Wall clock time and date at job start Fri Apr 10 2020 14:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30686 * 1 3 3 Si 1.86801 * 119.99682 * 2 1 4 4 H 1.48496 * 109.47112 * 274.98343 * 3 2 1 5 5 H 1.48503 * 109.47117 * 34.98275 * 3 2 1 6 6 H 1.48502 * 109.46970 * 154.98151 * 3 2 1 7 7 C 1.40231 * 120.00301 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00133 * 186.05423 * 7 2 1 9 9 C 1.39994 * 120.00119 * 6.05518 * 7 2 1 10 10 N 1.32986 * 125.96383 * 354.39637 * 9 7 2 11 11 C 1.32754 * 109.22621 * 180.23402 * 10 9 7 12 12 C 1.36216 * 108.62251 * 359.76259 * 11 10 9 13 13 N 1.36418 * 107.18974 * 0.02562 * 12 11 10 14 14 C 1.46505 * 126.55434 * 179.97438 * 13 12 11 15 15 C 1.52994 * 109.47242 * 265.02031 * 14 13 12 16 16 H 1.09000 * 109.47444 * 305.00511 * 15 14 13 17 17 O 1.42906 * 109.46947 * 65.00122 * 15 14 13 18 18 C 1.52998 * 109.47088 * 184.99921 * 15 14 13 19 19 O 1.42905 * 109.46705 * 175.00127 * 18 15 14 20 20 C 1.35903 * 116.99578 * 179.97438 * 19 18 15 21 21 C 1.38752 * 120.05626 * 359.72981 * 20 19 18 22 22 C 1.38122 * 119.94326 * 179.78968 * 21 20 19 23 23 C 1.38295 * 120.05326 * 0.47852 * 22 21 20 24 24 C 1.38237 * 120.11572 * 359.75116 * 23 22 21 25 25 N 1.48002 * 119.97680 * 179.97438 * 24 23 22 26 26 O 1.21793 * 120.00201 * 180.02562 * 25 24 23 27 27 O 1.21802 * 119.99760 * 0.02562 * 25 24 23 28 28 C 1.38169 * 120.05342 * 0.02562 * 24 23 22 29 29 H 0.96996 * 120.00342 * 359.97438 * 1 2 3 30 30 H 1.07997 * 125.68831 * 179.74390 * 11 10 9 31 31 H 1.07997 * 126.40454 * 179.97438 * 12 11 10 32 32 H 1.09000 * 109.47321 * 145.02024 * 14 13 12 33 33 H 1.09004 * 109.46860 * 25.02345 * 14 13 12 34 34 H 0.96700 * 114.00014 * 59.99724 * 17 15 14 35 35 H 1.09003 * 109.47270 * 294.99618 * 18 15 14 36 36 H 1.08996 * 109.47438 * 55.00228 * 18 15 14 37 37 H 1.08002 * 120.03138 * 359.97438 * 21 20 19 38 38 H 1.08006 * 119.97470 * 180.23016 * 22 21 20 39 39 H 1.08004 * 119.94273 * 179.76662 * 23 22 21 40 40 H 1.07999 * 120.03171 * 180.02562 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.3829 2.1073 -1.3947 5 1 1.4948 2.6200 0.8027 6 1 3.5870 1.4122 0.5921 7 6 2.0081 -1.2144 -0.0005 8 1 3.0836 -1.2170 0.0981 9 6 1.3141 -2.4234 -0.1290 10 7 -0.0079 -2.5664 -0.1524 11 6 -0.3062 -3.8536 -0.2810 12 6 0.8539 -4.5643 -0.3481 13 7 1.8803 -3.6704 -0.2557 14 6 3.3120 -3.9800 -0.2814 15 6 3.8319 -4.1081 1.1518 16 1 3.5933 -3.2012 1.7073 17 8 3.2137 -5.2306 1.7843 18 6 5.3487 -4.3075 1.1282 19 8 5.8495 -4.3106 2.4666 20 6 7.1889 -4.4790 2.6237 21 6 8.0036 -4.6435 1.5127 22 6 9.3652 -4.8101 1.6748 23 6 9.9151 -4.8228 2.9436 24 6 9.1050 -4.6638 4.0523 25 7 9.6967 -4.6785 5.4088 26 8 8.9833 -4.5389 6.3860 27 8 10.8972 -4.8302 5.5479 28 6 7.7430 -4.4923 3.8953 29 1 -0.4850 0.8400 0.0004 30 1 -1.3024 -4.2681 -0.3249 31 1 0.9443 -5.6353 -0.4538 32 1 3.8477 -3.1798 -0.7921 33 1 3.4711 -4.9194 -0.8110 34 1 3.3838 -6.0738 1.3426 35 1 5.5827 -5.2590 0.6505 36 1 5.8132 -3.4959 0.5683 37 1 7.5740 -4.6384 0.5218 38 1 10.0003 -4.9345 0.8101 39 1 10.9795 -4.9570 3.0685 40 1 7.1105 -4.3677 4.7617 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095438677.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:52:52 Heat of formation + Delta-G solvation = 2.335943 kcal Electronic energy + Delta-G solvation = -27349.453515 eV Core-core repulsion = 23134.579459 eV Total energy + Delta-G solvation = -4214.874056 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.120 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.46564 -40.78908 -40.00508 -38.40547 -36.91894 -36.80187 -33.39576 -32.80436 -32.38314 -31.27114 -29.61070 -28.67739 -27.06221 -25.82649 -24.80249 -23.48170 -22.68881 -21.75538 -20.02727 -19.95010 -19.37315 -18.94655 -17.80901 -17.59561 -17.40882 -16.80980 -16.65330 -16.47306 -15.84399 -15.48095 -14.98652 -14.67335 -14.64455 -14.38188 -13.74479 -13.38165 -12.97852 -12.82560 -12.63789 -12.58548 -12.16995 -12.05314 -11.80993 -11.64615 -11.56321 -11.45662 -11.39294 -11.25832 -11.19030 -10.96203 -10.50186 -10.25860 -10.18830 -10.10707 -9.25771 -9.01432 -8.02713 -7.81168 -7.09107 -6.45647 -4.33989 -0.53687 0.55134 1.00857 1.02236 2.52939 2.83711 2.99511 3.10395 3.13016 3.59564 3.90947 3.94759 4.10066 4.16875 4.25546 4.29679 4.33775 4.49427 4.60451 4.67965 4.75158 4.91667 5.01776 5.09616 5.11758 5.27493 5.43256 5.49366 5.58053 5.61618 5.74613 6.01872 6.08712 6.25082 6.53408 6.74699 7.07938 7.22683 7.35428 7.53778 7.65402 7.99760 8.13997 8.52507 8.90523 9.25083 10.20791 10.47986 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.013872 B = 0.002595 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.984376 B =10787.935232 C =11808.358385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.739 5.739 2 C 0.083 3.917 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.466 4.466 8 H 0.075 0.925 9 C 0.376 3.624 10 N -0.517 5.517 11 C -0.015 4.015 12 C -0.168 4.168 13 N -0.500 5.500 14 C 0.106 3.894 15 C 0.093 3.907 16 H 0.122 0.878 17 O -0.537 6.537 18 C 0.027 3.973 19 O -0.289 6.289 20 C 0.143 3.857 21 C -0.163 4.163 22 C -0.075 4.075 23 C -0.100 4.100 24 C -0.005 4.005 25 N 0.027 4.973 26 O -0.152 6.152 27 O -0.157 6.157 28 C -0.094 4.094 29 H 0.273 0.727 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.365 0.635 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.154 0.846 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.798 -9.373 -0.178 21.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.505 4.505 8 H 0.093 0.907 9 C 0.133 3.867 10 N -0.238 5.238 11 C -0.167 4.167 12 C -0.297 4.297 13 N -0.191 5.191 14 C -0.020 4.020 15 C 0.032 3.968 16 H 0.140 0.860 17 O -0.340 6.340 18 C -0.049 4.049 19 O -0.201 6.201 20 C 0.095 3.905 21 C -0.181 4.181 22 C -0.093 4.093 23 C -0.120 4.120 24 C -0.087 4.087 25 N 0.548 4.452 26 O -0.370 6.370 27 O -0.373 6.373 28 C -0.113 4.113 29 H 0.084 0.916 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.211 0.789 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.166 0.834 38 H 0.168 0.832 39 H 0.172 0.828 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 17.415 -8.201 -0.240 19.251 hybrid contribution 1.454 -0.492 -0.364 1.578 sum 18.869 -8.693 -0.604 20.784 Atomic orbital electron populations 1.70008 1.06915 1.27670 1.31769 1.25672 0.94725 1.00130 0.93569 0.86341 0.80211 0.81476 0.78802 1.19713 1.20160 1.18937 1.18038 0.93608 0.87911 1.50933 0.90732 1.20304 0.87514 0.83510 0.95334 1.71290 1.10227 1.14531 1.27783 1.22119 0.95953 0.92268 1.06361 1.21717 0.88612 0.93988 1.25374 1.45200 1.02945 1.08129 1.62853 1.21704 0.83639 1.01908 0.94751 1.22557 0.86283 0.92115 0.95843 0.86000 1.86783 1.75463 1.16638 1.55129 1.23837 0.97295 1.02251 0.81542 1.86269 1.17402 1.86079 1.30333 1.18686 0.84338 0.94935 0.92496 1.21808 0.94719 1.02371 0.99246 1.20990 0.94478 0.97258 0.96604 1.20957 1.01415 0.99160 0.90419 1.20713 0.93520 1.12148 0.82360 1.43555 1.00916 0.97697 1.03033 1.94579 1.60138 1.52397 1.29859 1.94534 0.97654 1.52526 1.92623 1.20129 0.92545 1.00621 0.98039 0.91650 0.84961 0.84948 0.89274 0.90813 0.78927 0.91217 0.90172 0.83411 0.83173 0.82849 0.81988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.38 11.92 55.56 0.66 -19.72 16 2 C 0.08 2.13 5.49 -17.29 -0.09 2.03 16 3 Si 0.91 18.58 29.57 -169.99 -5.03 13.55 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.47 -12.03 8.99 -38.18 -0.34 -12.37 16 8 H 0.07 1.73 7.39 -52.48 -0.39 1.34 16 9 C 0.38 10.01 7.43 -155.60 -1.16 8.86 16 10 N -0.52 -14.82 9.43 -12.73 -0.12 -14.94 16 11 C -0.02 -0.37 11.85 -17.88 -0.21 -0.59 16 12 C -0.17 -3.68 11.60 -16.24 -0.19 -3.87 16 13 N -0.50 -10.92 2.76 -115.97 -0.32 -11.24 16 14 C 0.11 1.62 5.47 -4.04 -0.02 1.60 16 15 C 0.09 1.32 3.49 -26.73 -0.09 1.22 16 16 H 0.12 2.18 8.14 -51.93 -0.42 1.76 16 17 O -0.54 -8.15 13.25 -40.09 -0.53 -8.68 16 18 C 0.03 0.26 4.37 37.16 0.16 0.42 16 19 O -0.29 -3.40 10.10 -24.29 -0.25 -3.65 16 20 C 0.14 1.41 6.69 -39.21 -0.26 1.15 16 21 C -0.16 -1.14 9.04 -39.43 -0.36 -1.49 16 22 C -0.07 -0.43 10.04 -39.60 -0.40 -0.83 16 23 C -0.10 -0.76 9.55 -39.56 -0.38 -1.14 16 24 C 0.00 -0.05 6.85 -79.98 -0.55 -0.60 16 25 N 0.03 0.34 4.45 33.95 0.15 0.49 16 26 O -0.15 -2.06 18.45 -29.46 -0.54 -2.60 16 27 O -0.16 -1.96 18.44 -29.46 -0.54 -2.50 16 28 C -0.09 -0.99 9.49 -39.43 -0.37 -1.36 16 29 H 0.27 6.84 8.29 -40.82 -0.34 6.50 16 30 H 0.13 2.92 8.06 -52.49 -0.42 2.50 16 31 H 0.13 2.42 8.06 -52.49 -0.42 2.00 16 32 H 0.09 1.28 7.69 -51.93 -0.40 0.88 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.36 3.84 9.05 45.56 0.41 4.25 16 35 H 0.07 0.47 7.65 -51.93 -0.40 0.08 16 36 H 0.08 0.65 7.68 -51.93 -0.40 0.25 16 37 H 0.15 0.70 6.30 -52.49 -0.33 0.37 16 38 H 0.15 0.40 8.06 -52.48 -0.42 -0.02 16 39 H 0.15 0.92 7.61 -52.48 -0.40 0.52 16 40 H 0.16 1.74 7.61 -52.49 -0.40 1.34 16 LS Contribution 359.74 15.07 5.42 5.42 Total: -1.00 -34.84 359.74 -8.90 -43.75 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -3.55 Total: 7.09 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -4.26 Total: -6.96 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.37 Total: -45.42 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -1.86 Total: -17.43 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.84 -8.90 -43.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095438677.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.084 kcal (2) G-P(sol) polarization free energy of solvation -34.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds