Wall clock time and date at job start Fri Apr 10 2020 14:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47238 * 2 1 4 4 C 1.50696 * 109.47346 * 239.99700 * 2 1 3 5 5 H 1.07998 * 120.00085 * 274.84357 * 4 2 1 6 6 C 1.37877 * 119.99747 * 94.83809 * 4 2 1 7 7 N 1.31518 * 120.00086 * 184.72653 * 6 4 2 8 8 Si 1.86795 * 120.00207 * 4.72609 * 6 4 2 9 9 H 1.48501 * 109.47242 * 94.67209 * 8 6 4 10 10 H 1.48504 * 109.47539 * 214.67077 * 8 6 4 11 11 H 1.48501 * 109.47305 * 334.67530 * 8 6 4 12 12 N 1.46503 * 109.47168 * 119.99987 * 2 1 3 13 13 C 1.46503 * 119.99924 * 59.99787 * 12 2 1 14 14 C 1.34780 * 119.99851 * 240.00317 * 12 2 1 15 15 O 1.21719 * 120.00172 * 359.85645 * 14 12 2 16 16 C 1.46462 * 119.99792 * 179.85938 * 14 12 2 17 17 C 1.36652 * 125.17494 * 171.31936 * 16 14 12 18 18 C 1.36814 * 114.72495 * 179.97438 * 17 16 14 19 19 C 1.36469 * 114.77384 * 359.97438 * 18 17 16 20 20 C 1.47766 * 125.15126 * 179.97438 * 19 18 17 21 21 C 1.39618 * 120.11615 * 359.72047 * 20 19 18 22 22 C 1.37904 * 119.87271 * 179.77289 * 21 20 19 23 23 C 1.38604 * 120.11972 * 0.53045 * 22 21 20 24 24 F 1.35101 * 119.87789 * 179.72663 * 23 22 21 25 25 C 1.38599 * 120.24218 * 359.69617 * 23 22 21 26 26 C 1.37893 * 120.12717 * 0.05435 * 25 23 22 27 27 S 1.75841 * 125.17376 * 351.54680 * 16 14 12 28 28 H 1.09000 * 109.47376 * 174.97884 * 1 2 3 29 29 H 1.09007 * 109.47359 * 294.97807 * 1 2 3 30 30 H 1.09000 * 109.46964 * 54.97567 * 1 2 3 31 31 H 0.96995 * 120.00640 * 180.02562 * 7 6 4 32 32 H 1.09006 * 109.46744 * 263.40232 * 13 12 2 33 33 H 1.08994 * 109.46927 * 23.39895 * 13 12 2 34 34 H 1.09002 * 109.46864 * 143.40649 * 13 12 2 35 35 H 1.08003 * 122.64048 * 359.97438 * 17 16 14 36 36 H 1.08000 * 122.61417 * 180.02562 * 18 17 16 37 37 H 1.07993 * 120.06389 * 0.02591 * 21 20 19 38 38 H 1.07995 * 119.94010 * 180.27988 * 22 21 20 39 39 H 1.08005 * 119.93331 * 180.02562 * 25 23 22 40 40 H 1.07997 * 120.06673 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1379 -1.7853 -1.2280 6 6 2.3571 0.0118 -2.3591 7 7 2.7064 -0.6137 -3.4620 8 14 2.3009 1.8785 -2.3218 9 1 3.6541 2.4084 -2.0164 10 1 1.8572 2.3870 -3.6446 11 1 1.3469 2.3242 -1.2747 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7931 -0.0356 2.0834 15 8 3.0893 1.1290 1.8895 16 6 3.2788 -0.7251 3.2808 17 6 4.1991 -0.2249 4.1584 18 6 4.4984 -1.0516 5.2067 19 6 3.8292 -2.2409 5.2062 20 6 3.9769 -3.3006 6.2254 21 6 4.8606 -3.1280 7.2924 22 6 4.9911 -4.1183 8.2433 23 6 4.2551 -5.2878 8.1350 24 9 4.3908 -6.2571 9.0664 25 6 3.3799 -5.4662 7.0752 26 6 3.2377 -4.4805 6.1215 27 16 2.7706 -2.3248 3.8047 28 1 -0.3634 -1.0237 -0.0899 29 1 -0.3634 0.4340 0.9316 30 1 -0.3633 0.5898 -0.8416 31 1 2.9353 -0.1057 -4.2560 32 1 0.8049 -2.1453 2.0966 33 1 1.4152 -2.5667 0.4785 34 1 2.5095 -2.6110 1.8817 35 1 4.6544 0.7465 4.0344 36 1 5.2083 -0.7834 5.9752 37 1 5.4378 -2.2191 7.3753 38 1 5.6709 -3.9841 9.0716 39 1 2.8085 -6.3794 6.9960 40 1 2.5552 -4.6204 5.2963 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065488308.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:51:51 Heat of formation + Delta-G solvation = -16.058004 kcal Electronic energy + Delta-G solvation = -24863.071908 eV Core-core repulsion = 21070.233140 eV Total energy + Delta-G solvation = -3792.838768 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 333.094 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.21949 -39.53993 -39.30737 -37.17070 -35.47310 -32.92028 -32.07755 -31.59617 -30.62149 -28.06133 -26.60843 -25.37734 -24.93877 -23.58248 -22.32111 -21.70754 -19.44771 -18.85567 -17.96353 -17.76659 -17.00688 -16.40380 -16.31495 -15.91651 -15.49495 -15.38563 -14.88413 -14.77803 -14.12352 -13.98883 -13.66892 -13.47582 -13.38598 -13.02591 -12.82089 -12.69056 -12.53217 -12.40384 -12.27998 -12.21287 -11.79876 -11.53146 -11.42831 -11.13295 -10.82091 -10.58061 -10.37422 -9.78597 -9.66912 -9.54262 -9.46140 -9.25532 -8.66407 -8.53628 -8.11205 -7.74529 -6.23342 -4.26535 0.00303 0.84848 1.17649 1.46932 1.87226 2.48856 3.25681 3.34531 3.35387 3.41809 3.57799 3.72483 3.88233 4.28679 4.33035 4.36810 4.47433 4.80966 4.89765 4.93323 5.17620 5.24618 5.38757 5.40110 5.49166 5.54364 5.67214 5.72675 5.80199 5.90322 6.06211 6.08388 6.17005 6.26606 6.33142 6.38913 6.47497 6.50465 6.84037 6.99247 7.34247 7.53205 7.97254 8.37379 8.72100 8.77909 9.38408 10.88230 Molecular weight = 333.09amu Principal moments of inertia in cm(-1) A = 0.026978 B = 0.002586 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.620553 B =10826.534722 C =11302.974622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.220 3.780 3 H 0.071 0.929 4 C -0.528 4.528 5 H 0.079 0.921 6 C 0.081 3.919 7 N -0.889 5.889 8 Si 0.873 3.127 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.259 1.259 12 N -0.579 5.579 13 C 0.068 3.932 14 C 0.572 3.428 15 O -0.542 6.542 16 C -0.231 4.231 17 C -0.071 4.071 18 C -0.129 4.129 19 C -0.185 4.185 20 C -0.015 4.015 21 C -0.076 4.076 22 C -0.148 4.148 23 C 0.094 3.906 24 F -0.140 7.140 25 C -0.145 4.145 26 C -0.085 4.085 27 S 0.206 5.794 28 H 0.050 0.950 29 H 0.027 0.973 30 H 0.057 0.943 31 H 0.267 0.733 32 H 0.055 0.945 33 H 0.103 0.897 34 H 0.063 0.937 35 H 0.151 0.849 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.136 -8.251 21.928 23.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.120 3.880 3 H 0.088 0.912 4 C -0.566 4.566 5 H 0.097 0.903 6 C -0.123 4.123 7 N -0.525 5.525 8 Si 0.700 3.300 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.183 1.183 12 N -0.309 5.309 13 C -0.078 4.078 14 C 0.359 3.641 15 O -0.422 6.422 16 C -0.352 4.352 17 C -0.103 4.103 18 C -0.159 4.159 19 C -0.302 4.302 20 C -0.017 4.017 21 C -0.096 4.096 22 C -0.166 4.166 23 C 0.074 3.926 24 F -0.119 7.119 25 C -0.164 4.164 26 C -0.104 4.104 27 S 0.477 5.523 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.121 0.879 34 H 0.080 0.920 35 H 0.169 0.831 36 H 0.158 0.842 37 H 0.155 0.845 38 H 0.156 0.844 39 H 0.157 0.843 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.292 -8.730 21.021 22.763 hybrid contribution 1.154 1.637 0.613 2.094 sum 1.446 -7.093 21.633 22.812 Atomic orbital electron populations 1.22220 0.97990 1.01009 0.99306 1.19499 0.90999 0.95248 0.82215 0.91155 1.21090 1.45115 0.95690 0.94704 0.90298 1.24953 0.93596 0.98615 0.95179 1.69884 1.44766 1.36143 1.01730 0.86889 0.79714 0.85991 0.77422 1.19819 1.21138 1.18344 1.48291 1.48454 1.11215 1.22989 1.21863 0.99126 0.83636 1.03161 1.17051 0.79400 0.86182 0.81507 1.90781 1.58803 1.16173 1.76479 1.24872 1.07635 0.99499 1.03205 1.20430 0.96179 1.01088 0.92622 1.20329 1.02342 0.93035 1.00195 1.24276 1.06436 0.98098 1.01391 1.18143 0.97180 0.92599 0.93785 1.21096 0.97113 0.98884 0.92539 1.21077 1.01343 0.93006 1.01215 1.17816 0.99138 0.86964 0.88675 1.91505 1.94820 1.61641 1.63910 1.21046 0.99897 1.01041 0.94372 1.21110 0.98634 0.92123 0.98571 1.84608 1.41148 1.13596 1.12968 0.93073 0.95376 0.92399 0.92287 0.92691 0.87881 0.91960 0.83150 0.84174 0.84490 0.84395 0.84289 0.84812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.10 37.16 0.34 -2.64 16 2 C 0.22 5.19 2.26 -69.08 -0.16 5.03 16 3 H 0.07 1.83 3.84 -51.93 -0.20 1.63 16 4 C -0.53 -14.12 8.69 -34.44 -0.30 -14.41 16 5 H 0.08 2.21 6.92 -52.49 -0.36 1.85 16 6 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 7 N -0.89 -26.19 13.96 55.43 0.77 -25.41 16 8 Si 0.87 21.70 27.30 -169.99 -4.64 17.06 16 9 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.26 -6.23 6.38 56.52 0.36 -5.87 16 12 N -0.58 -11.95 2.75 -176.88 -0.49 -12.44 16 13 C 0.07 1.09 7.99 59.85 0.48 1.57 16 14 C 0.57 11.91 7.63 -12.95 -0.10 11.81 16 15 O -0.54 -13.15 16.16 5.17 0.08 -13.07 16 16 C -0.23 -3.78 6.22 -36.84 -0.23 -4.01 16 17 C -0.07 -1.01 9.88 -40.67 -0.40 -1.41 16 18 C -0.13 -1.48 9.66 -40.73 -0.39 -1.87 16 19 C -0.18 -2.11 6.41 -36.33 -0.23 -2.34 16 20 C -0.02 -0.15 5.87 -104.97 -0.62 -0.77 16 21 C -0.08 -0.64 9.54 -39.19 -0.37 -1.01 16 22 C -0.15 -1.17 10.01 -39.57 -0.40 -1.57 16 23 C 0.09 0.84 7.30 -39.31 -0.29 0.55 16 24 F -0.14 -1.34 17.26 2.25 0.04 -1.30 16 25 C -0.14 -1.20 10.01 -39.57 -0.40 -1.60 16 26 C -0.09 -0.76 9.59 -39.19 -0.38 -1.14 16 27 S 0.21 2.55 16.95 -107.50 -1.82 0.73 16 28 H 0.05 0.96 7.84 -51.93 -0.41 0.55 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.05 0.73 7.74 -51.93 -0.40 0.33 16 33 H 0.10 1.73 6.65 -51.93 -0.35 1.39 16 34 H 0.06 0.91 4.62 -23.06 -0.11 0.80 16 35 H 0.15 2.11 8.05 -52.48 -0.42 1.68 16 36 H 0.14 1.21 6.91 -52.49 -0.36 0.84 16 37 H 0.14 0.89 6.76 -52.49 -0.35 0.53 16 38 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 40 H 0.13 1.04 7.27 -52.49 -0.38 0.66 16 LS Contribution 347.92 15.07 5.24 5.24 Total: -1.00 -32.15 347.92 -8.56 -40.71 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -4.21 Total: 0.13 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -3.54 Total: -11.65 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.29 Total: -37.85 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.08 Total: -13.07 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.64 Total: 17.06 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -1.82 Total: 0.73 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.15 -8.56 -40.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065488308.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.651 kcal (2) G-P(sol) polarization free energy of solvation -32.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds