Wall clock time and date at job start Fri Apr 10 2020 14:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48499 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47375 * 300.00329 * 3 2 1 6 6 H 1.48506 * 109.47301 * 60.00327 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38304 * 120.07204 * 0.53100 * 12 11 10 14 14 C 1.50695 * 119.93307 * 179.74764 * 13 12 11 15 15 N 1.46508 * 109.47103 * 270.02170 * 14 13 12 16 16 C 1.34769 * 120.00011 * 179.97438 * 15 14 13 17 17 O 1.21277 * 120.00264 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99776 * 179.97438 * 16 15 14 19 19 O 1.42898 * 109.47255 * 180.02562 * 18 16 15 20 20 C 1.42898 * 114.00300 * 180.02562 * 19 18 16 21 21 C 1.53000 * 109.47324 * 179.97438 * 20 19 18 22 22 F 1.39906 * 109.46653 * 60.00278 * 21 20 19 23 23 F 1.39899 * 109.47485 * 179.97438 * 21 20 19 24 24 F 1.39901 * 109.47353 * 300.00675 * 21 20 19 25 25 C 1.38299 * 120.13445 * 359.76820 * 13 12 11 26 26 C 1.38101 * 120.07425 * 359.95492 * 25 13 12 27 27 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 29 29 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 30 30 H 1.08998 * 109.47086 * 30.01537 * 14 13 12 31 31 H 1.08996 * 109.47192 * 150.02113 * 14 13 12 32 32 H 0.97001 * 119.99475 * 0.02562 * 15 14 13 33 33 H 1.08998 * 109.47596 * 300.00954 * 18 16 15 34 34 H 1.09005 * 109.46667 * 60.00766 * 18 16 15 35 35 H 1.08996 * 109.47425 * 300.00342 * 20 19 18 36 36 H 1.09005 * 109.47005 * 60.00378 * 20 19 18 37 37 H 1.07999 * 119.96503 * 179.97438 * 25 13 12 38 38 H 1.07992 * 120.03608 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5687 -5.8202 -0.3264 14 6 4.3849 -7.0813 -0.4459 15 7 4.6433 -7.6242 0.8901 16 6 5.3595 -8.7572 1.0302 17 8 5.7904 -9.3273 0.0503 18 6 5.6258 -9.3153 2.4045 19 8 6.3997 -10.5112 2.2913 20 6 6.7087 -11.1244 3.5445 21 6 7.5347 -12.3895 3.3033 22 9 8.7216 -12.0527 2.6437 23 9 7.8377 -12.9896 4.5302 24 9 6.8006 -13.2827 2.5154 25 6 4.2024 -4.5970 -0.2043 26 6 3.4573 -3.4394 -0.0951 27 1 -0.4850 0.8400 0.0004 28 1 0.3579 -4.7892 -0.2301 29 1 1.6954 -6.8451 -0.4339 30 1 3.8358 -7.8149 -1.0361 31 1 5.3320 -6.8560 -0.9360 32 1 4.2983 -7.1684 1.6738 33 1 6.1753 -8.5817 2.9944 34 1 4.6787 -9.5401 2.8951 35 1 7.2802 -10.4284 4.1585 36 1 5.7839 -11.3872 4.0582 37 1 5.2812 -4.5470 -0.1945 38 1 3.9527 -2.4846 -0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067927647.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:50:42 Heat of formation + Delta-G solvation = -235.867070 kcal Electronic energy + Delta-G solvation = -26674.132972 eV Core-core repulsion = 21874.780167 eV Total energy + Delta-G solvation = -4799.352805 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.102 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.47523 -48.04501 -47.91065 -40.04434 -39.17618 -38.18103 -36.88673 -34.52946 -32.44195 -31.16080 -30.35700 -30.06613 -27.84203 -25.78811 -24.53712 -23.72433 -22.12332 -20.82559 -20.72609 -19.05041 -19.01532 -18.49585 -18.13653 -17.35694 -17.06799 -16.84889 -16.76985 -15.61874 -15.27856 -14.84626 -14.83479 -14.71347 -14.56084 -14.44022 -14.37336 -14.09368 -14.08890 -14.02367 -13.71042 -13.59224 -13.18003 -13.00068 -12.85359 -12.63145 -12.12003 -12.04205 -11.73546 -11.47168 -11.04330 -10.85626 -10.75769 -10.55586 -10.51811 -9.99872 -9.48705 -9.11534 -8.96847 -8.35641 -7.39718 -6.58407 -4.17310 1.79287 2.05551 2.06622 2.44600 2.65480 3.03900 3.06193 3.11639 3.27572 3.49813 3.53408 3.85695 4.09046 4.35280 4.41813 4.47161 4.53285 4.66106 4.71612 4.95834 5.09273 5.17149 5.34692 5.58942 5.73121 5.82923 6.05286 6.08480 6.28081 6.36182 6.53160 6.73519 6.89219 7.07396 7.20103 7.29105 7.41872 7.64799 7.86227 8.08257 8.86979 9.54471 10.59027 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.029481 B = 0.001649 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.520327 B =16975.699033 C =17271.714934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.040 3.960 3 Si 0.943 3.057 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.394 4.394 8 H 0.094 0.906 9 O -0.173 6.173 10 C 0.161 3.839 11 C -0.195 4.195 12 C -0.054 4.054 13 C -0.217 4.217 14 C 0.181 3.819 15 N -0.718 5.718 16 C 0.510 3.490 17 O -0.522 6.522 18 C 0.044 3.956 19 O -0.348 6.348 20 C 0.016 3.984 21 C 0.463 3.537 22 F -0.174 7.174 23 F -0.177 7.177 24 F -0.174 7.174 25 C -0.050 4.050 26 C -0.237 4.237 27 H 0.271 0.729 28 H 0.119 0.881 29 H 0.113 0.887 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.403 0.597 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.446 -18.305 9.377 23.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.470 4.470 8 H 0.112 0.888 9 O -0.075 6.075 10 C 0.106 3.894 11 C -0.215 4.215 12 C -0.072 4.072 13 C -0.219 4.219 14 C 0.059 3.941 15 N -0.372 5.372 16 C 0.294 3.706 17 O -0.398 6.398 18 C -0.035 4.035 19 O -0.266 6.266 20 C -0.063 4.063 21 C 0.409 3.591 22 F -0.155 7.155 23 F -0.159 7.159 24 F -0.155 7.155 25 C -0.069 4.069 26 C -0.257 4.257 27 H 0.081 0.919 28 H 0.137 0.863 29 H 0.131 0.869 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.237 0.763 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.126 0.874 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 11.401 -18.596 8.474 23.401 hybrid contribution 0.320 1.042 0.660 1.274 sum 11.721 -17.555 9.134 23.000 Atomic orbital electron populations 1.70040 1.06022 1.27844 1.45300 1.25336 0.95877 0.98985 0.96298 0.85619 0.79147 0.80144 0.78371 1.19022 1.20025 1.20052 1.21413 0.91910 0.80673 1.52977 0.88817 1.83977 1.34567 1.11595 1.77352 1.19449 0.90328 0.88058 0.91570 1.20219 0.99706 0.90268 1.11287 1.20538 0.92738 0.96868 0.97101 1.19176 0.93543 0.93402 1.15743 1.20005 0.98770 0.92678 0.82614 1.46233 1.54711 1.25523 1.10732 1.20036 0.79087 0.81227 0.90265 1.90759 1.49987 1.58988 1.40033 1.22375 0.96930 0.87408 0.96806 1.88029 1.73310 1.39864 1.25378 1.23575 1.00851 0.92715 0.89188 1.20087 0.79223 0.85711 0.74102 1.93238 1.48818 1.92187 1.81278 1.93214 1.93607 1.85138 1.43928 1.93237 1.76758 1.70645 1.74870 1.20648 0.98401 0.91653 0.96169 1.21167 0.93772 0.98985 1.11744 0.91869 0.86338 0.86914 0.91314 0.91357 0.76276 0.89350 0.89340 0.88244 0.88251 0.87355 0.85382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.17 13.67 55.48 0.76 -23.41 16 2 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 3 Si 0.94 19.61 29.55 -169.99 -5.02 14.58 16 4 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 5 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.28 -5.61 7.11 56.52 0.40 -5.20 16 7 C -0.39 -10.45 9.49 30.89 0.29 -10.15 16 8 H 0.09 2.29 5.20 -52.49 -0.27 2.02 16 9 O -0.17 -4.66 9.76 0.05 0.00 -4.66 16 10 C 0.16 3.60 6.65 -39.11 -0.26 3.34 16 11 C -0.20 -3.76 9.99 -39.39 -0.39 -4.15 16 12 C -0.05 -0.85 9.69 -39.61 -0.38 -1.23 16 13 C -0.22 -3.23 5.25 -104.58 -0.55 -3.78 16 14 C 0.18 2.33 5.80 -5.19 -0.03 2.30 16 15 N -0.72 -7.67 5.55 -61.47 -0.34 -8.01 16 16 C 0.51 5.96 7.91 -10.99 -0.09 5.87 16 17 O -0.52 -8.65 16.50 -14.35 -0.24 -8.89 16 18 C 0.04 0.33 6.42 36.01 0.23 0.56 16 19 O -0.35 -3.39 9.76 -55.14 -0.54 -3.93 16 20 C 0.02 0.09 5.90 37.16 0.22 0.31 16 21 C 0.46 3.73 3.32 37.16 0.12 3.85 16 22 F -0.17 -1.75 17.26 2.25 0.04 -1.71 16 23 F -0.18 -1.30 17.32 2.25 0.04 -1.27 16 24 F -0.17 -1.74 17.26 2.25 0.04 -1.70 16 25 C -0.05 -0.81 9.69 -39.61 -0.38 -1.19 16 26 C -0.24 -4.70 9.17 -39.39 -0.36 -5.06 16 27 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.12 2.22 8.06 -52.49 -0.42 1.79 16 29 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 30 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 31 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 32 H 0.40 3.45 8.46 -40.82 -0.35 3.10 16 33 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.13 2.57 5.64 -52.49 -0.30 2.27 16 LS Contribution 353.23 15.07 5.32 5.32 Total: -1.00 -33.22 353.23 -5.47 -38.69 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -3.85 Total: 3.37 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: -1.68 Total: -8.39 kcal Atomic # 7 Polarization: -31.84 SS G_CDS: 0.42 Total: -31.42 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.77 Total: -17.47 kcal Atomic # 9 Polarization: -4.79 SS G_CDS: 0.12 Total: -4.68 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.22 -5.47 -38.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067927647.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -197.182 kcal (2) G-P(sol) polarization free energy of solvation -33.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds