Wall clock time and date at job start Fri Apr 10 2020 14:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86797 * 120.00031 * 2 1 4 4 H 1.48498 * 109.47076 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47258 * 299.99636 * 3 2 1 6 6 H 1.48496 * 109.47310 * 59.99519 * 3 2 1 7 7 C 1.38948 * 119.99637 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99448 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00505 * 0.02562 * 7 2 1 10 10 C 1.34773 * 120.00159 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00304 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99681 * 180.02562 * 10 9 7 13 13 H 1.08997 * 109.47375 * 55.00586 * 12 10 9 14 14 O 1.42909 * 109.46868 * 175.00684 * 12 10 9 15 15 C 1.35947 * 116.99851 * 204.60635 * 14 12 10 16 16 C 1.38725 * 120.01854 * 174.36410 * 15 14 12 17 17 C 1.38162 * 120.01250 * 179.71628 * 16 15 14 18 18 C 1.38412 * 120.05441 * 0.55700 * 17 16 15 19 19 F 1.35096 * 119.98530 * 179.74423 * 18 17 16 20 20 C 1.38657 * 120.03908 * 359.72013 * 18 17 16 21 21 F 1.35099 * 120.00707 * 179.97438 * 20 18 17 22 22 C 1.38361 * 119.98501 * 359.97438 * 20 18 17 23 23 C 1.50699 * 109.47615 * 295.00117 * 12 10 9 24 24 C 1.38242 * 120.00173 * 279.73333 * 23 12 10 25 25 C 1.38235 * 119.99757 * 179.78184 * 24 23 12 26 26 C 1.38233 * 119.99876 * 0.44240 * 25 24 23 27 27 C 1.38228 * 120.00190 * 359.81175 * 26 25 24 28 28 C 1.38230 * 120.00493 * 359.97438 * 27 26 25 29 29 H 0.97000 * 119.99694 * 0.02562 * 1 2 3 30 30 H 0.97004 * 119.99501 * 0.02562 * 9 7 2 31 31 H 1.07994 * 119.99231 * 359.97438 * 16 15 14 32 32 H 1.08000 * 119.97471 * 180.25272 * 17 16 15 33 33 H 1.07999 * 120.02312 * 180.02562 * 22 20 18 34 34 H 1.07998 * 119.99899 * 359.97438 * 24 23 12 35 35 H 1.07998 * 119.99554 * 180.27145 * 25 24 23 36 36 H 1.08002 * 119.99693 * 179.82782 * 26 25 24 37 37 H 1.08011 * 120.00139 * 180.02562 * 27 26 25 38 38 H 1.08001 * 120.00680 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8894 2.3965 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5579 0.0010 12 6 1.2437 -4.8629 0.0000 13 1 0.5520 -4.8827 -0.8421 14 8 2.1680 -5.9465 -0.1172 15 6 1.6934 -7.1088 -0.6388 16 6 2.5606 -8.1621 -0.8896 17 6 2.0772 -9.3453 -1.4143 18 6 0.7295 -9.4771 -1.7009 19 9 0.2593 -10.6329 -2.2186 20 6 -0.1383 -8.4237 -1.4564 21 9 -1.4536 -8.5529 -1.7368 22 6 0.3430 -7.2403 -0.9251 23 6 0.4719 -4.9980 1.2873 24 6 1.1145 -5.4154 2.4379 25 6 0.4075 -5.5350 3.6197 26 6 -0.9440 -5.2461 3.6488 27 6 -1.5876 -4.8338 2.4971 28 6 -0.8798 -4.7099 1.3163 29 1 -0.4850 0.8401 -0.0004 30 1 0.3534 -2.3906 -0.0002 31 1 3.6131 -8.0586 -0.6709 32 1 2.7523 -10.1664 -1.6055 33 1 -0.3325 -6.4196 -0.7341 34 1 2.1696 -5.6450 2.4142 35 1 0.9105 -5.8568 4.5196 36 1 -1.4969 -5.3422 4.5716 37 1 -2.6435 -4.6076 2.5200 38 1 -1.3826 -4.3874 0.4165 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071884650.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:50:38 Heat of formation + Delta-G solvation = -105.649929 kcal Electronic energy + Delta-G solvation = -27940.003540 eV Core-core repulsion = 23577.066598 eV Total energy + Delta-G solvation = -4362.936941 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.096 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.51708 -48.58541 -40.68244 -38.97094 -38.01907 -36.87647 -34.08366 -32.35020 -31.18722 -30.98403 -30.72190 -29.53855 -27.23330 -24.84483 -23.36084 -22.79757 -22.36178 -21.59840 -19.65734 -18.69667 -18.18954 -17.61470 -17.35408 -16.95525 -16.45739 -16.31124 -15.85948 -15.58338 -15.01023 -14.84828 -14.62820 -14.56672 -14.34165 -14.14729 -14.07523 -13.64929 -13.51042 -13.23776 -13.18033 -12.75782 -12.40599 -12.32832 -11.82240 -11.67039 -11.45657 -11.35047 -11.19128 -10.87231 -10.65261 -10.43174 -10.35380 -9.67167 -9.25550 -9.03460 -8.75795 -8.37018 -8.21034 -8.13003 -6.55815 -3.97116 0.79930 0.91153 1.39938 1.56589 2.92116 3.07263 3.20967 3.24743 3.28657 3.60532 3.70285 3.90482 4.11461 4.18330 4.41885 4.64848 4.76782 4.80660 4.88063 4.92501 5.12196 5.13226 5.25606 5.31996 5.35962 5.58538 5.61833 5.67950 5.75307 5.86046 5.94294 6.01473 6.06916 6.17601 6.45608 6.56663 6.63628 6.67080 7.11114 7.25962 7.42714 7.87727 8.41434 9.01164 9.32641 9.81815 10.61124 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.013347 B = 0.003575 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.283538 B = 7830.634309 C = 8619.000234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.027 3.973 3 Si 0.932 3.068 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.302 4.302 8 H 0.107 0.893 9 N -0.544 5.544 10 C 0.446 3.554 11 O -0.570 6.570 12 C 0.116 3.884 13 H 0.093 0.907 14 O -0.262 6.262 15 C 0.163 3.837 16 C -0.133 4.133 17 C -0.085 4.085 18 C 0.018 3.982 19 F -0.134 7.134 20 C 0.111 3.889 21 F -0.127 7.127 22 C -0.221 4.221 23 C -0.110 4.110 24 C -0.086 4.086 25 C -0.122 4.122 26 C -0.116 4.116 27 C -0.117 4.117 28 C -0.104 4.104 29 H 0.274 0.726 30 H 0.394 0.606 31 H 0.151 0.849 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.128 0.872 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.108 -15.081 1.746 15.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.176 4.176 3 Si 0.759 3.241 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.431 4.431 8 H 0.125 0.875 9 N -0.180 5.180 10 C 0.230 3.770 11 O -0.454 6.454 12 C 0.056 3.944 13 H 0.111 0.889 14 O -0.173 6.173 15 C 0.115 3.885 16 C -0.152 4.152 17 C -0.104 4.104 18 C -0.003 4.003 19 F -0.113 7.113 20 C 0.091 3.909 21 F -0.105 7.105 22 C -0.241 4.241 23 C -0.111 4.111 24 C -0.104 4.104 25 C -0.140 4.140 26 C -0.134 4.134 27 C -0.135 4.135 28 C -0.122 4.122 29 H 0.084 0.916 30 H 0.228 0.772 31 H 0.169 0.831 32 H 0.169 0.831 33 H 0.170 0.830 34 H 0.146 0.854 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.290 -14.889 1.782 15.169 hybrid contribution -0.942 0.752 -0.133 1.213 sum -3.232 -14.137 1.649 14.595 Atomic orbital electron populations 1.69619 1.06004 1.28446 1.49320 1.25307 0.95682 0.99860 0.96723 0.85757 0.79786 0.80731 0.77865 1.19026 1.20550 1.20575 1.19789 0.93532 0.81657 1.48114 0.87495 1.41667 1.09325 1.03971 1.63026 1.18950 0.88029 0.83490 0.86546 1.90573 1.13074 1.86249 1.55480 1.21199 0.90522 0.87001 0.95647 0.88927 1.86313 1.37317 1.17851 1.75832 1.18919 0.90833 0.87327 0.91395 1.20389 1.00838 0.90805 1.03158 1.20830 0.92694 0.98538 0.98297 1.17494 0.92796 0.83097 1.06876 1.91497 1.88947 1.46028 1.84830 1.17325 0.78095 0.94159 1.01317 1.91530 1.31546 1.96202 1.91253 1.21236 0.96433 0.98698 1.07721 1.20021 0.93937 1.01838 0.95305 1.20988 1.00275 0.97350 0.91766 1.21111 0.94459 1.00718 0.97728 1.21154 0.94830 0.99305 0.98145 1.21049 0.99960 0.99854 0.92642 1.20998 0.93054 0.99250 0.98938 0.91629 0.77244 0.83147 0.83079 0.83028 0.85444 0.86046 0.86211 0.85851 0.85721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.30 13.05 55.50 0.72 -22.58 16 2 C 0.03 0.70 5.50 -17.47 -0.10 0.60 16 3 Si 0.93 20.30 29.55 -169.99 -5.02 15.28 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.30 -8.13 9.68 -14.94 -0.14 -8.27 16 8 H 0.11 3.02 7.16 -52.48 -0.38 2.65 16 9 N -0.54 -13.33 5.24 -10.96 -0.06 -13.39 16 10 C 0.45 10.38 7.11 -10.99 -0.08 10.30 16 11 O -0.57 -15.38 16.08 -14.31 -0.23 -15.61 16 12 C 0.12 2.08 2.25 -29.04 -0.07 2.02 16 13 H 0.09 1.47 6.19 -51.93 -0.32 1.14 16 14 O -0.26 -4.54 8.66 -39.43 -0.34 -4.88 16 15 C 0.16 2.32 6.59 -39.24 -0.26 2.06 16 16 C -0.13 -1.55 9.98 -39.43 -0.39 -1.95 16 17 C -0.08 -0.87 10.02 -39.55 -0.40 -1.27 16 18 C 0.02 0.22 7.30 -39.36 -0.29 -0.07 16 19 F -0.13 -1.72 17.18 2.25 0.04 -1.68 16 20 C 0.11 1.48 7.30 -39.38 -0.29 1.19 16 21 F -0.13 -1.76 17.18 2.25 0.04 -1.72 16 22 C -0.22 -3.00 8.68 -39.38 -0.34 -3.34 16 23 C -0.11 -1.80 4.10 -104.62 -0.43 -2.23 16 24 C -0.09 -1.37 9.35 -39.58 -0.37 -1.74 16 25 C -0.12 -1.67 10.05 -39.58 -0.40 -2.07 16 26 C -0.12 -1.48 10.05 -39.59 -0.40 -1.88 16 27 C -0.12 -1.55 10.05 -39.59 -0.40 -1.95 16 28 C -0.10 -1.53 9.17 -39.58 -0.36 -1.90 16 29 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 30 H 0.39 9.19 7.90 -40.82 -0.32 8.87 16 31 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.15 1.98 5.26 -52.49 -0.28 1.70 16 34 H 0.13 2.08 7.77 -52.49 -0.41 1.67 16 35 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 36 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.12 1.35 8.06 -52.48 -0.42 0.92 16 38 H 0.12 1.64 8.04 -52.49 -0.42 1.22 16 LS Contribution 346.36 15.07 5.22 5.22 Total: -1.00 -30.70 346.36 -7.71 -38.41 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -3.37 Total: 11.44 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -4.70 Total: -10.48 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.67 Total: -35.97 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.57 Total: -20.49 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.08 Total: -3.40 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.70 -7.71 -38.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071884650.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.241 kcal (2) G-P(sol) polarization free energy of solvation -30.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds