Wall clock time and date at job start Fri Apr 10 2020 14:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34777 * 120.00220 * 2 1 4 4 O 1.21287 * 119.99928 * 180.02562 * 3 2 1 5 5 C 1.50693 * 119.99946 * 0.27692 * 3 2 1 6 6 C 1.53049 * 113.15575 * 280.09730 * 5 3 2 7 7 S 1.81418 * 89.89213 * 211.85379 * 6 5 3 8 8 O 1.42102 * 112.75748 * 280.47251 * 7 6 5 9 9 O 1.42104 * 112.75548 * 136.72769 * 7 6 5 10 10 C 1.53043 * 113.15149 * 179.72414 * 5 3 2 11 11 C 1.46500 * 119.99807 * 180.02562 * 2 1 3 12 12 C 1.53008 * 109.46988 * 120.79804 * 11 2 1 13 13 C 1.53000 * 109.47070 * 300.00015 * 12 11 2 14 14 C 1.53007 * 109.47054 * 300.00226 * 13 12 11 15 15 N 1.46505 * 109.46862 * 180.02562 * 14 13 12 16 16 C 1.36936 * 120.00320 * 84.99870 * 15 14 13 17 17 H 1.07995 * 119.99784 * 359.97438 * 16 15 14 18 18 C 1.38813 * 119.99727 * 179.97438 * 16 15 14 19 19 N 1.31610 * 120.00415 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99585 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47265 * 59.99818 * 20 18 16 22 22 H 1.48499 * 109.46973 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46856 * 300.00017 * 20 18 16 24 24 C 1.53000 * 109.47148 * 60.00012 * 14 13 12 25 25 C 1.52999 * 109.47084 * 0.79867 * 11 2 1 26 26 H 1.08998 * 109.47510 * 84.07316 * 1 2 3 27 27 H 1.08996 * 109.47359 * 204.08178 * 1 2 3 28 28 H 1.09001 * 109.46464 * 324.07716 * 1 2 3 29 29 H 1.08998 * 112.50024 * 49.94019 * 5 3 2 30 30 H 1.09000 * 113.14388 * 327.11732 * 6 5 3 31 31 H 1.08999 * 113.14481 * 96.59379 * 6 5 3 32 32 H 1.09003 * 113.14932 * 263.40660 * 10 5 3 33 33 H 1.09004 * 113.14875 * 32.89204 * 10 5 3 34 34 H 1.08994 * 109.47708 * 240.79558 * 11 2 1 35 35 H 1.08991 * 109.47275 * 60.00124 * 12 11 2 36 36 H 1.09002 * 109.47152 * 180.02562 * 12 11 2 37 37 H 1.08999 * 109.47093 * 180.02562 * 13 12 11 38 38 H 1.09007 * 109.47443 * 60.00021 * 13 12 11 39 39 H 1.09002 * 109.47119 * 299.99770 * 14 13 12 40 40 H 0.97003 * 119.99492 * 265.00056 * 15 14 13 41 41 H 0.97004 * 120.00428 * 179.97438 * 19 18 16 42 42 H 1.08999 * 109.46484 * 179.97438 * 24 14 13 43 43 H 1.08993 * 109.47158 * 60.00058 * 24 14 13 44 44 H 1.09002 * 109.47178 * 179.97438 * 25 11 2 45 45 H 1.08999 * 109.47117 * 299.99830 * 25 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3855 2.4722 0.0063 6 6 0.8652 2.8734 -1.3760 7 16 1.0681 4.6229 -0.9408 8 8 0.0072 5.1152 -0.1336 9 8 1.6442 5.3873 -1.9911 10 6 2.3034 3.6969 0.0122 11 6 2.1975 -1.2687 -0.0006 12 6 3.0921 -1.3406 -1.2397 13 6 2.2276 -1.2502 -2.4989 14 6 1.2334 -2.4130 -2.5194 15 7 0.4060 -2.3268 -3.7254 16 6 0.8548 -2.8617 -4.9034 17 1 1.8188 -3.3468 -4.9435 18 6 0.0705 -2.7804 -6.0458 19 7 -1.1041 -2.1888 -5.9970 20 14 0.6824 -3.5107 -7.6526 21 1 0.9126 -4.9673 -7.4784 22 1 -0.3338 -3.2940 -8.7135 23 1 1.9546 -2.8517 -8.0430 24 6 0.3388 -2.3412 -1.2803 25 6 1.2033 -2.4315 -0.0212 26 1 -0.3634 0.1061 -1.0221 27 1 -0.3634 -0.9382 0.4193 28 1 -0.3632 0.8323 0.6030 29 1 0.6189 2.5076 0.7803 30 1 1.5184 2.5554 -2.1885 31 1 -0.1745 2.5907 -1.5410 32 1 2.4683 4.1040 1.0098 33 1 3.2338 3.5377 -0.5329 34 1 2.8134 -1.3332 0.8964 35 1 3.8003 -0.5123 -1.2251 36 1 3.6368 -2.2848 -1.2404 37 1 2.8649 -1.3018 -3.3816 38 1 1.6826 -0.3062 -2.4985 39 1 1.7784 -3.3571 -2.5199 40 1 -0.4597 -1.8907 -3.6894 41 1 -1.6520 -2.1316 -6.7955 42 1 -0.3697 -3.1693 -1.2953 43 1 -0.2061 -1.3972 -1.2799 44 1 1.7483 -3.3756 -0.0221 45 1 0.5660 -2.3804 0.8616 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963365455.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:08 Heat of formation + Delta-G solvation = -78.204966 kcal Electronic energy + Delta-G solvation = -27874.641529 eV Core-core repulsion = 24020.289392 eV Total energy + Delta-G solvation = -3854.352137 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.145 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.80637 -39.53975 -38.39085 -37.20701 -36.76531 -36.54359 -34.73032 -32.73194 -31.99969 -29.69944 -27.58685 -27.45723 -25.98049 -24.92900 -23.55029 -22.25124 -20.99970 -19.84372 -19.78340 -19.11791 -18.44000 -17.57639 -17.26375 -17.10291 -16.92925 -16.67102 -16.28037 -15.99759 -15.43465 -15.28123 -15.13322 -14.74560 -14.54057 -14.12194 -13.99899 -13.79542 -13.56618 -13.33778 -13.31507 -13.17562 -13.05410 -12.83462 -12.80310 -12.78980 -12.59047 -12.50474 -12.20676 -12.06495 -11.98533 -11.89553 -11.40973 -11.32272 -11.28566 -11.06621 -10.88573 -10.45782 -9.53441 -8.97118 -7.94497 -5.20909 -0.84945 0.99401 1.45419 1.47045 1.53108 1.59915 2.01902 2.55454 2.72112 3.05877 3.16084 3.38526 3.47616 3.71297 3.77959 3.89541 3.92725 4.02863 4.26338 4.29159 4.33986 4.39007 4.42992 4.48916 4.62343 4.63887 4.65820 4.72445 4.83877 4.87366 4.94959 4.98082 5.07904 5.14749 5.22997 5.27371 5.31036 5.47887 5.55482 5.65787 5.73225 6.29239 6.44207 7.17925 7.35437 8.13645 8.36753 9.28523 Molecular weight = 330.14amu Principal moments of inertia in cm(-1) A = 0.012331 B = 0.003733 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.116028 B = 7499.205126 C = 8817.345935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.596 5.596 3 C 0.531 3.469 4 O -0.569 6.569 5 C -0.098 4.098 6 C -0.595 4.595 7 S 2.458 3.542 8 O -0.929 6.929 9 O -0.961 6.961 10 C -0.572 4.572 11 C 0.155 3.845 12 C -0.129 4.129 13 C -0.114 4.114 14 C 0.175 3.825 15 N -0.735 5.735 16 C -0.239 4.239 17 H 0.066 0.934 18 C -0.070 4.070 19 N -0.966 5.966 20 Si 0.963 3.037 21 H -0.279 1.279 22 H -0.294 1.294 23 H -0.284 1.284 24 C -0.143 4.143 25 C -0.111 4.111 26 H 0.059 0.941 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.170 0.830 30 H 0.135 0.865 31 H 0.154 0.846 32 H 0.153 0.847 33 H 0.142 0.858 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.022 0.978 38 H 0.045 0.955 39 H 0.030 0.970 40 H 0.374 0.626 41 H 0.250 0.750 42 H 0.058 0.942 43 H 0.094 0.906 44 H 0.084 0.916 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.191 9.009 19.771 21.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.328 5.328 3 C 0.318 3.682 4 O -0.449 6.449 5 C -0.121 4.121 6 C -0.723 4.723 7 S 2.640 3.360 8 O -0.927 6.927 9 O -0.958 6.958 10 C -0.701 4.701 11 C 0.052 3.948 12 C -0.168 4.168 13 C -0.155 4.155 14 C 0.067 3.933 15 N -0.375 5.375 16 C -0.371 4.371 17 H 0.084 0.916 18 C -0.263 4.263 19 N -0.617 5.617 20 Si 0.793 3.207 21 H -0.205 1.205 22 H -0.220 1.220 23 H -0.210 1.210 24 C -0.181 4.181 25 C -0.148 4.148 26 H 0.078 0.922 27 H 0.121 0.879 28 H 0.116 0.884 29 H 0.187 0.813 30 H 0.154 0.846 31 H 0.172 0.828 32 H 0.171 0.829 33 H 0.160 0.840 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.040 0.960 38 H 0.064 0.936 39 H 0.048 0.952 40 H 0.206 0.794 41 H 0.059 0.941 42 H 0.077 0.923 43 H 0.112 0.888 44 H 0.102 0.898 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.476 10.000 19.412 21.976 hybrid contribution 0.550 -1.469 -1.435 2.125 sum 3.025 8.532 17.977 20.128 Atomic orbital electron populations 1.22540 0.78213 1.05838 1.02550 1.47885 1.07980 1.05161 1.71748 1.20159 0.87264 0.85262 0.75561 1.90654 1.15297 1.87600 1.51343 1.21809 0.99048 0.92681 0.98526 1.31000 1.12059 1.26026 1.03250 1.07029 0.76997 0.75918 0.76030 1.93690 1.52160 1.78828 1.67988 1.93607 1.77433 1.70030 1.54766 1.30803 1.15011 1.06997 1.17335 1.21024 0.93238 0.83110 0.97391 1.21884 0.98258 1.02251 0.94424 1.21939 0.97817 0.99772 0.95958 1.20422 0.91529 0.94945 0.86426 1.42580 1.20328 1.68766 1.05781 1.19508 1.00853 1.28208 0.88498 0.91575 1.25402 0.97193 1.02788 1.00899 1.69766 1.12422 1.50552 1.28936 0.85361 0.76886 0.78416 0.80027 1.20494 1.21990 1.21036 1.22373 0.98331 1.04053 0.93313 1.21767 0.97584 0.97421 0.98067 0.92232 0.87916 0.88361 0.81250 0.84617 0.82753 0.82851 0.83969 0.90046 0.91965 0.91081 0.95951 0.93640 0.95207 0.79444 0.94070 0.92282 0.88791 0.89786 0.88149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.72 7.89 127.77 1.01 1.73 16 2 N -0.60 -12.09 2.25 -822.59 -1.85 -13.94 16 3 C 0.53 11.93 6.88 87.65 0.60 12.53 16 4 O -0.57 -17.04 13.99 -3.05 -0.04 -17.08 16 5 C -0.10 -1.40 2.70 -11.51 -0.03 -1.43 16 6 C -0.59 -8.57 7.31 72.00 0.53 -8.04 16 7 S 2.46 34.11 7.55 -56.49 -0.43 33.69 16 8 O -0.93 -16.43 18.18 -127.88 -2.32 -18.75 16 9 O -0.96 -22.06 18.18 -127.88 -2.32 -24.39 16 10 C -0.57 -7.36 7.18 72.00 0.52 -6.84 16 11 C 0.16 3.47 2.95 44.99 0.13 3.60 16 12 C -0.13 -3.76 5.23 30.60 0.16 -3.60 16 13 C -0.11 -4.13 5.34 30.60 0.16 -3.96 16 14 C 0.17 6.55 2.77 44.99 0.12 6.68 16 15 N -0.74 -35.87 5.12 -322.92 -1.65 -37.52 16 16 C -0.24 -13.20 9.93 84.03 0.83 -12.37 16 17 H 0.07 3.61 7.83 -2.91 -0.02 3.58 16 18 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 19 N -0.97 -57.95 13.06 21.65 0.28 -57.67 16 20 Si 0.96 46.24 29.55 68.60 2.03 48.27 16 21 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 22 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 23 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 24 C -0.14 -3.86 4.73 30.59 0.14 -3.72 16 25 C -0.11 -2.14 4.91 30.59 0.15 -1.99 16 26 H 0.06 1.06 6.70 -2.39 -0.02 1.04 16 27 H 0.10 1.24 4.95 -2.39 -0.01 1.23 16 28 H 0.10 0.76 6.49 -2.39 -0.02 0.75 16 29 H 0.17 1.16 7.03 -2.39 -0.02 1.14 16 30 H 0.14 2.49 8.11 -2.39 -0.02 2.47 16 31 H 0.15 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.15 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.14 2.33 7.57 -2.38 -0.02 2.31 16 34 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.06 2.03 6.11 -2.39 -0.01 2.01 16 36 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.04 1.67 7.60 -2.38 -0.02 1.65 16 39 H 0.03 1.19 8.08 -2.39 -0.02 1.17 16 40 H 0.37 19.20 7.80 -92.71 -0.72 18.48 16 41 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 42 H 0.06 1.67 8.14 -2.39 -0.02 1.66 16 43 H 0.09 2.34 3.66 -2.39 -0.01 2.34 16 44 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.10 1.35 6.89 -2.39 -0.02 1.33 16 Total: -1.00 -81.50 356.65 -1.22 -82.72 By element: Atomic # 1 Polarization: 25.34 SS G_CDS: 0.29 Total: 25.63 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: 4.80 Total: -20.96 kcal Atomic # 7 Polarization: -105.91 SS G_CDS: -3.22 Total: -109.13 kcal Atomic # 8 Polarization: -55.53 SS G_CDS: -4.69 Total: -60.22 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Atomic # 16 Polarization: 34.11 SS G_CDS: -0.43 Total: 33.69 kcal Total: -81.50 -1.22 -82.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963365455.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.517 kcal (2) G-P(sol) polarization free energy of solvation -81.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds