Wall clock time and date at job start Fri Apr 10 2020 14:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38068 * 126.31151 * 2 1 4 4 C 1.47415 * 126.40754 * 0.03037 * 3 2 1 5 5 O 1.21612 * 120.00057 * 359.70476 * 4 3 2 6 6 N 1.34771 * 120.00114 * 179.70879 * 4 3 2 7 7 C 1.46503 * 120.00182 * 179.97438 * 6 4 3 8 8 H 1.08994 * 109.47221 * 324.99824 * 7 6 4 9 9 C 1.52998 * 109.47132 * 84.99914 * 7 6 4 10 10 C 1.50704 * 109.46948 * 205.00048 * 7 6 4 11 11 H 1.08002 * 120.00016 * 359.97438 * 10 7 6 12 12 C 1.37881 * 119.99665 * 180.02562 * 10 7 6 13 13 N 1.31513 * 119.99843 * 179.97438 * 12 10 7 14 14 Si 1.86799 * 120.00071 * 0.02562 * 12 10 7 15 15 H 1.48490 * 109.47191 * 89.99820 * 14 12 10 16 16 H 1.48502 * 109.46679 * 210.00013 * 14 12 10 17 17 H 1.48503 * 109.46901 * 329.99780 * 14 12 10 18 18 C 1.41326 * 107.17984 * 179.75949 * 3 2 1 19 19 N 1.30468 * 108.06921 * 0.24951 * 18 3 2 20 20 N 1.34540 * 126.31047 * 180.18918 * 2 1 3 21 21 C 1.40144 * 125.77189 * 0.02562 * 20 2 1 22 22 C 1.38881 * 120.05857 * 42.29242 * 21 20 2 23 23 C 1.38106 * 119.95850 * 179.97438 * 22 21 20 24 24 C 1.38282 * 120.07784 * 359.97309 * 23 22 21 25 25 C 1.38376 * 120.12449 * 0.02562 * 24 23 22 26 26 Cl 1.73603 * 119.97801 * 179.97438 * 25 24 23 27 27 C 1.38255 * 120.04126 * 359.74629 * 25 24 23 28 28 H 1.09004 * 109.47545 * 84.71289 * 1 2 3 29 29 H 1.08997 * 109.47288 * 204.71172 * 1 2 3 30 30 H 1.09002 * 109.47095 * 324.72035 * 1 2 3 31 31 H 0.97001 * 119.99711 * 359.97438 * 6 4 3 32 32 H 1.08996 * 109.47001 * 179.97438 * 9 7 6 33 33 H 1.09005 * 109.46850 * 60.00270 * 9 7 6 34 34 H 1.09001 * 109.47311 * 300.00288 * 9 7 6 35 35 H 0.96992 * 120.00238 * 179.97438 * 13 12 10 36 36 H 1.08003 * 125.96245 * 180.22101 * 18 3 2 37 37 H 1.07995 * 120.01878 * 359.95397 * 22 21 20 38 38 H 1.07993 * 119.96190 * 180.02562 * 23 22 21 39 39 H 1.08003 * 119.93692 * 180.02562 * 24 23 22 40 40 H 1.08002 * 120.04028 * 180.24975 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1126 0.0000 4 6 1.8867 2.5202 0.0006 5 8 0.7004 2.7879 -0.0042 6 7 2.8009 3.5103 0.0065 7 6 2.3658 4.9092 0.0065 8 1 1.4569 5.0070 -0.5871 9 6 2.0874 5.3567 1.4429 10 6 3.4490 5.7723 -0.5875 11 1 4.3697 5.3237 -0.9304 12 6 3.2651 7.1347 -0.6923 13 7 4.2105 7.8880 -1.2102 14 14 1.6735 7.9108 -0.0973 15 1 1.8116 8.2898 1.3318 16 1 1.3816 9.1224 -0.9048 17 1 0.5622 6.9372 -0.2461 18 6 3.6598 0.6494 0.0057 19 7 3.6356 -0.6551 0.0034 20 7 2.3037 -1.0841 -0.0036 21 6 1.8725 -2.4176 -0.0085 22 6 0.8128 -2.8031 -0.8191 23 6 0.3899 -4.1178 -0.8227 24 6 1.0208 -5.0509 -0.0206 25 6 2.0771 -4.6705 0.7883 26 17 2.8660 -5.8450 1.7943 27 6 2.5076 -3.3567 0.7924 28 1 -0.3634 0.0947 -1.0233 29 1 -0.3634 -0.9335 0.4296 30 1 -0.3633 0.8389 0.5936 31 1 3.7471 3.2967 0.0107 32 1 1.7641 6.3976 1.4430 33 1 2.9964 5.2589 2.0365 34 1 1.3039 4.7324 1.8726 35 1 4.0810 8.8464 -1.2843 36 1 4.5455 1.2674 0.0105 37 1 0.3195 -2.0751 -1.4460 38 1 -0.4339 -4.4177 -1.4534 39 1 0.6886 -6.0785 -0.0255 40 1 3.3346 -3.0607 1.4208 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064318190.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:50:58 Heat of formation + Delta-G solvation = 43.591338 kcal Electronic energy + Delta-G solvation = -25059.249326 eV Core-core repulsion = 21286.873402 eV Total energy + Delta-G solvation = -3772.375923 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 333.098 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.91628 -40.52858 -39.91419 -37.60379 -36.78033 -34.95411 -34.27213 -33.36434 -32.01052 -31.74130 -30.11484 -28.39897 -27.17999 -24.91155 -24.37918 -23.59321 -22.43095 -21.32273 -20.91275 -19.29817 -18.61276 -17.81698 -17.40568 -17.14119 -16.91234 -16.33294 -16.19757 -15.76029 -15.54511 -15.32826 -14.84243 -14.82370 -14.76479 -14.52786 -14.20111 -14.05297 -13.84627 -13.57072 -13.35898 -13.15944 -12.94425 -12.75691 -12.73198 -12.66747 -12.10561 -12.06879 -12.01820 -11.57123 -11.23801 -11.15742 -10.84320 -10.75934 -10.13970 -10.02570 -9.81242 -9.43561 -8.34633 -6.40361 -0.39599 -0.02838 0.57026 0.86409 1.06257 1.21631 1.30989 1.38722 1.48592 2.29658 2.35047 2.48314 2.56390 3.01915 3.41262 3.47389 3.67815 3.81440 3.87458 3.94320 4.05116 4.16864 4.29075 4.41671 4.51007 4.57690 4.61624 4.62127 4.74584 4.81855 4.94467 5.01573 5.06500 5.06773 5.14410 5.29920 5.38324 5.44505 5.48067 5.69401 5.92341 6.17558 6.34321 6.61447 6.93405 7.22674 7.48420 8.80632 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.029859 B = 0.002279 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.517553 B =12282.607023 C =12696.443970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.163 3.837 3 C -0.304 4.304 4 C 0.586 3.414 5 O -0.588 6.588 6 N -0.697 5.697 7 C 0.245 3.755 8 H 0.027 0.973 9 C -0.155 4.155 10 C -0.532 4.532 11 H 0.057 0.943 12 C 0.027 3.973 13 N -0.935 5.935 14 Si 0.940 3.060 15 H -0.261 1.261 16 H -0.294 1.294 17 H -0.259 1.259 18 C 0.097 3.903 19 N -0.312 5.312 20 N -0.320 5.320 21 C 0.133 3.867 22 C -0.119 4.119 23 C -0.072 4.072 24 C -0.099 4.099 25 C -0.028 4.028 26 Cl -0.060 7.060 27 C -0.111 4.111 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.405 0.595 32 H 0.041 0.959 33 H 0.063 0.937 34 H 0.047 0.953 35 H 0.270 0.730 36 H 0.217 0.783 37 H 0.151 0.849 38 H 0.183 0.817 39 H 0.169 0.831 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.671 -29.455 3.458 30.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.033 3.967 3 C -0.318 4.318 4 C 0.375 3.625 5 O -0.471 6.471 6 N -0.345 5.345 7 C 0.141 3.859 8 H 0.044 0.956 9 C -0.213 4.213 10 C -0.570 4.570 11 H 0.075 0.925 12 C -0.172 4.172 13 N -0.574 5.574 14 Si 0.767 3.233 15 H -0.186 1.186 16 H -0.221 1.221 17 H -0.183 1.183 18 C -0.091 4.091 19 N -0.129 5.129 20 N -0.094 5.094 21 C 0.043 3.957 22 C -0.139 4.139 23 C -0.091 4.091 24 C -0.118 4.118 25 C -0.055 4.055 26 Cl -0.031 7.031 27 C -0.131 4.131 28 H 0.122 0.878 29 H 0.115 0.885 30 H 0.108 0.892 31 H 0.240 0.760 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.234 0.766 37 H 0.168 0.832 38 H 0.201 0.799 39 H 0.186 0.814 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.643 -30.319 3.506 31.721 hybrid contribution 0.263 1.706 0.308 1.753 sum -8.380 -28.613 3.815 30.058 Atomic orbital electron populations 1.20819 0.84074 1.04981 1.05388 1.21946 0.96069 0.85170 0.93509 1.20080 0.93877 0.93022 1.24799 1.17455 0.85328 0.84261 0.75504 1.90665 1.17702 1.84914 1.53829 1.45775 1.09734 1.05821 1.73142 1.18756 0.95149 0.78722 0.93310 0.95550 1.22351 1.01007 0.99317 0.98667 1.21268 1.02499 0.92278 1.40954 0.92531 1.25573 0.99376 0.97603 0.94673 1.69978 1.35127 1.06208 1.46087 0.85990 0.80973 0.77856 0.78478 1.18641 1.22124 1.18318 1.24572 0.97939 0.91705 0.94865 1.77283 0.95725 1.13491 1.26382 1.45642 1.04287 1.03998 1.55480 1.17549 0.98335 0.80028 0.99813 1.21543 0.96081 0.98844 0.97412 1.21432 0.99822 0.90102 0.97706 1.21599 0.93379 1.02545 0.94266 1.20805 0.97507 0.89565 0.97654 1.98398 1.79867 1.57002 1.67793 1.20819 1.01192 0.91747 0.99365 0.87804 0.88459 0.89204 0.76013 0.94036 0.91814 0.93389 0.92114 0.76628 0.83154 0.79929 0.81398 0.85292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.99 8.15 71.24 0.58 -1.41 16 2 C 0.16 4.38 6.82 42.10 0.29 4.66 16 3 C -0.30 -9.53 6.13 -20.14 -0.12 -9.66 16 4 C 0.59 22.47 7.78 86.66 0.67 23.14 16 5 O -0.59 -25.50 14.63 -4.07 -0.06 -25.56 16 6 N -0.70 -27.79 5.06 -449.38 -2.27 -30.07 16 7 C 0.25 11.62 2.15 44.25 0.10 11.72 16 8 H 0.03 1.39 6.64 -2.39 -0.02 1.37 16 9 C -0.16 -6.74 8.96 71.98 0.65 -6.09 16 10 C -0.53 -28.95 9.31 25.60 0.24 -28.72 16 11 H 0.06 3.27 7.98 -2.91 -0.02 3.25 16 12 C 0.03 1.54 5.45 84.66 0.46 2.00 16 13 N -0.93 -56.11 13.96 21.45 0.30 -55.81 16 14 Si 0.94 44.51 24.37 68.60 1.67 46.18 16 15 H -0.26 -11.62 6.87 99.48 0.68 -10.93 16 16 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 17 H -0.26 -12.06 6.53 99.48 0.65 -11.41 16 18 C 0.10 2.70 11.50 85.66 0.99 3.68 16 19 N -0.31 -8.87 12.33 -56.24 -0.69 -9.56 16 20 N -0.32 -8.16 3.67 -174.52 -0.64 -8.80 16 21 C 0.13 2.66 6.06 38.10 0.23 2.89 16 22 C -0.12 -1.57 8.27 22.39 0.19 -1.39 16 23 C -0.07 -0.54 10.04 22.25 0.22 -0.32 16 24 C -0.10 -0.90 9.83 22.31 0.22 -0.68 16 25 C -0.03 -0.41 6.32 22.31 0.14 -0.27 16 26 Cl -0.06 -0.87 28.95 -2.72 -0.08 -0.94 16 27 C -0.11 -2.12 9.61 22.41 0.22 -1.90 16 28 H 0.10 1.90 8.06 -2.38 -0.02 1.88 16 29 H 0.10 1.46 6.88 -2.39 -0.02 1.44 16 30 H 0.09 2.30 6.80 -2.39 -0.02 2.29 16 31 H 0.40 14.19 7.49 -92.71 -0.69 13.49 16 32 H 0.04 1.83 3.27 -2.39 -0.01 1.82 16 33 H 0.06 2.60 8.14 -2.38 -0.02 2.58 16 34 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 36 H 0.22 4.74 7.50 -2.91 -0.02 4.71 16 37 H 0.15 1.67 6.91 -2.91 -0.02 1.65 16 38 H 0.18 0.03 8.06 -2.91 -0.02 0.01 16 39 H 0.17 0.62 8.06 -2.91 -0.02 0.59 16 40 H 0.13 2.78 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -71.71 350.15 3.61 -68.10 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.32 Total: 18.79 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 5.06 Total: -2.33 kcal Atomic # 7 Polarization: -100.93 SS G_CDS: -3.31 Total: -104.24 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.06 Total: -25.56 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.67 Total: 46.18 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -0.08 Total: -0.94 kcal Total: -71.71 3.61 -68.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318190.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.690 kcal (2) G-P(sol) polarization free energy of solvation -71.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds