Wall clock time and date at job start Fri Apr 10 2020 14:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35998 * 116.99769 * 2 1 4 4 C 1.38565 * 120.06981 * 359.97438 * 3 2 1 5 5 C 1.38245 * 119.99725 * 179.97438 * 4 3 2 6 6 C 1.50706 * 119.92822 * 180.02562 * 5 4 3 7 7 H 1.08994 * 110.15244 * 190.28573 * 6 5 4 8 8 C 1.51110 * 110.22931 * 68.70174 * 6 5 4 9 9 C 1.40978 * 126.69265 * 60.91687 * 8 6 5 10 10 C 1.50701 * 119.99546 * 5.93156 * 9 8 6 11 11 O 1.21446 * 120.00269 * 185.93486 * 9 8 6 12 12 C 1.36160 * 106.62043 * 241.14554 * 8 6 5 13 13 O 1.35255 * 125.43717 * 179.79221 * 12 8 6 14 14 C 1.47287 * 109.12057 * 359.76967 * 12 8 6 15 15 O 1.21636 * 124.95195 * 180.02562 * 14 12 8 16 16 N 1.34503 * 110.09721 * 0.02562 * 14 12 8 17 17 C 1.36000 * 125.98833 * 179.97438 * 16 14 12 18 18 H 1.08000 * 120.00383 * 338.21864 * 17 16 14 19 19 C 1.39695 * 120.00267 * 158.22200 * 17 16 14 20 20 N 1.30958 * 120.00082 * 351.58347 * 19 17 16 21 21 Si 1.86795 * 120.00130 * 171.85273 * 19 17 16 22 22 H 1.48509 * 109.47473 * 179.72379 * 21 19 17 23 23 H 1.48501 * 109.47540 * 299.72451 * 21 19 17 24 24 H 1.48500 * 109.47244 * 59.72790 * 21 19 17 25 25 C 1.38256 * 120.14775 * 0.27410 * 5 4 3 26 26 C 1.38245 * 120.14242 * 359.45057 * 25 5 4 27 27 C 1.38563 * 120.00055 * 0.55170 * 26 25 5 28 28 O 1.35992 * 120.07129 * 179.75062 * 27 26 25 29 29 H 1.09005 * 109.46464 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47719 * 299.99970 * 1 2 3 31 31 H 1.09001 * 109.46839 * 60.00759 * 1 2 3 32 32 H 1.07995 * 120.00442 * 359.95844 * 4 3 2 33 33 H 1.08995 * 109.46955 * 5.42290 * 10 9 8 34 34 H 1.09001 * 109.46930 * 125.42566 * 10 9 8 35 35 H 1.09001 * 109.46813 * 245.41965 * 10 9 8 36 36 H 0.96702 * 113.99638 * 180.02562 * 13 12 8 37 37 H 0.96993 * 120.00104 * 179.97438 * 20 19 17 38 38 H 1.07996 * 119.92513 * 179.72497 * 25 5 4 39 39 H 1.08001 * 119.99925 * 180.27324 * 26 25 5 40 40 H 0.96705 * 113.99456 * 269.96770 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2930 2.3748 -0.0005 5 6 1.9222 3.6058 0.0000 6 6 1.1013 4.8697 0.0000 7 1 1.7412 5.7330 -0.1823 8 6 0.3843 5.0271 1.3208 9 6 0.9793 5.1460 2.5934 10 6 2.4771 5.2566 2.7174 11 8 0.2848 5.1592 3.5896 12 6 -0.9486 5.0264 1.0429 13 8 -1.9401 5.1420 1.9556 14 6 -1.1383 4.8803 -0.4104 15 8 -2.2165 4.8454 -0.9724 16 7 0.0545 4.7911 -1.0255 17 6 0.2551 4.6481 -2.3630 18 1 -0.5313 4.2510 -2.9877 19 6 1.4786 5.0146 -2.9289 20 7 2.3706 5.6463 -2.2077 21 14 1.8393 4.6104 -4.7166 22 1 3.1921 5.1084 -5.0736 23 1 1.7859 3.1393 -4.9121 24 1 0.8267 5.2623 -5.5855 25 6 3.3027 3.6800 -0.0046 26 6 4.0601 2.5235 0.0016 27 6 3.4359 1.2865 0.0010 28 8 4.1796 0.1479 0.0020 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 0.2145 2.3196 -0.0016 33 1 2.9199 5.3237 1.7237 34 1 2.7293 6.1500 3.2887 35 1 2.8653 4.3762 3.2295 36 1 -2.8290 5.1210 1.5754 37 1 3.2202 5.9005 -2.6005 38 1 3.7904 4.6436 -0.0087 39 1 5.1384 2.5842 0.0024 40 1 4.3952 -0.1817 -0.8811 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000017730840.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:51:54 Heat of formation + Delta-G solvation = -125.488119 kcal Electronic energy + Delta-G solvation = -30274.365485 eV Core-core repulsion = 26021.655810 eV Total energy + Delta-G solvation = -4252.709674 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.114 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.90008 -39.76481 -38.29758 -37.57732 -37.25049 -36.32421 -35.11466 -33.43061 -31.20332 -29.98031 -29.72032 -29.24435 -27.24042 -25.77839 -25.14837 -22.83499 -21.95189 -21.26076 -20.42766 -18.47077 -18.38016 -17.77641 -17.31946 -16.98997 -15.90270 -15.78841 -15.64960 -15.25264 -14.95024 -14.85782 -14.60118 -14.13918 -14.06876 -13.98828 -13.81678 -13.65742 -13.30392 -12.88087 -12.56372 -12.43601 -12.05898 -11.92433 -11.82829 -11.71058 -11.62713 -11.39440 -11.24593 -11.10537 -10.86410 -10.70627 -10.57296 -10.24465 -9.76633 -9.39176 -8.76961 -8.47686 -8.26259 -8.07373 -7.68332 -6.87286 -4.34469 1.12514 1.58191 1.80782 2.90440 2.97960 2.99028 3.19600 3.50959 3.63796 3.89992 3.94745 4.12862 4.44998 4.54159 4.65707 4.79145 5.09345 5.20837 5.26838 5.38640 5.42341 5.55644 5.57909 5.66151 5.75145 5.78729 5.84588 5.96047 6.15723 6.17532 6.37272 6.57480 6.60679 6.65251 6.68248 6.99411 7.05284 7.12551 7.31207 7.47741 7.71002 7.97652 8.00678 8.23371 8.60704 8.68475 9.48480 10.11959 Molecular weight = 333.11amu Principal moments of inertia in cm(-1) A = 0.008178 B = 0.007457 C = 0.005505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3422.960364 B = 3754.146774 C = 5085.487987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.313 6.313 3 C 0.096 3.904 4 C -0.168 4.168 5 C -0.007 4.007 6 C 0.211 3.789 7 H 0.146 0.854 8 C -0.307 4.307 9 C 0.417 3.583 10 C -0.199 4.199 11 O -0.482 6.482 12 C 0.156 3.844 13 O -0.427 6.427 14 C 0.403 3.597 15 O -0.589 6.589 16 N -0.372 5.372 17 C -0.291 4.291 18 H 0.111 0.889 19 C 0.048 3.952 20 N -0.841 5.841 21 Si 0.934 3.066 22 H -0.276 1.276 23 H -0.268 1.268 24 H -0.267 1.267 25 C -0.106 4.106 26 C -0.116 4.116 27 C 0.060 3.940 28 O -0.490 6.490 29 H 0.096 0.904 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.124 0.876 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.402 0.598 37 H 0.284 0.716 38 H 0.134 0.866 39 H 0.130 0.870 40 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.045 -4.642 1.618 7.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.227 6.227 3 C 0.050 3.950 4 C -0.188 4.188 5 C -0.008 4.008 6 C 0.107 3.893 7 H 0.163 0.837 8 C -0.314 4.314 9 C 0.301 3.699 10 C -0.256 4.256 11 O -0.363 6.363 12 C 0.100 3.900 13 O -0.226 6.226 14 C 0.194 3.806 15 O -0.478 6.478 16 N -0.085 5.085 17 C -0.418 4.418 18 H 0.129 0.871 19 C -0.162 4.162 20 N -0.476 5.476 21 Si 0.759 3.241 22 H -0.201 1.201 23 H -0.193 1.193 24 H -0.192 1.192 25 C -0.124 4.124 26 C -0.134 4.134 27 C 0.015 3.985 28 O -0.299 6.299 29 H 0.114 0.886 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.142 0.858 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.255 0.745 37 H 0.095 0.905 38 H 0.152 0.848 39 H 0.148 0.852 40 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 4.894 -4.668 2.746 7.300 hybrid contribution -0.435 -0.065 -1.813 1.866 sum 4.460 -4.733 0.933 6.569 Atomic orbital electron populations 1.23039 0.78752 1.03370 1.01753 1.86065 1.20990 1.26551 1.89064 1.19321 0.91591 0.84593 0.99463 1.20927 1.00030 0.91448 1.06350 1.19373 0.93400 0.92936 0.95053 1.19355 0.89786 0.97752 0.82451 0.83686 1.21097 0.91906 1.21285 0.97073 1.19858 0.91167 0.72210 0.86674 1.22255 0.95071 1.03663 1.04626 1.90557 1.66181 1.39995 1.39522 1.21875 0.89010 0.88933 0.90189 1.84882 1.18133 1.86378 1.33248 1.18531 0.85715 0.89940 0.86401 1.90683 1.26573 1.60178 1.70385 1.43433 1.04458 1.54803 1.05849 1.19614 1.01227 1.40481 0.80502 0.87136 1.25536 0.95348 0.94277 1.01035 1.69447 1.07674 1.32462 1.38030 0.85831 0.78227 0.79544 0.80491 1.20088 1.19255 1.19151 1.20786 0.92632 0.98056 1.00962 1.21103 1.00007 0.90838 1.01495 1.17643 0.85940 0.86377 1.08506 1.84868 1.71934 1.40230 1.32848 0.88554 0.92842 0.92435 0.85813 0.89720 0.89825 0.89582 0.74522 0.90536 0.84845 0.85205 0.76705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 101.05 0.99 1.36 16 2 O -0.31 -5.31 10.28 -34.23 -0.35 -5.66 16 3 C 0.10 1.72 6.70 -39.12 -0.26 1.46 16 4 C -0.17 -3.20 8.21 -39.46 -0.32 -3.53 16 5 C -0.01 -0.13 3.60 -104.61 -0.38 -0.50 16 6 C 0.21 4.28 1.54 -69.89 -0.11 4.18 16 7 H 0.15 3.04 6.01 -51.93 -0.31 2.73 16 8 C -0.31 -6.18 5.30 -104.13 -0.55 -6.73 16 9 C 0.42 7.97 6.99 -33.27 -0.23 7.73 16 10 C -0.20 -2.94 9.84 36.01 0.35 -2.59 16 11 O -0.48 -10.49 16.85 -8.75 -0.15 -10.64 16 12 C 0.16 3.27 7.38 -36.65 -0.27 3.00 16 13 O -0.43 -8.07 12.72 -33.39 -0.42 -8.50 16 14 C 0.40 9.48 7.89 -12.70 -0.10 9.38 16 15 O -0.59 -15.24 17.60 5.24 0.09 -15.15 16 16 N -0.37 -8.59 2.37 -111.18 -0.26 -8.86 16 17 C -0.29 -6.94 9.58 -15.16 -0.15 -7.09 16 18 H 0.11 2.73 7.85 -52.49 -0.41 2.32 16 19 C 0.05 1.05 5.21 -17.38 -0.09 0.96 16 20 N -0.84 -17.88 9.88 55.53 0.55 -17.33 16 21 Si 0.93 17.66 29.56 -169.99 -5.03 12.63 16 22 H -0.28 -5.07 7.11 56.52 0.40 -4.67 16 23 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 24 H -0.27 -5.13 7.11 56.52 0.40 -4.72 16 25 C -0.11 -1.74 7.59 -39.57 -0.30 -2.04 16 26 C -0.12 -1.77 9.98 -39.46 -0.39 -2.16 16 27 C 0.06 1.00 6.72 -39.12 -0.26 0.74 16 28 O -0.49 -7.27 13.29 -34.21 -0.45 -7.72 16 29 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.05 0.75 7.66 -51.93 -0.40 0.35 16 31 H 0.06 0.83 7.66 -51.93 -0.40 0.43 16 32 H 0.12 2.46 6.22 -52.49 -0.33 2.13 16 33 H 0.08 1.19 4.56 -51.93 -0.24 0.96 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.40 5.88 8.86 45.56 0.40 6.28 16 37 H 0.28 5.63 8.30 -40.82 -0.34 5.29 16 38 H 0.13 2.03 7.35 -52.49 -0.39 1.65 16 39 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 40 H 0.38 3.94 9.06 45.56 0.41 4.36 16 LS Contribution 346.25 15.07 5.22 5.22 Total: -1.00 -30.85 346.25 -5.36 -36.21 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -2.48 Total: 15.65 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: -2.07 Total: 4.15 kcal Atomic # 7 Polarization: -26.47 SS G_CDS: 0.28 Total: -26.19 kcal Atomic # 8 Polarization: -46.38 SS G_CDS: -1.29 Total: -47.67 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.03 Total: 12.63 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.85 -5.36 -36.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000017730840.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.277 kcal (2) G-P(sol) polarization free energy of solvation -30.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds