Wall clock time and date at job start Fri Apr 10 2020 14:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86797 * 120.00031 * 2 1 4 4 H 1.48498 * 109.47076 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47258 * 299.99636 * 3 2 1 6 6 H 1.48496 * 109.47310 * 59.99519 * 3 2 1 7 7 C 1.38948 * 119.99637 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99448 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00505 * 0.02562 * 7 2 1 10 10 C 1.34773 * 120.00159 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00304 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99681 * 180.02562 * 10 9 7 13 13 H 1.08997 * 109.47375 * 55.00586 * 12 10 9 14 14 O 1.42909 * 109.46868 * 175.00684 * 12 10 9 15 15 C 1.35947 * 116.99851 * 204.60635 * 14 12 10 16 16 C 1.38725 * 120.01854 * 174.36410 * 15 14 12 17 17 C 1.38162 * 120.01250 * 179.71628 * 16 15 14 18 18 C 1.38412 * 120.05441 * 0.55700 * 17 16 15 19 19 F 1.35096 * 119.98530 * 179.74423 * 18 17 16 20 20 C 1.38657 * 120.03908 * 359.72013 * 18 17 16 21 21 F 1.35099 * 120.00707 * 179.97438 * 20 18 17 22 22 C 1.38361 * 119.98501 * 359.97438 * 20 18 17 23 23 C 1.50699 * 109.47615 * 295.00117 * 12 10 9 24 24 C 1.38242 * 120.00173 * 279.73333 * 23 12 10 25 25 C 1.38235 * 119.99757 * 179.78184 * 24 23 12 26 26 C 1.38233 * 119.99876 * 0.44240 * 25 24 23 27 27 C 1.38228 * 120.00190 * 359.81175 * 26 25 24 28 28 C 1.38230 * 120.00493 * 359.97438 * 27 26 25 29 29 H 0.97000 * 119.99694 * 0.02562 * 1 2 3 30 30 H 0.97004 * 119.99501 * 0.02562 * 9 7 2 31 31 H 1.07994 * 119.99231 * 359.97438 * 16 15 14 32 32 H 1.08000 * 119.97471 * 180.25272 * 17 16 15 33 33 H 1.07999 * 120.02312 * 180.02562 * 22 20 18 34 34 H 1.07998 * 119.99899 * 359.97438 * 24 23 12 35 35 H 1.07998 * 119.99554 * 180.27145 * 25 24 23 36 36 H 1.08002 * 119.99693 * 179.82782 * 26 25 24 37 37 H 1.08011 * 120.00139 * 180.02562 * 27 26 25 38 38 H 1.08001 * 120.00680 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8894 2.3965 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5579 0.0010 12 6 1.2437 -4.8629 0.0000 13 1 0.5520 -4.8827 -0.8421 14 8 2.1680 -5.9465 -0.1172 15 6 1.6934 -7.1088 -0.6388 16 6 2.5606 -8.1621 -0.8896 17 6 2.0772 -9.3453 -1.4143 18 6 0.7295 -9.4771 -1.7009 19 9 0.2593 -10.6329 -2.2186 20 6 -0.1383 -8.4237 -1.4564 21 9 -1.4536 -8.5529 -1.7368 22 6 0.3430 -7.2403 -0.9251 23 6 0.4719 -4.9980 1.2873 24 6 1.1145 -5.4154 2.4379 25 6 0.4075 -5.5350 3.6197 26 6 -0.9440 -5.2461 3.6488 27 6 -1.5876 -4.8338 2.4971 28 6 -0.8798 -4.7099 1.3163 29 1 -0.4850 0.8401 -0.0004 30 1 0.3534 -2.3906 -0.0002 31 1 3.6131 -8.0586 -0.6709 32 1 2.7523 -10.1664 -1.6055 33 1 -0.3325 -6.4196 -0.7341 34 1 2.1696 -5.6450 2.4142 35 1 0.9105 -5.8568 4.5196 36 1 -1.4969 -5.3422 4.5716 37 1 -2.6435 -4.6076 2.5200 38 1 -1.3826 -4.3874 0.4165 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071884650.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:50:37 Heat of formation + Delta-G solvation = -121.759974 kcal Electronic energy + Delta-G solvation = -27940.702124 eV Core-core repulsion = 23577.066598 eV Total energy + Delta-G solvation = -4363.635525 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.096 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.54736 -49.61036 -41.93762 -40.19496 -39.56028 -38.10817 -36.06206 -33.81577 -32.88914 -32.00563 -31.80311 -30.59030 -28.66402 -26.63748 -24.41462 -23.87739 -23.43600 -22.87835 -21.28070 -20.15355 -19.76564 -18.67980 -18.51921 -18.24642 -17.63068 -17.37797 -17.30654 -16.75056 -16.69608 -16.04009 -15.87364 -15.71938 -15.59914 -15.43137 -15.22536 -15.11138 -15.10255 -14.32841 -14.26937 -14.03381 -13.66494 -13.57412 -13.48332 -13.05708 -12.93652 -12.50754 -12.45890 -12.38278 -12.12633 -11.97628 -11.83193 -11.59346 -10.65918 -10.22989 -10.11934 -9.86140 -9.70079 -9.32982 -8.53400 -6.03250 -0.18410 -0.09070 0.27443 0.46135 1.33046 1.41019 1.53265 1.68624 1.84394 2.26251 2.30590 2.70706 2.74139 3.10271 3.15736 3.25366 3.41621 3.50252 3.72117 3.79341 3.86421 4.07643 4.12815 4.15215 4.25975 4.41159 4.57255 4.58007 4.66002 4.76400 4.93681 4.96033 5.00021 5.10415 5.36121 5.43511 5.49813 5.56305 5.56680 5.85739 6.04407 6.11359 6.47272 7.01877 7.38380 7.91794 8.63473 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.013347 B = 0.003575 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.283538 B = 7830.634309 C = 8619.000234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.004 4.004 3 Si 0.994 3.006 4 H -0.272 1.272 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.338 4.338 8 H 0.083 0.917 9 N -0.549 5.549 10 C 0.443 3.557 11 O -0.615 6.615 12 C 0.132 3.868 13 H 0.109 0.891 14 O -0.284 6.284 15 C 0.140 3.860 16 C -0.127 4.127 17 C -0.065 4.065 18 C 0.017 3.983 19 F -0.136 7.136 20 C 0.098 3.902 21 F -0.133 7.133 22 C -0.222 4.222 23 C -0.126 4.126 24 C -0.108 4.108 25 C -0.125 4.125 26 C -0.112 4.112 27 C -0.120 4.120 28 C -0.116 4.116 29 H 0.281 0.719 30 H 0.398 0.602 31 H 0.167 0.833 32 H 0.190 0.810 33 H 0.151 0.849 34 H 0.112 0.888 35 H 0.145 0.855 36 H 0.154 0.846 37 H 0.151 0.849 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.012 -15.891 2.419 16.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.205 4.205 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.101 0.899 9 N -0.185 5.185 10 C 0.229 3.771 11 O -0.502 6.502 12 C 0.072 3.928 13 H 0.126 0.874 14 O -0.196 6.196 15 C 0.093 3.907 16 C -0.146 4.146 17 C -0.083 4.083 18 C -0.003 4.003 19 F -0.114 7.114 20 C 0.078 3.922 21 F -0.112 7.112 22 C -0.242 4.242 23 C -0.127 4.127 24 C -0.126 4.126 25 C -0.143 4.143 26 C -0.130 4.130 27 C -0.137 4.137 28 C -0.134 4.134 29 H 0.091 0.909 30 H 0.233 0.767 31 H 0.185 0.815 32 H 0.207 0.793 33 H 0.169 0.831 34 H 0.130 0.870 35 H 0.163 0.837 36 H 0.172 0.828 37 H 0.168 0.832 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.233 -15.719 2.450 16.234 hybrid contribution -0.675 0.883 -0.332 1.160 sum -3.907 -14.836 2.118 15.488 Atomic orbital electron populations 1.69669 1.06819 1.29627 1.48890 1.26059 0.96562 1.02343 0.95586 0.84859 0.78124 0.76817 0.78501 1.19679 1.19329 1.19458 1.19741 0.92880 0.83383 1.50683 0.89932 1.41669 1.09414 1.04027 1.63393 1.19847 0.87826 0.85028 0.84363 1.90524 1.15267 1.87403 1.56958 1.20820 0.89788 0.84674 0.97521 0.87382 1.86252 1.37772 1.18671 1.76919 1.19191 0.91700 0.86984 0.92791 1.20676 1.01376 0.90338 1.02195 1.21169 0.92241 0.98782 0.96158 1.17695 0.93414 0.82667 1.06512 1.91498 1.89087 1.46013 1.84830 1.17434 0.78082 0.94565 1.02106 1.91509 1.32014 1.96242 1.91402 1.21185 0.96239 0.98914 1.07837 1.19931 0.94639 1.03595 0.94511 1.21054 0.99964 0.98724 0.92893 1.21424 0.95129 1.00083 0.97620 1.21585 0.94511 0.97577 0.99310 1.21446 1.01287 0.98880 0.92126 1.21221 0.92558 0.99333 1.00272 0.90944 0.76729 0.81549 0.79252 0.83141 0.86958 0.83680 0.82833 0.83164 0.84772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.33 13.05 21.66 0.28 -47.05 16 2 C 0.00 -0.22 5.50 84.92 0.47 0.25 16 3 Si 0.99 41.63 29.55 68.60 2.03 43.66 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 6 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 7 C -0.34 -18.85 9.68 84.04 0.81 -18.03 16 8 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 9 N -0.55 -27.94 5.24 -306.99 -1.61 -29.55 16 10 C 0.44 21.61 7.11 87.66 0.62 22.23 16 11 O -0.61 -34.97 16.08 15.92 0.26 -34.71 16 12 C 0.13 4.89 2.25 29.10 0.07 4.96 16 13 H 0.11 3.55 6.19 -2.39 -0.01 3.53 16 14 O -0.28 -10.18 8.66 -73.97 -0.64 -10.82 16 15 C 0.14 3.97 6.59 22.49 0.15 4.12 16 16 C -0.13 -2.79 9.98 22.37 0.22 -2.56 16 17 C -0.07 -1.17 10.02 22.29 0.22 -0.95 16 18 C 0.02 0.40 7.30 22.41 0.16 0.56 16 19 F -0.14 -3.20 17.18 44.97 0.77 -2.43 16 20 C 0.10 2.55 7.30 22.40 0.16 2.71 16 21 F -0.13 -3.63 17.18 44.97 0.77 -2.86 16 22 C -0.22 -6.00 8.68 22.40 0.19 -5.81 16 23 C -0.13 -4.19 4.10 -19.86 -0.08 -4.27 16 24 C -0.11 -3.50 9.35 22.27 0.21 -3.29 16 25 C -0.12 -3.24 10.05 22.27 0.22 -3.02 16 26 C -0.11 -2.57 10.05 22.27 0.22 -2.35 16 27 C -0.12 -2.93 10.05 22.27 0.22 -2.70 16 28 C -0.12 -3.34 9.17 22.27 0.20 -3.14 16 29 H 0.28 13.57 8.31 -92.71 -0.77 12.80 16 30 H 0.40 19.15 7.90 -92.71 -0.73 18.42 16 31 H 0.17 3.09 8.06 -2.91 -0.02 3.06 16 32 H 0.19 1.95 8.06 -2.91 -0.02 1.93 16 33 H 0.15 3.99 5.26 -2.91 -0.02 3.98 16 34 H 0.11 3.86 7.77 -2.91 -0.02 3.84 16 35 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 36 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 37 H 0.15 2.81 8.06 -2.90 -0.02 2.78 16 38 H 0.13 3.48 8.04 -2.91 -0.02 3.45 16 Total: -1.00 -68.29 346.36 6.35 -61.94 By element: Atomic # 1 Polarization: 32.70 SS G_CDS: 0.40 Total: 33.11 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: 4.09 Total: -11.29 kcal Atomic # 7 Polarization: -75.27 SS G_CDS: -1.33 Total: -76.60 kcal Atomic # 8 Polarization: -45.15 SS G_CDS: -0.38 Total: -45.53 kcal Atomic # 9 Polarization: -6.83 SS G_CDS: 1.55 Total: -5.29 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -68.29 6.35 -61.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071884650.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.821 kcal (2) G-P(sol) polarization free energy of solvation -68.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds