Wall clock time and date at job start Fri Apr 10 2020 14:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47591 * 2 1 4 4 N 1.46497 * 109.46743 * 180.02562 * 3 2 1 5 5 C 1.36902 * 120.00089 * 93.74907 * 4 3 2 6 6 H 1.07998 * 120.00029 * 211.67043 * 5 4 3 7 7 C 1.39026 * 119.99893 * 31.66763 * 5 4 3 8 8 N 1.31381 * 120.00284 * 19.21369 * 7 5 4 9 9 Si 1.86800 * 120.00205 * 199.21447 * 7 5 4 10 10 H 1.48497 * 109.46899 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47275 * 120.00019 * 9 7 5 12 12 H 1.48505 * 109.47264 * 240.00253 * 9 7 5 13 13 C 1.34777 * 120.00221 * 273.73684 * 4 3 2 14 14 O 1.21618 * 119.99896 * 174.22410 * 13 4 3 15 15 C 1.47548 * 119.99842 * 354.23318 * 13 4 3 16 16 C 1.41581 * 126.44849 * 172.10534 * 15 13 4 17 17 C 1.35342 * 105.55619 * 179.97438 * 16 15 13 18 18 N 1.35869 * 107.13797 * 359.97438 * 17 16 15 19 19 C 1.40124 * 124.94843 * 180.02562 * 18 17 16 20 20 C 1.38851 * 120.07663 * 352.34161 * 19 18 17 21 21 C 1.38100 * 119.94240 * 179.76796 * 20 19 18 22 22 C 1.38302 * 120.09379 * 0.50727 * 21 20 19 23 23 C 1.38251 * 120.15145 * 359.74803 * 22 21 20 24 24 C 1.38241 * 120.05503 * 359.97438 * 23 22 21 25 25 Cl 1.73599 * 120.04910 * 179.97438 * 24 23 22 26 26 N 1.28474 * 110.09357 * 359.75550 * 18 17 16 27 27 H 1.08992 * 109.47720 * 181.54034 * 1 2 3 28 28 H 1.09000 * 109.47352 * 301.54674 * 1 2 3 29 29 H 1.09009 * 109.46821 * 61.54046 * 1 2 3 30 30 H 1.09007 * 109.46972 * 239.99685 * 2 1 3 31 31 H 1.08999 * 109.46938 * 120.00291 * 2 1 3 32 32 H 1.08994 * 109.46979 * 60.06890 * 3 2 1 33 33 H 1.08995 * 109.46849 * 300.06558 * 3 2 1 34 34 H 0.96995 * 120.00747 * 180.02562 * 8 7 5 35 35 H 1.08003 * 127.22196 * 359.97438 * 16 15 13 36 36 H 1.07998 * 126.42655 * 179.97438 * 17 16 15 37 37 H 1.08003 * 120.03031 * 359.97438 * 20 19 18 38 38 H 1.08002 * 119.95554 * 180.23443 * 21 20 19 39 39 H 1.08006 * 119.92658 * 179.76863 * 22 21 20 40 40 H 1.08002 * 119.97218 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4423 -0.0006 5 6 4.1891 1.5199 -1.1840 6 1 5.1483 1.0343 -1.2860 7 6 3.6489 2.2237 -2.2543 8 7 2.7030 3.1115 -2.0464 9 14 4.2677 1.9071 -3.9881 10 1 5.3282 0.8682 -3.9531 11 1 3.1431 1.4389 -4.8374 12 1 4.8244 3.1631 -4.5521 13 6 4.1795 1.3659 1.1638 14 8 5.3910 1.2598 1.1589 15 6 3.4479 1.4109 2.4443 16 6 3.9919 1.1871 3.7322 17 6 2.9578 1.3319 4.5932 18 7 1.8580 1.6270 3.8520 19 6 0.5767 1.8536 4.3720 20 6 0.3224 1.6289 5.7184 21 6 -0.9402 1.8577 6.2290 22 6 -1.9542 2.3001 5.3991 23 6 -1.7067 2.5200 4.0568 24 6 -0.4436 2.2985 3.5403 25 17 -0.1332 2.5741 1.8546 26 7 2.1653 1.6736 2.6054 27 1 -0.3634 -1.0272 0.0276 28 1 -0.3634 0.5377 0.8758 29 1 -0.3633 0.4898 -0.9036 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6778 1.9559 0.8906 33 1 1.6758 1.9566 -0.8894 34 1 2.3258 3.6024 -2.7931 35 1 5.0170 0.9504 3.9762 36 1 2.9991 1.2317 5.6677 37 1 1.1122 1.2787 6.3666 38 1 -1.1372 1.6866 7.2770 39 1 -2.9416 2.4746 5.8005 40 1 -2.5005 2.8659 3.4113 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050601521.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:51:38 Heat of formation + Delta-G solvation = 79.848862 kcal Electronic energy + Delta-G solvation = -26947.539056 eV Core-core repulsion = 23176.735378 eV Total energy + Delta-G solvation = -3770.803679 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 333.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.81705 -40.45561 -39.88902 -37.47091 -37.13154 -34.82851 -34.34518 -33.12118 -32.28374 -31.36521 -30.32645 -27.80890 -26.70798 -24.96588 -24.36858 -22.95635 -22.31740 -21.80202 -20.75081 -19.39222 -18.92592 -17.84842 -17.40292 -17.20333 -16.88328 -16.30659 -16.06658 -15.58943 -15.54694 -15.44598 -15.06275 -14.75359 -14.65870 -14.43490 -14.00555 -13.91052 -13.64988 -13.32513 -13.17015 -12.97788 -12.82957 -12.74571 -12.36540 -12.27897 -12.14138 -11.93056 -11.81589 -11.39534 -11.13604 -10.98978 -10.70807 -10.54265 -10.20263 -9.86291 -9.49892 -9.19665 -8.34449 -6.08051 -0.32667 0.13231 0.87941 1.14097 1.32625 1.37180 1.40703 1.50626 1.54706 2.25472 2.49162 2.63616 3.02894 3.06913 3.33314 3.68042 3.90591 3.97345 4.15512 4.20677 4.27768 4.30537 4.34529 4.43864 4.58927 4.72688 4.75292 4.77524 4.94781 4.96371 5.04706 5.10072 5.19964 5.25992 5.33691 5.37101 5.39455 5.49510 5.66060 5.78448 6.05698 6.17515 6.49400 6.95218 7.10085 7.41254 7.99896 8.63183 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.017291 B = 0.004542 C = 0.003877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.978506 B = 6162.696690 C = 7220.023654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.117 4.117 3 C 0.061 3.939 4 N -0.429 5.429 5 C -0.345 4.345 6 H 0.071 0.929 7 C 0.001 3.999 8 N -0.883 5.883 9 Si 0.990 3.010 10 H -0.269 1.269 11 H -0.262 1.262 12 H -0.271 1.271 13 C 0.506 3.494 14 O -0.626 6.626 15 C -0.016 4.016 16 C -0.198 4.198 17 C 0.003 3.997 18 N -0.250 5.250 19 C 0.115 3.885 20 C -0.115 4.115 21 C -0.082 4.082 22 C -0.099 4.099 23 C -0.100 4.100 24 C -0.075 4.075 25 Cl -0.040 7.040 26 N -0.257 5.257 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.035 0.965 31 H 0.032 0.968 32 H 0.125 0.875 33 H 0.094 0.906 34 H 0.276 0.724 35 H 0.168 0.832 36 H 0.238 0.762 37 H 0.169 0.831 38 H 0.181 0.819 39 H 0.175 0.825 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.127 -2.091 19.174 25.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.156 4.156 3 C -0.061 4.061 4 N -0.145 5.145 5 C -0.473 4.473 6 H 0.089 0.911 7 C -0.201 4.201 8 N -0.521 5.521 9 Si 0.813 3.187 10 H -0.194 1.194 11 H -0.187 1.187 12 H -0.197 1.197 13 C 0.295 3.705 14 O -0.513 6.513 15 C -0.177 4.177 16 C -0.226 4.226 17 C -0.136 4.136 18 N -0.031 5.031 19 C 0.023 3.977 20 C -0.135 4.135 21 C -0.100 4.100 22 C -0.118 4.118 23 C -0.119 4.119 24 C -0.103 4.103 25 Cl -0.011 7.011 26 N -0.090 5.090 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.142 0.858 33 H 0.112 0.888 34 H 0.086 0.914 35 H 0.185 0.815 36 H 0.254 0.746 37 H 0.187 0.813 38 H 0.199 0.801 39 H 0.192 0.808 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -16.663 -1.706 18.302 24.810 hybrid contribution 1.648 -0.168 -1.226 2.061 sum -15.015 -1.874 17.076 22.815 Atomic orbital electron populations 1.21774 0.93564 1.02109 1.02376 1.21651 0.97365 0.97513 0.99074 1.22849 0.79247 0.96895 1.07153 1.43706 1.06875 1.59871 1.04002 1.19640 1.05378 1.32880 0.89446 0.91140 1.26210 0.96922 0.93033 1.03919 1.69899 1.27827 1.20999 1.33400 0.84947 0.78642 0.78542 0.76614 1.19376 1.18710 1.19677 1.17715 0.86189 0.83424 0.83216 1.90526 1.14997 1.58323 1.87458 1.22418 0.91260 1.07991 0.95982 1.22025 1.01674 1.08802 0.90062 1.23567 0.84075 1.05102 1.00834 1.43292 1.07757 1.48059 1.03980 1.18026 0.80585 1.04549 0.94515 1.21316 1.00784 1.01217 0.90212 1.21602 0.90331 0.95778 1.02330 1.21729 1.01777 0.96853 0.91402 1.21356 0.93507 0.99322 0.97691 1.21275 0.95879 1.05995 0.87190 1.98464 1.94913 1.94047 1.13667 1.74211 1.15174 1.20336 0.99265 0.91475 0.91313 0.93233 0.94580 0.94874 0.85777 0.88844 0.91433 0.81496 0.74582 0.81333 0.80123 0.80785 0.82898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.08 9.76 71.98 0.70 -4.37 16 2 C -0.12 -5.34 6.17 30.59 0.19 -5.15 16 3 C 0.06 3.19 4.34 86.38 0.37 3.57 16 4 N -0.43 -25.53 2.57 -639.13 -1.64 -27.17 16 5 C -0.35 -21.51 9.08 84.09 0.76 -20.74 16 6 H 0.07 4.62 7.58 -2.91 -0.02 4.60 16 7 C 0.00 0.08 5.05 84.95 0.43 0.51 16 8 N -0.88 -50.83 10.96 21.68 0.24 -50.60 16 9 Si 0.99 44.84 29.59 68.60 2.03 46.87 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 12 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 13 C 0.51 29.81 7.60 86.70 0.66 30.47 16 14 O -0.63 -40.36 16.71 -4.09 -0.07 -40.43 16 15 C -0.02 -0.77 6.84 42.41 0.29 -0.48 16 16 C -0.20 -7.36 10.81 22.43 0.24 -7.11 16 17 C 0.00 0.08 10.77 83.40 0.90 0.98 16 18 N -0.25 -8.03 3.52 -187.22 -0.66 -8.69 16 19 C 0.11 2.86 6.64 38.13 0.25 3.11 16 20 C -0.12 -1.62 9.43 22.38 0.21 -1.40 16 21 C -0.08 -0.68 10.04 22.25 0.22 -0.45 16 22 C -0.10 -0.95 10.04 22.29 0.22 -0.72 16 23 C -0.10 -1.70 9.82 22.27 0.22 -1.48 16 24 C -0.07 -1.94 6.34 22.44 0.14 -1.80 16 25 Cl -0.04 -1.39 20.53 -2.72 -0.06 -1.44 16 26 N -0.26 -10.82 6.00 -48.19 -0.29 -11.11 16 27 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.07 2.38 5.07 -2.39 -0.01 2.37 16 29 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 30 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.13 6.07 1.87 -2.96 -0.01 6.07 16 33 H 0.09 5.28 5.02 -2.39 -0.01 5.27 16 34 H 0.28 14.57 8.31 -92.71 -0.77 13.80 16 35 H 0.17 5.77 8.06 -2.91 -0.02 5.74 16 36 H 0.24 3.19 7.02 -2.91 -0.02 3.17 16 37 H 0.17 1.30 6.70 -2.91 -0.02 1.28 16 38 H 0.18 0.03 8.06 -2.91 -0.02 0.01 16 39 H 0.17 0.39 8.06 -2.91 -0.02 0.36 16 40 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -85.40 340.29 6.46 -78.94 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 1.09 Total: 18.72 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: 5.82 Total: -5.09 kcal Atomic # 7 Polarization: -95.22 SS G_CDS: -2.35 Total: -97.57 kcal Atomic # 8 Polarization: -40.36 SS G_CDS: -0.07 Total: -40.43 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -0.06 Total: -1.44 kcal Total: -85.40 6.46 -78.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050601521.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.786 kcal (2) G-P(sol) polarization free energy of solvation -85.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds