372 1.22924 0.92841 0.95900 1.02953 0.84084 1.21100 0.89653 0.83607 0.73201 1.90774 1.78266 1.20366 1.44860 0.90878 0.89535 0.89397 0.93251 0.87483 0.90171 0.94377 0.87029 0.86551 0.91997 0.85649 0.88078 0.88004 0.93353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.46 10.59 59.84 0.63 1.09 16 2 N -0.58 -5.18 2.99 -122.44 -0.37 -5.55 16 3 C 0.53 5.35 7.07 -11.16 -0.08 5.27 16 4 O -0.47 -6.20 17.47 5.61 0.10 -6.10 16 5 C -0.12 -1.04 4.17 -89.66 -0.37 -1.41 16 6 H 0.14 0.98 8.14 -51.93 -0.42 0.56 16 7 C 0.05 0.55 5.25 -2.25 -0.01 0.53 16 8 N -0.49 -5.30 5.33 -231.60 -1.23 -6.53 16 9 C 0.10 1.23 4.98 -4.97 -0.02 1.20 16 10 C -0.18 -2.85 5.20 -104.57 -0.54 -3.39 16 11 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 12 C -0.19 -3.96 9.99 -39.40 -0.39 -4.35 16 13 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 14 O -0.18 -4.98 9.76 0.05 0.00 -4.98 16 15 C -0.39 -10.81 9.49 30.89 0.29 -10.52 16 16 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 17 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 18 N -0.86 -25.07 13.67 55.48 0.76 -24.32 16 19 Si 0.94 20.36 29.55 -169.99 -5.02 15.33 16 20 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 21 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 23 C -0.23 -4.91 9.17 -39.40 -0.36 -5.27 16 24 C -0.06 -1.10 8.91 -39.61 -0.35 -1.45 16 25 C 0.05 0.39 6.00 -2.26 -0.01 0.38 16 26 C -0.12 -0.93 4.13 -89.67 -0.37 -1.30 16 27 H 0.14 0.77 8.14 -51.93 -0.42 0.35 16 28 C 0.54 4.87 7.14 -10.49 -0.07 4.80 16 29 O -0.47 -5.44 17.56 5.60 0.10 -5.34 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.55 7.87 -51.93 -0.41 0.14 16 32 H 0.09 0.59 7.82 -51.92 -0.41 0.19 16 33 H 0.05 0.54 7.33 -51.93 -0.38 0.16 16 34 H 0.11 1.29 7.87 -51.93 -0.41 0.88 16 35 H 0.08 0.85 8.02 -51.93 -0.42 0.44 16 36 H 0.04 0.44 7.71 -51.93 -0.40 0.03 16 37 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 38 H 0.12 2.31 8.06 -52.48 -0.42 1.89 16 39 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 40 H 0.13 2.67 5.64 -52.49 -0.30 2.37 16 41 H 0.10 1.51 8.06 -52.49 -0.42 1.09 16 42 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.05 0.42 7.58 -51.93 -0.39 0.02 16 LS Contribution 361.67 15.07 5.45 5.45 Total: -1.00 -32.69 361.67 -8.11 -40.79 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -5.48 Total: 2.50 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -2.41 Total: -11.26 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: -0.84 Total: -36.39 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: 0.20 Total: -16.43 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.69 -8.11 -40.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879532367.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.290 kcal (2) G-P(sol) polarization free energy of solvation -32.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds