Wall clock time and date at job start Fri Apr 10 2020 14:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46489 * 1 3 3 C 1.33810 * 122.74005 * 2 1 4 4 O 1.21221 * 125.31198 * 359.97438 * 3 2 1 5 5 C 1.51218 * 109.38255 * 180.02562 * 3 2 1 6 6 H 1.09000 * 113.20729 * 122.41497 * 5 3 2 7 7 C 1.54286 * 109.20872 * 248.78147 * 5 3 2 8 8 N 1.48526 * 104.71056 * 134.18388 * 7 5 3 9 9 C 1.46900 * 110.99830 * 200.72780 * 8 7 5 10 10 C 1.50704 * 109.47018 * 285.39953 * 9 8 7 11 11 C 1.38305 * 119.92559 * 269.72094 * 10 9 8 12 12 C 1.38097 * 120.06358 * 180.27728 * 11 10 9 13 13 C 1.38880 * 119.93379 * 0.02562 * 12 11 10 14 14 O 1.35756 * 120.06667 * 180.02562 * 13 12 11 15 15 C 1.34823 * 116.99547 * 174.44489 * 14 13 12 16 16 H 1.07999 * 120.00661 * 5.04963 * 15 14 13 17 17 C 1.38655 * 119.99715 * 185.05591 * 15 14 13 18 18 N 1.31553 * 119.99953 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00074 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47268 * 89.99729 * 19 17 15 21 21 H 1.48499 * 109.47149 * 209.99829 * 19 17 15 22 22 H 1.48503 * 109.46861 * 329.99744 * 19 17 15 23 23 C 1.38872 * 119.86276 * 359.97438 * 13 12 11 24 24 C 1.38101 * 119.92860 * 0.02562 * 23 13 12 25 25 C 1.48518 * 104.20218 * 320.27389 * 8 7 5 26 26 C 1.54276 * 104.71406 * 39.72741 * 25 8 7 27 27 H 1.09002 * 112.64745 * 99.12370 * 26 25 8 28 28 C 1.35318 * 122.52162 * 180.31430 * 2 1 3 29 29 O 1.21227 * 126.12804 * 0.07388 * 28 2 1 30 30 H 1.08999 * 109.47735 * 89.99740 * 1 2 3 31 31 H 1.08998 * 109.47199 * 209.99795 * 1 2 3 32 32 H 1.09008 * 109.47508 * 329.99970 * 1 2 3 33 33 H 1.08999 * 110.39001 * 15.37513 * 7 5 3 34 34 H 1.08999 * 110.38910 * 252.98645 * 7 5 3 35 35 H 1.08997 * 109.47153 * 165.39814 * 9 8 7 36 36 H 1.08998 * 109.47261 * 45.39596 * 9 8 7 37 37 H 1.07995 * 119.96588 * 0.28258 * 11 10 9 38 38 H 1.08005 * 120.02897 * 180.02562 * 12 11 10 39 39 H 0.97006 * 120.00126 * 180.02562 * 18 17 15 40 40 H 1.07999 * 120.03817 * 179.97438 * 23 13 12 41 41 H 1.08002 * 119.96311 * 179.97438 * 24 23 13 42 42 H 1.09001 * 110.38299 * 158.53505 * 25 8 7 43 43 H 1.09001 * 110.38940 * 280.91471 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1886 1.1255 0.0000 4 8 1.7355 2.2499 -0.0004 5 6 3.6598 0.7762 -0.0006 6 1 4.2015 1.1996 -0.8464 7 6 4.2761 1.1716 1.3574 8 7 5.0972 -0.0005 1.7546 9 6 5.3488 -0.0009 3.2019 10 6 6.3769 1.0499 3.5334 11 6 7.7207 0.7230 3.5388 12 6 8.6649 1.6823 3.8477 13 6 8.2637 2.9762 4.1537 14 8 9.1896 3.9215 4.4572 15 6 8.7433 5.1817 4.6313 16 1 7.6832 5.3872 4.6087 17 6 9.6452 6.2141 4.8392 18 7 10.9364 5.9638 4.8672 19 14 9.0269 7.9603 5.0796 20 1 8.7913 8.2075 6.5248 21 1 10.0414 8.9189 4.5725 22 1 7.7564 8.1428 4.3327 23 6 6.9136 3.3013 4.1474 24 6 5.9743 2.3375 3.8376 25 6 4.2761 -1.1723 1.3567 26 6 3.6599 -0.7762 -0.0010 27 1 4.2015 -1.1991 -0.8471 28 6 2.1924 -1.1410 -0.0063 29 8 1.7510 -2.2700 -0.0137 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5139 33 1 3.4915 1.3522 2.0922 34 1 4.9044 2.0553 1.2464 35 1 5.7188 -0.9800 3.5061 36 1 4.4217 0.2179 3.7319 37 1 8.0319 -0.2835 3.3011 38 1 9.7142 1.4264 3.8513 39 1 11.5674 6.6860 5.0130 40 1 6.5985 4.3065 4.3853 41 1 4.9241 2.5897 3.8330 42 1 4.9045 -2.0560 1.2453 43 1 3.4916 -1.3534 2.0915 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879532367.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:53:38 Heat of formation + Delta-G solvation = -68.016288 kcal Electronic energy + Delta-G solvation = -27520.711733 eV Core-core repulsion = 23531.357459 eV Total energy + Delta-G solvation = -3989.354274 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.29566 -40.80022 -39.83755 -39.47884 -38.06127 -36.84138 -34.51367 -33.93385 -31.77090 -31.10267 -30.44439 -28.51214 -27.42038 -25.84645 -25.59951 -23.59518 -22.76773 -22.30516 -21.75711 -20.70516 -19.79909 -18.78575 -18.57710 -17.71431 -17.48141 -16.79590 -16.63608 -16.42194 -16.19509 -16.08637 -15.76522 -15.47773 -15.33114 -15.16611 -14.80343 -14.64872 -14.41662 -14.22145 -13.95315 -13.82450 -13.58148 -13.52448 -13.03813 -12.96977 -12.72752 -12.56497 -12.39104 -12.36094 -12.15512 -12.12875 -11.89429 -11.71835 -11.14047 -11.12399 -10.93524 -10.77846 -9.73099 -9.57005 -8.87195 -8.45714 -6.13379 0.29908 0.65134 0.70950 1.35464 1.36069 1.44325 1.51065 1.52605 2.18547 2.72148 2.80404 2.92249 3.12350 3.14370 3.40158 3.47827 3.57030 3.92377 4.05308 4.08682 4.14611 4.17118 4.21158 4.26174 4.32955 4.36067 4.41623 4.60138 4.65375 4.66977 4.70314 4.81306 4.82319 4.88656 4.90878 5.12681 5.17393 5.34317 5.55738 5.61999 5.69169 5.75610 5.86535 5.92606 6.05510 6.10814 6.28031 6.59527 6.99482 7.81372 8.77577 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.019298 B = 0.002536 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.559173 B =11040.364856 C =12124.888414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.583 5.583 3 C 0.536 3.464 4 O -0.509 6.509 5 C -0.116 4.116 6 H 0.160 0.840 7 C 0.049 3.951 8 N -0.500 5.500 9 C 0.104 3.896 10 C -0.151 4.151 11 C -0.043 4.043 12 C -0.205 4.205 13 C 0.114 3.886 14 O -0.233 6.233 15 C -0.411 4.411 16 H 0.100 0.900 17 C -0.023 4.023 18 N -0.921 5.921 19 Si 1.016 2.984 20 H -0.264 1.264 21 H -0.271 1.271 22 H -0.254 1.254 23 C -0.244 4.244 24 C -0.062 4.062 25 C 0.049 3.951 26 C -0.113 4.113 27 H 0.170 0.830 28 C 0.541 3.459 29 O -0.495 6.495 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.050 0.950 37 H 0.151 0.849 38 H 0.112 0.888 39 H 0.272 0.728 40 H 0.113 0.887 41 H 0.129 0.871 42 H 0.121 0.879 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.195 -15.381 -10.217 26.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.326 5.326 3 C 0.325 3.675 4 O -0.382 6.382 5 C -0.137 4.137 6 H 0.178 0.822 7 C -0.080 4.080 8 N -0.224 5.224 9 C -0.023 4.023 10 C -0.152 4.152 11 C -0.061 4.061 12 C -0.224 4.224 13 C 0.063 3.937 14 O -0.140 6.140 15 C -0.488 4.488 16 H 0.117 0.883 17 C -0.220 4.220 18 N -0.559 5.559 19 Si 0.835 3.165 20 H -0.188 1.188 21 H -0.196 1.196 22 H -0.178 1.178 23 C -0.263 4.263 24 C -0.080 4.080 25 C -0.079 4.079 26 C -0.134 4.134 27 H 0.187 0.813 28 C 0.331 3.669 29 O -0.367 6.367 30 H 0.103 0.897 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.064 0.936 34 H 0.107 0.893 35 H 0.123 0.877 36 H 0.068 0.932 37 H 0.169 0.831 38 H 0.130 0.870 39 H 0.081 0.919 40 H 0.131 0.869 41 H 0.146 0.854 42 H 0.139 0.861 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -18.784 -15.321 -10.393 26.374 hybrid contribution -0.818 1.304 0.739 1.708 sum -19.603 -14.017 -9.654 25.960 Atomic orbital electron populations 1.22103 0.76277 1.05032 1.04668 1.47090 1.10455 1.09019 1.66056 1.20926 0.90510 0.83281 0.72756 1.90783 1.78275 1.22510 1.46625 1.22944 0.91661 0.96226 1.02888 0.82222 1.22950 0.95744 0.96225 0.93053 1.65526 1.39951 1.01210 1.15729 1.21021 0.96060 0.98348 0.86897 1.19475 0.94314 0.94513 1.06913 1.20859 0.91518 0.98542 0.95183 1.20489 1.00469 0.91401 1.10070 1.19968 0.89560 0.90541 0.93593 1.83940 1.34249 1.17430 1.78398 1.21779 0.94452 0.81334 1.51201 0.88291 1.26543 0.94981 1.04266 0.96211 1.70180 1.02541 1.34823 1.48369 0.84623 0.78429 0.74145 0.79255 1.18848 1.19572 1.17788 1.21184 0.92605 1.01117 1.11397 1.20869 0.98369 0.92386 0.96410 1.23047 0.96450 0.95866 0.92534 1.22989 0.91840 0.94843 1.03726 0.81305 1.21299 0.90242 0.83081 0.72301 1.90776 1.78771 1.21182 1.45998 0.89713 0.88832 0.89449 0.93617 0.89255 0.87699 0.93201 0.83140 0.87001 0.91880 0.86888 0.85354 0.86057 0.93250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.72 10.59 127.77 1.35 2.08 16 2 N -0.58 -8.97 2.99 -778.33 -2.32 -11.30 16 3 C 0.54 9.62 7.07 87.97 0.62 10.24 16 4 O -0.51 -12.75 17.47 -2.85 -0.05 -12.80 16 5 C -0.12 -1.59 4.17 -10.17 -0.04 -1.63 16 6 H 0.16 1.67 8.14 -2.39 -0.02 1.65 16 7 C 0.05 0.88 5.25 86.42 0.45 1.33 16 8 N -0.50 -8.50 5.33 -886.66 -4.72 -13.22 16 9 C 0.10 1.97 4.98 85.56 0.43 2.39 16 10 C -0.15 -4.23 5.20 -19.83 -0.10 -4.34 16 11 C -0.04 -1.32 9.69 22.25 0.22 -1.10 16 12 C -0.21 -8.43 9.99 22.39 0.22 -8.20 16 13 C 0.11 5.58 6.65 22.58 0.15 5.73 16 14 O -0.23 -14.03 9.76 -22.73 -0.22 -14.26 16 15 C -0.41 -24.02 9.49 67.92 0.64 -23.38 16 16 H 0.10 5.33 5.20 -2.91 -0.02 5.31 16 17 C -0.02 -1.29 5.49 84.83 0.47 -0.82 16 18 N -0.92 -56.67 13.67 21.61 0.30 -56.38 16 19 Si 1.02 43.10 29.55 68.60 2.03 45.13 16 20 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 21 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 22 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 23 C -0.24 -10.42 9.17 22.39 0.21 -10.22 16 24 C -0.06 -2.02 8.91 22.25 0.20 -1.82 16 25 C 0.05 0.58 6.00 86.42 0.52 1.10 16 26 C -0.11 -1.21 4.13 -10.18 -0.04 -1.26 16 27 H 0.17 0.97 8.14 -2.39 -0.02 0.95 16 28 C 0.54 8.11 7.14 87.74 0.63 8.73 16 29 O -0.50 -9.97 17.56 -2.86 -0.05 -10.02 16 30 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.09 1.00 7.87 -2.39 -0.02 0.98 16 32 H 0.09 1.07 7.82 -2.38 -0.02 1.05 16 33 H 0.05 0.87 7.33 -2.39 -0.02 0.85 16 34 H 0.09 1.96 7.87 -2.39 -0.02 1.94 16 35 H 0.10 1.59 8.02 -2.39 -0.02 1.57 16 36 H 0.05 0.89 7.71 -2.39 -0.02 0.87 16 37 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 38 H 0.11 4.59 8.06 -2.91 -0.02 4.56 16 39 H 0.27 15.34 8.31 -92.70 -0.77 14.56 16 40 H 0.11 5.02 5.64 -2.91 -0.02 5.00 16 41 H 0.13 3.50 8.06 -2.91 -0.02 3.47 16 42 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.05 0.62 7.58 -2.39 -0.02 0.60 16 Total: -1.00 -76.78 361.67 1.91 -74.87 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: 1.04 Total: 19.13 kcal Atomic # 6 Polarization: -27.07 SS G_CDS: 5.92 Total: -21.16 kcal Atomic # 7 Polarization: -74.14 SS G_CDS: -6.75 Total: -80.89 kcal Atomic # 8 Polarization: -36.76 SS G_CDS: -0.32 Total: -37.08 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -76.78 1.91 -74.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879532367.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.850 kcal (2) G-P(sol) polarization free energy of solvation -76.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds