Wall clock time and date at job start Fri Apr 10 2020 14:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48499 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47375 * 300.00329 * 3 2 1 6 6 H 1.48506 * 109.47301 * 60.00327 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38304 * 120.07204 * 0.53100 * 12 11 10 14 14 C 1.50695 * 119.93307 * 179.74764 * 13 12 11 15 15 N 1.46508 * 109.47103 * 270.02170 * 14 13 12 16 16 C 1.34769 * 120.00011 * 179.97438 * 15 14 13 17 17 O 1.21277 * 120.00264 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99776 * 179.97438 * 16 15 14 19 19 O 1.42898 * 109.47255 * 180.02562 * 18 16 15 20 20 C 1.42898 * 114.00300 * 180.02562 * 19 18 16 21 21 C 1.53000 * 109.47324 * 179.97438 * 20 19 18 22 22 F 1.39906 * 109.46653 * 60.00278 * 21 20 19 23 23 F 1.39899 * 109.47485 * 179.97438 * 21 20 19 24 24 F 1.39901 * 109.47353 * 300.00675 * 21 20 19 25 25 C 1.38299 * 120.13445 * 359.76820 * 13 12 11 26 26 C 1.38101 * 120.07425 * 359.95492 * 25 13 12 27 27 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 29 29 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 30 30 H 1.08998 * 109.47086 * 30.01537 * 14 13 12 31 31 H 1.08996 * 109.47192 * 150.02113 * 14 13 12 32 32 H 0.97001 * 119.99475 * 0.02562 * 15 14 13 33 33 H 1.08998 * 109.47596 * 300.00954 * 18 16 15 34 34 H 1.09005 * 109.46667 * 60.00766 * 18 16 15 35 35 H 1.08996 * 109.47425 * 300.00342 * 20 19 18 36 36 H 1.09005 * 109.47005 * 60.00378 * 20 19 18 37 37 H 1.07999 * 119.96503 * 179.97438 * 25 13 12 38 38 H 1.07992 * 120.03608 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5687 -5.8202 -0.3264 14 6 4.3849 -7.0813 -0.4459 15 7 4.6433 -7.6242 0.8901 16 6 5.3595 -8.7572 1.0302 17 8 5.7904 -9.3273 0.0503 18 6 5.6258 -9.3153 2.4045 19 8 6.3997 -10.5112 2.2913 20 6 6.7087 -11.1244 3.5445 21 6 7.5347 -12.3895 3.3033 22 9 8.7216 -12.0527 2.6437 23 9 7.8377 -12.9896 4.5302 24 9 6.8006 -13.2827 2.5154 25 6 4.2024 -4.5970 -0.2043 26 6 3.4573 -3.4394 -0.0951 27 1 -0.4850 0.8400 0.0004 28 1 0.3579 -4.7892 -0.2301 29 1 1.6954 -6.8451 -0.4339 30 1 3.8358 -7.8149 -1.0361 31 1 5.3320 -6.8560 -0.9360 32 1 4.2983 -7.1684 1.6738 33 1 6.1753 -8.5817 2.9944 34 1 4.6787 -9.5401 2.8951 35 1 7.2802 -10.4284 4.1585 36 1 5.7839 -11.3872 4.0582 37 1 5.2812 -4.5470 -0.1945 38 1 3.9527 -2.4846 -0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067927647.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:50:41 Heat of formation + Delta-G solvation = -258.724472 kcal Electronic energy + Delta-G solvation = -26675.124143 eV Core-core repulsion = 21874.780167 eV Total energy + Delta-G solvation = -4800.343976 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.102 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.10387 -48.65572 -48.60026 -41.06495 -40.59893 -38.94179 -38.35001 -35.66891 -34.27807 -32.03351 -31.79629 -31.05104 -28.70354 -27.48098 -25.80673 -24.25806 -23.63789 -22.19203 -21.68891 -19.87610 -19.65529 -19.63655 -19.18659 -18.84251 -17.87099 -17.73291 -17.36058 -16.52263 -16.50707 -16.28313 -15.82566 -15.78917 -15.53412 -15.46996 -15.38267 -15.13300 -15.03808 -14.81954 -14.77364 -14.75279 -14.39518 -14.24738 -13.73757 -13.70331 -13.47573 -13.09828 -13.04237 -12.61004 -12.52590 -12.33866 -12.24842 -12.08638 -11.19271 -11.01629 -11.00209 -10.78252 -10.09573 -9.80062 -9.00472 -8.48296 -6.16272 0.53329 0.58738 1.35397 1.36596 1.44286 1.54204 1.59540 1.98328 2.17065 2.59289 2.82704 2.93260 3.01115 3.17240 3.49975 3.54771 3.76130 3.90312 4.03620 4.12426 4.12594 4.18498 4.22908 4.31275 4.46861 4.57897 4.76602 4.81787 5.05203 5.15189 5.27616 5.38487 5.53504 5.65303 5.70171 5.75692 6.02032 6.16927 6.57886 6.96891 7.24119 7.76342 8.74672 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.029481 B = 0.001649 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.520327 B =16975.699033 C =17271.714934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.022 4.022 3 Si 1.018 2.982 4 H -0.250 1.250 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.412 4.412 8 H 0.104 0.896 9 O -0.230 6.230 10 C 0.122 3.878 11 C -0.205 4.205 12 C -0.043 4.043 13 C -0.181 4.181 14 C 0.185 3.815 15 N -0.709 5.709 16 C 0.507 3.493 17 O -0.578 6.578 18 C 0.048 3.952 19 O -0.388 6.388 20 C 0.018 3.982 21 C 0.455 3.545 22 F -0.191 7.191 23 F -0.174 7.174 24 F -0.190 7.190 25 C -0.045 4.045 26 C -0.244 4.244 27 H 0.273 0.727 28 H 0.115 0.885 29 H 0.148 0.852 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.416 0.584 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.140 0.860 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.410 -19.749 10.740 26.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.173 1.173 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.488 4.488 8 H 0.122 0.878 9 O -0.136 6.136 10 C 0.071 3.929 11 C -0.224 4.224 12 C -0.061 4.061 13 C -0.182 4.182 14 C 0.062 3.938 15 N -0.362 5.362 16 C 0.294 3.706 17 O -0.457 6.457 18 C -0.030 4.030 19 O -0.307 6.307 20 C -0.059 4.059 21 C 0.401 3.599 22 F -0.172 7.172 23 F -0.156 7.156 24 F -0.172 7.172 25 C -0.063 4.063 26 C -0.263 4.263 27 H 0.082 0.918 28 H 0.133 0.867 29 H 0.166 0.834 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.253 0.747 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.158 0.842 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 13.391 -20.085 9.872 26.080 hybrid contribution -0.132 1.048 0.224 1.080 sum 13.259 -19.036 10.096 25.301 Atomic orbital electron populations 1.70180 1.08014 1.28782 1.48682 1.26576 0.96824 1.02758 0.95869 0.84535 0.78338 0.74936 0.78472 1.17346 1.19629 1.19370 1.21868 0.92575 0.81309 1.53043 0.87831 1.83948 1.36111 1.12691 1.80823 1.20013 0.91659 0.87950 0.93248 1.20455 1.00098 0.90432 1.11415 1.20888 0.93054 0.96996 0.95152 1.19457 0.93404 0.93981 1.11394 1.19863 0.98390 0.91425 0.84097 1.45992 1.54503 1.25517 1.10231 1.20831 0.77691 0.80507 0.91596 1.90744 1.52161 1.60504 1.42284 1.22496 0.99051 0.87544 0.93956 1.87957 1.74020 1.40897 1.27861 1.23802 1.02263 0.91710 0.88133 1.20599 0.78944 0.86598 0.73726 1.93201 1.49980 1.92296 1.81744 1.93215 1.93610 1.85278 1.43483 1.93200 1.77042 1.71475 1.75478 1.20946 0.99844 0.90716 0.94813 1.21249 0.92987 1.00105 1.11983 0.91825 0.86719 0.83399 0.90994 0.91251 0.74653 0.85884 0.85808 0.85180 0.85159 0.84235 0.86251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.66 13.67 21.62 0.30 -54.37 16 2 C -0.02 -1.23 5.49 84.84 0.47 -0.76 16 3 Si 1.02 41.19 29.55 68.60 2.03 43.22 16 4 H -0.25 -9.28 7.11 99.48 0.71 -8.57 16 5 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 6 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 7 C -0.41 -22.87 9.49 67.92 0.64 -22.23 16 8 H 0.10 5.24 5.20 -2.91 -0.02 5.22 16 9 O -0.23 -13.11 9.76 -22.72 -0.22 -13.34 16 10 C 0.12 5.61 6.65 22.58 0.15 5.76 16 11 C -0.20 -7.82 9.99 22.39 0.22 -7.60 16 12 C -0.04 -1.22 9.69 22.25 0.22 -1.00 16 13 C -0.18 -4.74 5.25 -19.84 -0.10 -4.85 16 14 C 0.19 4.04 5.80 85.63 0.50 4.53 16 15 N -0.71 -12.15 5.55 -466.80 -2.59 -14.74 16 16 C 0.51 10.12 7.91 87.66 0.69 10.81 16 17 O -0.58 -18.06 16.50 16.01 0.26 -17.79 16 18 C 0.05 0.49 6.42 71.24 0.46 0.94 16 19 O -0.39 -6.34 9.76 -129.94 -1.27 -7.61 16 20 C 0.02 0.15 5.90 71.98 0.42 0.57 16 21 C 0.46 6.54 3.32 71.98 0.24 6.78 16 22 F -0.19 -3.66 17.26 44.97 0.78 -2.89 16 23 F -0.17 -2.24 17.32 44.97 0.78 -1.46 16 24 F -0.19 -3.65 17.26 44.97 0.78 -2.87 16 25 C -0.04 -1.33 9.69 22.25 0.22 -1.11 16 26 C -0.24 -9.57 9.17 22.39 0.21 -9.37 16 27 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 28 H 0.11 4.39 8.06 -2.91 -0.02 4.36 16 29 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 30 H 0.07 1.61 8.08 -2.39 -0.02 1.59 16 31 H 0.07 1.58 8.08 -2.39 -0.02 1.57 16 32 H 0.42 5.09 8.46 -92.71 -0.78 4.31 16 33 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.12 0.41 8.14 -2.38 -0.02 0.39 16 35 H 0.13 0.21 8.14 -2.39 -0.02 0.19 16 36 H 0.13 0.20 8.14 -2.38 -0.02 0.18 16 37 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 38 H 0.12 4.83 5.64 -2.91 -0.02 4.82 16 Total: -1.00 -79.49 353.23 5.51 -73.98 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.35 Total: 15.38 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: 4.33 Total: -17.52 kcal Atomic # 7 Polarization: -66.81 SS G_CDS: -2.29 Total: -69.11 kcal Atomic # 8 Polarization: -37.51 SS G_CDS: -1.23 Total: -38.74 kcal Atomic # 9 Polarization: -9.55 SS G_CDS: 2.33 Total: -7.22 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Total: -79.49 5.51 -73.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067927647.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -184.741 kcal (2) G-P(sol) polarization free energy of solvation -79.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -264.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -258.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds