Wall clock time and date at job start Fri Apr 10 2020 14:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34777 * 120.00220 * 2 1 4 4 O 1.21287 * 119.99928 * 180.02562 * 3 2 1 5 5 C 1.50693 * 119.99946 * 0.27692 * 3 2 1 6 6 C 1.53049 * 113.15575 * 280.09730 * 5 3 2 7 7 S 1.81418 * 89.89213 * 211.85379 * 6 5 3 8 8 O 1.42102 * 112.75748 * 280.47251 * 7 6 5 9 9 O 1.42104 * 112.75548 * 136.72769 * 7 6 5 10 10 C 1.53043 * 113.15149 * 179.72414 * 5 3 2 11 11 C 1.46500 * 119.99807 * 180.02562 * 2 1 3 12 12 C 1.53008 * 109.46988 * 120.79804 * 11 2 1 13 13 C 1.53000 * 109.47070 * 300.00015 * 12 11 2 14 14 C 1.53007 * 109.47054 * 300.00226 * 13 12 11 15 15 N 1.46505 * 109.46862 * 180.02562 * 14 13 12 16 16 C 1.36936 * 120.00320 * 84.99870 * 15 14 13 17 17 H 1.07995 * 119.99784 * 359.97438 * 16 15 14 18 18 C 1.38813 * 119.99727 * 179.97438 * 16 15 14 19 19 N 1.31610 * 120.00415 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99585 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47265 * 59.99818 * 20 18 16 22 22 H 1.48499 * 109.46973 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46856 * 300.00017 * 20 18 16 24 24 C 1.53000 * 109.47148 * 60.00012 * 14 13 12 25 25 C 1.52999 * 109.47084 * 0.79867 * 11 2 1 26 26 H 1.08998 * 109.47510 * 84.07316 * 1 2 3 27 27 H 1.08996 * 109.47359 * 204.08178 * 1 2 3 28 28 H 1.09001 * 109.46464 * 324.07716 * 1 2 3 29 29 H 1.08998 * 112.50024 * 49.94019 * 5 3 2 30 30 H 1.09000 * 113.14388 * 327.11732 * 6 5 3 31 31 H 1.08999 * 113.14481 * 96.59379 * 6 5 3 32 32 H 1.09003 * 113.14932 * 263.40660 * 10 5 3 33 33 H 1.09004 * 113.14875 * 32.89204 * 10 5 3 34 34 H 1.08994 * 109.47708 * 240.79558 * 11 2 1 35 35 H 1.08991 * 109.47275 * 60.00124 * 12 11 2 36 36 H 1.09002 * 109.47152 * 180.02562 * 12 11 2 37 37 H 1.08999 * 109.47093 * 180.02562 * 13 12 11 38 38 H 1.09007 * 109.47443 * 60.00021 * 13 12 11 39 39 H 1.09002 * 109.47119 * 299.99770 * 14 13 12 40 40 H 0.97003 * 119.99492 * 265.00056 * 15 14 13 41 41 H 0.97004 * 120.00428 * 179.97438 * 19 18 16 42 42 H 1.08999 * 109.46484 * 179.97438 * 24 14 13 43 43 H 1.08993 * 109.47158 * 60.00058 * 24 14 13 44 44 H 1.09002 * 109.47178 * 179.97438 * 25 11 2 45 45 H 1.08999 * 109.47117 * 299.99830 * 25 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3855 2.4722 0.0063 6 6 0.8652 2.8734 -1.3760 7 16 1.0681 4.6229 -0.9408 8 8 0.0072 5.1152 -0.1336 9 8 1.6442 5.3873 -1.9911 10 6 2.3034 3.6969 0.0122 11 6 2.1975 -1.2687 -0.0006 12 6 3.0921 -1.3406 -1.2397 13 6 2.2276 -1.2502 -2.4989 14 6 1.2334 -2.4130 -2.5194 15 7 0.4060 -2.3268 -3.7254 16 6 0.8548 -2.8617 -4.9034 17 1 1.8188 -3.3468 -4.9435 18 6 0.0705 -2.7804 -6.0458 19 7 -1.1041 -2.1888 -5.9970 20 14 0.6824 -3.5107 -7.6526 21 1 0.9126 -4.9673 -7.4784 22 1 -0.3338 -3.2940 -8.7135 23 1 1.9546 -2.8517 -8.0430 24 6 0.3388 -2.3412 -1.2803 25 6 1.2033 -2.4315 -0.0212 26 1 -0.3634 0.1061 -1.0221 27 1 -0.3634 -0.9382 0.4193 28 1 -0.3632 0.8323 0.6030 29 1 0.6189 2.5076 0.7803 30 1 1.5184 2.5554 -2.1885 31 1 -0.1745 2.5907 -1.5410 32 1 2.4683 4.1040 1.0098 33 1 3.2338 3.5377 -0.5329 34 1 2.8134 -1.3332 0.8964 35 1 3.8003 -0.5123 -1.2251 36 1 3.6368 -2.2848 -1.2404 37 1 2.8649 -1.3018 -3.3816 38 1 1.6826 -0.3062 -2.4985 39 1 1.7784 -3.3571 -2.5199 40 1 -0.4597 -1.8907 -3.6894 41 1 -1.6520 -2.1316 -6.7955 42 1 -0.3697 -3.1693 -1.2953 43 1 -0.2061 -1.3972 -1.2799 44 1 1.7483 -3.3756 -0.0221 45 1 0.5660 -2.3804 0.8616 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963365455.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:11 Heat of formation + Delta-G solvation = -50.252502 kcal Electronic energy + Delta-G solvation = -27873.429419 eV Core-core repulsion = 24020.289392 eV Total energy + Delta-G solvation = -3853.140027 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.84881 -38.46266 -37.61007 -36.42019 -35.91974 -35.15848 -33.19874 -31.13846 -30.73568 -28.22698 -26.94536 -26.48933 -24.76790 -23.36963 -22.31899 -21.03549 -19.80636 -19.12309 -18.88630 -17.61946 -17.17968 -16.80442 -16.58222 -16.10149 -15.86759 -15.50836 -15.21598 -14.75325 -14.11036 -14.03418 -13.85086 -13.56514 -13.42903 -13.09815 -12.96901 -12.54580 -12.52171 -12.43576 -12.30128 -12.21950 -11.92054 -11.83340 -11.78785 -11.63626 -11.24581 -11.06411 -10.87553 -10.67877 -10.62427 -10.39741 -10.17853 -10.13093 -9.69421 -9.63055 -9.51665 -8.86021 -8.59466 -6.96544 -5.78759 -3.06686 -0.18089 1.63399 2.47448 2.85151 3.35522 3.42610 3.47487 3.47983 3.73372 3.82143 4.20077 4.46616 4.52779 4.56888 4.86545 4.93089 4.95089 4.98815 5.04525 5.15031 5.33186 5.44912 5.49337 5.53891 5.58840 5.64627 5.68203 5.74539 5.83186 5.90924 5.97390 6.07386 6.25328 6.37781 6.46001 6.53902 6.62897 6.79037 6.98884 7.12398 7.31841 7.68605 8.08012 8.40525 9.51575 10.09687 10.44202 11.44031 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.012331 B = 0.003733 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.116028 B = 7499.205126 C = 8817.345935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.595 5.595 3 C 0.540 3.460 4 O -0.530 6.530 5 C -0.095 4.095 6 C -0.591 4.591 7 S 2.415 3.585 8 O -0.913 6.913 9 O -0.920 6.920 10 C -0.579 4.579 11 C 0.154 3.846 12 C -0.137 4.137 13 C -0.128 4.128 14 C 0.180 3.820 15 N -0.725 5.725 16 C -0.237 4.237 17 H 0.068 0.932 18 C -0.013 4.013 19 N -0.935 5.935 20 Si 0.905 3.095 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.151 4.151 25 C -0.122 4.122 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.063 0.937 29 H 0.133 0.867 30 H 0.152 0.848 31 H 0.135 0.865 32 H 0.127 0.873 33 H 0.155 0.845 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.051 0.949 39 H 0.042 0.958 40 H 0.382 0.618 41 H 0.255 0.745 42 H 0.063 0.937 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.749 9.155 17.491 19.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.328 5.328 3 C 0.325 3.675 4 O -0.407 6.407 5 C -0.119 4.119 6 C -0.719 4.719 7 S 2.596 3.404 8 O -0.911 6.911 9 O -0.917 6.917 10 C -0.708 4.708 11 C 0.052 3.948 12 C -0.175 4.175 13 C -0.168 4.168 14 C 0.070 3.930 15 N -0.365 5.365 16 C -0.368 4.368 17 H 0.086 0.914 18 C -0.209 4.209 19 N -0.583 5.583 20 Si 0.736 3.264 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.189 4.189 25 C -0.160 4.160 26 H 0.091 0.909 27 H 0.108 0.892 28 H 0.081 0.919 29 H 0.151 0.849 30 H 0.170 0.830 31 H 0.154 0.846 32 H 0.146 0.854 33 H 0.173 0.827 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.215 0.785 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.100 0.900 44 H 0.096 0.904 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.028 10.149 17.105 20.119 hybrid contribution 0.317 -1.488 -0.764 1.703 sum 3.345 8.661 16.341 18.794 Atomic orbital electron populations 1.22324 0.79876 1.03488 1.02474 1.47785 1.06935 1.05672 1.72410 1.19556 0.87448 0.84074 0.76446 1.90670 1.13499 1.86922 1.49613 1.21593 0.98337 0.94500 0.97448 1.30982 1.11167 1.26110 1.03690 1.08282 0.77915 0.76911 0.77282 1.93720 1.51265 1.78316 1.67767 1.93665 1.76591 1.68604 1.52827 1.30877 1.15936 1.07807 1.16130 1.21080 0.93068 0.82007 0.98686 1.21982 0.98455 1.02539 0.94570 1.22162 0.98354 1.00610 0.95714 1.20189 0.91137 0.95454 0.86220 1.42395 1.20103 1.69077 1.04933 1.19191 1.01198 1.29265 0.87157 0.91379 1.24701 0.96730 1.01505 0.97940 1.69633 1.11350 1.48798 1.28565 0.86303 0.77591 0.78864 0.83656 1.21320 1.21700 1.21310 1.22432 0.98773 1.03472 0.94193 1.21816 0.97891 0.97681 0.98613 0.90935 0.89227 0.91859 0.84905 0.83010 0.84629 0.85415 0.82723 0.91208 0.90505 0.91638 0.92380 0.93021 0.93948 0.78502 0.93521 0.91816 0.90010 0.90358 0.91712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.55 7.89 59.85 0.47 1.02 16 2 N -0.60 -6.79 2.25 -173.93 -0.39 -7.18 16 3 C 0.54 6.55 6.88 -10.99 -0.08 6.47 16 4 O -0.53 -8.12 13.99 5.55 0.08 -8.04 16 5 C -0.10 -0.81 2.70 -91.73 -0.25 -1.05 16 6 C -0.59 -4.66 7.31 37.18 0.27 -4.39 16 7 S 2.42 18.22 7.55 -107.50 -0.81 17.41 16 8 O -0.91 -9.02 18.18 -57.30 -1.04 -10.06 16 9 O -0.92 -10.57 18.18 -57.30 -1.04 -11.61 16 10 C -0.58 -4.24 7.18 37.18 0.27 -3.97 16 11 C 0.15 1.90 2.95 -67.93 -0.20 1.70 16 12 C -0.14 -2.01 5.23 -26.73 -0.14 -2.15 16 13 C -0.13 -2.26 5.34 -26.73 -0.14 -2.40 16 14 C 0.18 3.37 2.77 -67.92 -0.19 3.18 16 15 N -0.72 -17.43 5.12 -53.42 -0.27 -17.70 16 16 C -0.24 -6.46 9.93 -15.06 -0.15 -6.60 16 17 H 0.07 1.83 7.83 -52.49 -0.41 1.41 16 18 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 19 N -0.93 -27.64 13.06 55.49 0.72 -26.91 16 20 Si 0.90 22.26 29.55 -169.99 -5.02 17.23 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 C -0.15 -2.17 4.73 -26.73 -0.13 -2.30 16 25 C -0.12 -1.38 4.91 -26.73 -0.13 -1.51 16 26 H 0.07 0.74 6.70 -51.93 -0.35 0.39 16 27 H 0.09 0.74 4.95 -51.93 -0.26 0.48 16 28 H 0.06 0.40 6.49 -51.93 -0.34 0.06 16 29 H 0.13 0.76 7.03 -51.93 -0.37 0.39 16 30 H 0.15 1.37 8.11 -51.93 -0.42 0.95 16 31 H 0.14 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.13 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.15 1.30 7.57 -51.93 -0.39 0.91 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 1.24 6.11 -51.93 -0.32 0.92 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.05 0.93 7.60 -51.93 -0.39 0.54 16 39 H 0.04 0.84 8.08 -51.93 -0.42 0.42 16 40 H 0.38 9.66 7.80 -40.82 -0.32 9.34 16 41 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.08 1.11 3.66 -51.93 -0.19 0.92 16 44 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.06 0.60 6.89 -51.93 -0.36 0.24 16 LS Contribution 356.65 15.07 5.37 5.37 Total: -1.00 -37.05 356.65 -9.52 -46.57 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -6.62 Total: 7.38 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: -0.49 Total: -12.47 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: 0.06 Total: -51.79 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -2.01 Total: -29.71 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Atomic # 16 Polarization: 18.22 SS G_CDS: -0.81 Total: 17.41 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -37.05 -9.52 -46.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963365455.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.686 kcal (2) G-P(sol) polarization free energy of solvation -37.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds