Wall clock time and date at job start Fri Apr 10 2020 14:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35998 * 116.99769 * 2 1 4 4 C 1.38565 * 120.06981 * 359.97438 * 3 2 1 5 5 C 1.38245 * 119.99725 * 179.97438 * 4 3 2 6 6 C 1.50706 * 119.92822 * 180.02562 * 5 4 3 7 7 H 1.08994 * 110.15244 * 190.28573 * 6 5 4 8 8 C 1.51110 * 110.22931 * 68.70174 * 6 5 4 9 9 C 1.40978 * 126.69265 * 60.91687 * 8 6 5 10 10 C 1.50701 * 119.99546 * 5.93156 * 9 8 6 11 11 O 1.21446 * 120.00269 * 185.93486 * 9 8 6 12 12 C 1.36160 * 106.62043 * 241.14554 * 8 6 5 13 13 O 1.35255 * 125.43717 * 179.79221 * 12 8 6 14 14 C 1.47287 * 109.12057 * 359.76967 * 12 8 6 15 15 O 1.21636 * 124.95195 * 180.02562 * 14 12 8 16 16 N 1.34503 * 110.09721 * 0.02562 * 14 12 8 17 17 C 1.36000 * 125.98833 * 179.97438 * 16 14 12 18 18 H 1.08000 * 120.00383 * 338.21864 * 17 16 14 19 19 C 1.39695 * 120.00267 * 158.22200 * 17 16 14 20 20 N 1.30958 * 120.00082 * 351.58347 * 19 17 16 21 21 Si 1.86795 * 120.00130 * 171.85273 * 19 17 16 22 22 H 1.48509 * 109.47473 * 179.72379 * 21 19 17 23 23 H 1.48501 * 109.47540 * 299.72451 * 21 19 17 24 24 H 1.48500 * 109.47244 * 59.72790 * 21 19 17 25 25 C 1.38256 * 120.14775 * 0.27410 * 5 4 3 26 26 C 1.38245 * 120.14242 * 359.45057 * 25 5 4 27 27 C 1.38563 * 120.00055 * 0.55170 * 26 25 5 28 28 O 1.35992 * 120.07129 * 179.75062 * 27 26 25 29 29 H 1.09005 * 109.46464 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47719 * 299.99970 * 1 2 3 31 31 H 1.09001 * 109.46839 * 60.00759 * 1 2 3 32 32 H 1.07995 * 120.00442 * 359.95844 * 4 3 2 33 33 H 1.08995 * 109.46955 * 5.42290 * 10 9 8 34 34 H 1.09001 * 109.46930 * 125.42566 * 10 9 8 35 35 H 1.09001 * 109.46813 * 245.41965 * 10 9 8 36 36 H 0.96702 * 113.99638 * 180.02562 * 13 12 8 37 37 H 0.96993 * 120.00104 * 179.97438 * 20 19 17 38 38 H 1.07996 * 119.92513 * 179.72497 * 25 5 4 39 39 H 1.08001 * 119.99925 * 180.27324 * 26 25 5 40 40 H 0.96705 * 113.99456 * 269.96770 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2930 2.3748 -0.0005 5 6 1.9222 3.6058 0.0000 6 6 1.1013 4.8697 0.0000 7 1 1.7412 5.7330 -0.1823 8 6 0.3843 5.0271 1.3208 9 6 0.9793 5.1460 2.5934 10 6 2.4771 5.2566 2.7174 11 8 0.2848 5.1592 3.5896 12 6 -0.9486 5.0264 1.0429 13 8 -1.9401 5.1420 1.9556 14 6 -1.1383 4.8803 -0.4104 15 8 -2.2165 4.8454 -0.9724 16 7 0.0545 4.7911 -1.0255 17 6 0.2551 4.6481 -2.3630 18 1 -0.5313 4.2510 -2.9877 19 6 1.4786 5.0146 -2.9289 20 7 2.3706 5.6463 -2.2077 21 14 1.8393 4.6104 -4.7166 22 1 3.1921 5.1084 -5.0736 23 1 1.7859 3.1393 -4.9121 24 1 0.8267 5.2623 -5.5855 25 6 3.3027 3.6800 -0.0046 26 6 4.0601 2.5235 0.0016 27 6 3.4359 1.2865 0.0010 28 8 4.1796 0.1479 0.0020 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 0.2145 2.3196 -0.0016 33 1 2.9199 5.3237 1.7237 34 1 2.7293 6.1500 3.2887 35 1 2.8653 4.3762 3.2295 36 1 -2.8290 5.1210 1.5754 37 1 3.2202 5.9005 -2.6005 38 1 3.7904 4.6436 -0.0087 39 1 5.1384 2.5842 0.0024 40 1 4.3952 -0.1817 -0.8811 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000017730840.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:51:53 Heat of formation + Delta-G solvation = -147.463294 kcal Electronic energy + Delta-G solvation = -30275.318400 eV Core-core repulsion = 26021.655810 eV Total energy + Delta-G solvation = -4253.662589 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.114 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.48954 -41.11225 -39.90671 -38.96979 -38.61892 -37.83831 -36.70226 -35.13055 -32.82727 -31.31175 -31.14630 -30.58825 -28.49979 -27.46978 -26.63638 -24.38770 -23.24477 -22.65129 -22.08405 -20.01523 -19.74382 -19.38692 -18.84838 -18.41684 -17.50144 -17.20986 -16.92304 -16.78603 -16.52348 -16.21693 -16.07751 -15.72339 -15.59929 -15.49994 -15.14430 -14.95598 -14.74643 -14.42023 -14.20714 -13.96903 -13.49660 -13.41702 -13.10522 -12.96637 -12.92641 -12.90257 -12.74461 -12.62642 -12.28229 -12.15826 -11.89864 -11.48973 -11.43269 -11.04442 -10.47221 -10.13909 -9.77277 -9.60459 -8.99754 -8.57819 -6.15137 -0.49492 0.25855 0.48610 1.35232 1.42484 1.49821 1.63269 2.06471 2.24882 2.29686 2.41975 2.70287 2.86696 3.00905 3.15959 3.33212 3.64875 3.82237 3.94537 3.99725 4.19705 4.22559 4.34043 4.45887 4.50039 4.57925 4.70199 4.73518 4.80525 4.90265 4.93901 5.05781 5.19427 5.25567 5.29621 5.39955 5.55434 5.72543 5.79425 6.21521 6.25588 6.28937 6.72828 6.82250 6.91484 6.92610 7.70577 8.41571 Molecular weight = 333.11amu Principal moments of inertia in cm(-1) A = 0.008178 B = 0.007457 C = 0.005505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3422.960364 B = 3754.146774 C = 5085.487987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.321 6.321 3 C 0.080 3.920 4 C -0.184 4.184 5 C -0.022 4.022 6 C 0.217 3.783 7 H 0.144 0.856 8 C -0.304 4.304 9 C 0.415 3.585 10 C -0.190 4.190 11 O -0.512 6.512 12 C 0.146 3.854 13 O -0.429 6.429 14 C 0.378 3.622 15 O -0.632 6.632 16 N -0.371 5.371 17 C -0.329 4.329 18 H 0.087 0.913 19 C 0.032 3.968 20 N -0.835 5.835 21 Si 0.988 3.012 22 H -0.255 1.255 23 H -0.271 1.271 24 H -0.275 1.275 25 C -0.103 4.103 26 C -0.103 4.103 27 C 0.064 3.936 28 O -0.494 6.494 29 H 0.130 0.870 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.417 0.583 37 H 0.296 0.704 38 H 0.150 0.850 39 H 0.166 0.834 40 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.556 -5.009 1.499 10.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.235 6.235 3 C 0.035 3.965 4 C -0.203 4.203 5 C -0.023 4.023 6 C 0.114 3.886 7 H 0.161 0.839 8 C -0.311 4.311 9 C 0.301 3.699 10 C -0.246 4.246 11 O -0.395 6.395 12 C 0.091 3.909 13 O -0.231 6.231 14 C 0.170 3.830 15 O -0.525 6.525 16 N -0.083 5.083 17 C -0.456 4.456 18 H 0.105 0.895 19 C -0.179 4.179 20 N -0.468 5.468 21 Si 0.810 3.190 22 H -0.179 1.179 23 H -0.196 1.196 24 H -0.200 1.200 25 C -0.121 4.121 26 C -0.121 4.121 27 C 0.019 3.981 28 O -0.306 6.306 29 H 0.149 0.851 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.120 0.880 33 H 0.111 0.889 34 H 0.126 0.874 35 H 0.120 0.880 36 H 0.272 0.728 37 H 0.107 0.893 38 H 0.168 0.832 39 H 0.184 0.816 40 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 8.448 -5.033 2.633 10.180 hybrid contribution -1.458 0.002 -1.808 2.323 sum 6.990 -5.031 0.825 8.652 Atomic orbital electron populations 1.23187 0.77621 1.05292 1.00858 1.86042 1.22158 1.26271 1.89054 1.19554 0.92509 0.84418 1.00023 1.20823 0.99187 0.92433 1.07887 1.19287 0.94313 0.91727 0.97000 1.19363 0.89054 0.98646 0.81545 0.83941 1.21445 0.91601 1.20137 0.97923 1.20444 0.93246 0.70818 0.85421 1.22242 0.91116 1.05474 1.05798 1.90544 1.67428 1.41394 1.40127 1.21721 0.89990 0.90145 0.89050 1.84842 1.18913 1.86336 1.32971 1.18935 0.85566 0.90885 0.87603 1.90616 1.27829 1.62532 1.71508 1.43615 1.05154 1.53227 1.06256 1.19604 1.01973 1.42982 0.81085 0.89479 1.26098 0.94382 0.93477 1.03978 1.69440 1.07770 1.30577 1.39052 0.85069 0.78624 0.79010 0.76342 1.17896 1.19559 1.19973 1.20960 0.91480 0.99417 1.00261 1.21423 1.01612 0.89577 0.99486 1.17823 0.85462 0.87474 1.07356 1.84809 1.71311 1.39657 1.34791 0.85147 0.93455 0.93701 0.88024 0.88920 0.87436 0.87975 0.72759 0.89251 0.83194 0.81624 0.74201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 9.81 113.37 1.11 1.82 16 2 O -0.32 -10.71 10.28 -79.66 -0.82 -11.53 16 3 C 0.08 2.82 6.70 22.57 0.15 2.97 16 4 C -0.18 -7.07 8.21 22.35 0.18 -6.89 16 5 C -0.02 -0.83 3.60 -19.86 -0.07 -0.90 16 6 C 0.22 8.86 1.54 43.58 0.07 8.93 16 7 H 0.14 5.86 6.01 -2.39 -0.01 5.84 16 8 C -0.30 -12.40 5.30 -19.55 -0.10 -12.50 16 9 C 0.42 15.53 6.99 26.36 0.18 15.72 16 10 C -0.19 -5.08 9.84 71.24 0.70 -4.38 16 11 O -0.51 -22.16 16.85 10.00 0.17 -21.99 16 12 C 0.15 6.42 7.38 24.17 0.18 6.60 16 13 O -0.43 -16.89 12.72 -70.15 -0.89 -17.78 16 14 C 0.38 18.81 7.89 86.67 0.68 19.49 16 15 O -0.63 -34.98 17.60 -4.14 -0.07 -35.05 16 16 N -0.37 -17.78 2.37 -624.07 -1.48 -19.26 16 17 C -0.33 -16.23 9.58 84.40 0.81 -15.43 16 18 H 0.09 4.59 7.85 -2.91 -0.02 4.56 16 19 C 0.03 1.36 5.21 85.18 0.44 1.81 16 20 N -0.84 -33.93 9.88 21.78 0.22 -33.71 16 21 Si 0.99 35.06 29.56 68.60 2.03 37.08 16 22 H -0.26 -8.21 7.11 99.48 0.71 -7.51 16 23 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 24 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 25 C -0.10 -3.09 7.59 22.28 0.17 -2.92 16 26 C -0.10 -2.74 9.98 22.35 0.22 -2.52 16 27 C 0.06 1.95 6.72 22.57 0.15 2.10 16 28 O -0.49 -12.98 13.29 -79.60 -1.06 -14.04 16 29 H 0.13 2.70 8.14 -2.38 -0.02 2.68 16 30 H 0.05 1.38 7.66 -2.39 -0.02 1.36 16 31 H 0.04 1.37 7.66 -2.39 -0.02 1.35 16 32 H 0.10 4.28 6.22 -2.91 -0.02 4.27 16 33 H 0.09 2.32 4.56 -2.39 -0.01 2.31 16 34 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.42 13.02 8.86 -74.06 -0.66 12.36 16 37 H 0.30 10.82 8.30 -92.71 -0.77 10.05 16 38 H 0.15 3.98 7.35 -2.91 -0.02 3.96 16 39 H 0.17 3.23 8.06 -2.91 -0.02 3.21 16 40 H 0.40 6.90 9.06 -74.05 -0.67 6.23 16 Total: -1.00 -68.05 346.25 2.79 -65.26 By element: Atomic # 1 Polarization: 37.29 SS G_CDS: -0.18 Total: 37.11 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: 4.88 Total: 13.92 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: -1.27 Total: -52.98 kcal Atomic # 8 Polarization: -97.72 SS G_CDS: -2.67 Total: -100.39 kcal Atomic # 14 Polarization: 35.06 SS G_CDS: 2.03 Total: 37.08 kcal Total: -68.05 2.79 -65.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000017730840.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.202 kcal (2) G-P(sol) polarization free energy of solvation -68.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds