Wall clock time and date at job start Fri Apr 10 2020 14:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30690 * 1 3 3 Si 1.86799 * 120.00141 * 2 1 4 4 H 1.48504 * 109.47184 * 274.98528 * 3 2 1 5 5 H 1.48493 * 109.46995 * 34.98528 * 3 2 1 6 6 H 1.48501 * 109.47253 * 154.99020 * 3 2 1 7 7 C 1.40237 * 119.99925 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00000 * 174.32650 * 7 2 1 9 9 C 1.40003 * 119.99806 * 354.61070 * 7 2 1 10 10 N 1.32973 * 125.96418 * 6.23507 * 9 7 2 11 11 C 1.32758 * 109.22500 * 179.97438 * 10 9 7 12 12 C 1.36216 * 108.62150 * 359.97438 * 11 10 9 13 13 N 1.36419 * 107.19034 * 359.76433 * 12 11 10 14 14 C 1.46498 * 126.55667 * 180.23935 * 13 12 11 15 15 C 1.53003 * 109.47187 * 265.16584 * 14 13 12 16 16 H 1.08998 * 109.46651 * 54.99722 * 15 14 13 17 17 O 1.42897 * 109.47029 * 294.99919 * 15 14 13 18 18 C 1.52998 * 109.47324 * 174.99751 * 15 14 13 19 19 O 1.42898 * 109.47356 * 184.99978 * 18 15 14 20 20 C 1.35899 * 117.00244 * 180.02562 * 19 18 15 21 21 C 1.38755 * 120.05267 * 359.72518 * 20 19 18 22 22 C 1.38129 * 119.93862 * 179.79286 * 21 20 19 23 23 C 1.38287 * 120.05492 * 0.48023 * 22 21 20 24 24 C 1.38238 * 120.11225 * 359.75230 * 23 22 21 25 25 N 1.48006 * 119.96643 * 179.97438 * 24 23 22 26 26 O 1.21804 * 119.99551 * 180.02562 * 25 24 23 27 27 O 1.21797 * 120.00513 * 0.02562 * 25 24 23 28 28 C 1.38158 * 120.05995 * 0.02562 * 24 23 22 29 29 H 0.97002 * 119.99894 * 0.02562 * 1 2 3 30 30 H 1.08007 * 125.68919 * 180.02562 * 11 10 9 31 31 H 1.07995 * 126.40844 * 180.02562 * 12 11 10 32 32 H 1.09003 * 109.47502 * 25.16427 * 14 13 12 33 33 H 1.09002 * 109.47424 * 145.16354 * 14 13 12 34 34 H 0.96699 * 114.00107 * 299.99866 * 17 15 14 35 35 H 1.09003 * 109.47118 * 305.00062 * 18 15 14 36 36 H 1.09006 * 109.46734 * 64.99955 * 18 15 14 37 37 H 1.07994 * 120.02892 * 0.02562 * 21 20 19 38 38 H 1.08001 * 119.96701 * 180.23368 * 22 21 20 39 39 H 1.08006 * 119.93923 * 179.76851 * 23 22 21 40 40 H 1.08000 * 120.03467 * 180.02562 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.3831 2.1072 -1.3948 5 1 1.4951 2.6199 0.8027 6 1 3.5873 1.4120 0.5919 7 6 2.0081 -1.2145 0.0005 8 1 3.0841 -1.2168 -0.0919 9 6 1.3126 -2.4242 0.1150 10 7 -0.0093 -2.5683 0.1124 11 6 -0.3089 -3.8554 0.2393 12 6 0.8503 -4.5654 0.3260 13 7 1.8776 -3.6717 0.2428 14 6 3.3089 -3.9811 0.2852 15 6 3.8222 -3.8250 1.7181 16 1 3.2239 -4.4428 2.3877 17 8 3.7196 -2.4559 2.1143 18 6 5.2852 -4.2675 1.7869 19 8 5.7302 -4.2324 3.1444 20 6 7.0172 -4.5987 3.3815 21 6 7.8335 -4.9895 2.3297 22 6 9.1425 -5.3572 2.5728 23 6 9.6367 -5.3456 3.8643 24 6 8.8241 -4.9612 4.9144 25 7 9.3562 -4.9505 6.2955 26 8 8.6404 -4.6123 7.2212 27 8 10.5097 -5.2798 6.5064 28 6 7.5154 -4.5881 4.6761 29 1 -0.4850 0.8401 -0.0004 30 1 -1.3057 -4.2704 0.2682 31 1 0.9396 -5.6361 0.4355 32 1 3.4691 -5.0064 -0.0483 33 1 3.8482 -3.2974 -0.3704 34 1 4.2280 -1.8472 1.5611 35 1 5.3762 -5.2828 1.4009 36 1 5.8970 -3.5942 1.1864 37 1 7.4467 -5.0026 1.3214 38 1 9.7794 -5.6579 1.7540 39 1 10.6595 -5.6371 4.0527 40 1 6.8809 -4.2875 5.4967 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095438678.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:52:54 Heat of formation + Delta-G solvation = 4.546958 kcal Electronic energy + Delta-G solvation = -27439.443198 eV Core-core repulsion = 23224.665019 eV Total energy + Delta-G solvation = -4214.778179 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.120 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.47448 -40.78908 -39.98568 -38.37391 -36.85928 -36.71915 -33.39943 -32.63380 -32.38887 -31.27109 -29.59183 -28.64540 -27.06969 -25.81454 -24.77501 -23.48726 -22.68249 -21.69506 -20.03838 -19.92426 -19.31041 -18.95502 -17.81830 -17.58996 -17.33891 -16.79948 -16.66867 -16.47961 -15.88450 -15.35169 -14.76280 -14.70124 -14.65006 -14.33664 -13.72253 -13.37155 -13.00389 -12.81315 -12.61796 -12.51672 -12.11242 -12.03604 -11.81926 -11.68030 -11.49464 -11.46279 -11.40307 -11.23826 -11.13631 -10.91877 -10.44940 -10.17998 -10.11721 -10.03536 -9.18779 -9.02114 -8.00894 -7.79266 -7.06811 -6.41912 -4.28836 -0.54716 0.54198 0.99863 1.01205 2.53210 2.82768 3.01842 3.12479 3.15456 3.60458 3.92230 3.95688 4.11397 4.16458 4.27283 4.31265 4.39985 4.49391 4.63856 4.71690 4.79114 4.91955 5.00414 5.11632 5.23310 5.26906 5.42464 5.48597 5.57299 5.60532 5.73574 6.01879 6.07676 6.24475 6.53217 6.74584 7.08283 7.24672 7.34341 7.56882 7.95101 8.01961 8.16404 8.53988 8.94222 9.29212 10.23282 10.51823 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.015866 B = 0.002499 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.406776 B =11199.652523 C =11999.985349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.741 5.741 2 C 0.083 3.917 3 Si 0.908 3.092 4 H -0.274 1.274 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.449 4.449 8 H 0.072 0.928 9 C 0.389 3.611 10 N -0.522 5.522 11 C -0.008 4.008 12 C -0.188 4.188 13 N -0.504 5.504 14 C 0.106 3.894 15 C 0.097 3.903 16 H 0.108 0.892 17 O -0.526 6.526 18 C 0.025 3.975 19 O -0.288 6.288 20 C 0.143 3.857 21 C -0.163 4.163 22 C -0.075 4.075 23 C -0.100 4.100 24 C -0.005 4.005 25 N 0.027 4.973 26 O -0.153 6.153 27 O -0.157 6.157 28 C -0.094 4.094 29 H 0.272 0.728 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.373 0.627 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.148 0.852 38 H 0.150 0.850 39 H 0.154 0.846 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.669 -9.604 1.867 21.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.366 5.366 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.488 4.488 8 H 0.090 0.910 9 C 0.147 3.853 10 N -0.243 5.243 11 C -0.161 4.161 12 C -0.317 4.317 13 N -0.195 5.195 14 C -0.021 4.021 15 C 0.035 3.965 16 H 0.126 0.874 17 O -0.330 6.330 18 C -0.051 4.051 19 O -0.201 6.201 20 C 0.095 3.905 21 C -0.182 4.182 22 C -0.093 4.093 23 C -0.120 4.120 24 C -0.087 4.087 25 N 0.548 4.452 26 O -0.370 6.370 27 O -0.373 6.373 28 C -0.114 4.114 29 H 0.083 0.917 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.221 0.779 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.166 0.834 38 H 0.168 0.832 39 H 0.171 0.829 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 17.149 -9.122 1.708 19.499 hybrid contribution 1.570 -0.017 -0.182 1.580 sum 18.718 -9.139 1.526 20.886 Atomic orbital electron populations 1.70009 1.06930 1.27568 1.32062 1.25678 0.94721 1.00129 0.93602 0.86340 0.80283 0.81588 0.78547 1.19964 1.20251 1.18850 1.17897 0.93161 0.87685 1.50095 0.90997 1.20245 0.87317 0.83450 0.94262 1.71309 1.10382 1.14356 1.28242 1.22133 0.95892 0.92344 1.05710 1.21758 0.88802 0.94129 1.26966 1.45170 1.02863 1.08267 1.63184 1.21712 0.83629 1.01484 0.95259 1.22429 0.90689 0.85965 0.97405 0.87432 1.86794 1.73895 1.14612 1.57706 1.23900 0.98356 1.02161 0.80709 1.86266 1.22813 1.81183 1.29802 1.18693 0.85231 0.94133 0.92403 1.21811 0.95020 1.01489 0.99842 1.20990 0.94951 0.97423 0.95968 1.20956 1.01061 0.98956 0.90997 1.20713 0.95182 1.10828 0.82013 1.43561 1.00633 0.97930 1.03086 1.94581 1.57058 1.49471 1.35884 1.94533 1.02232 1.50188 1.90367 1.20125 0.93503 1.00505 0.97231 0.91742 0.84981 0.84936 0.90517 0.89931 0.77909 0.90724 0.90925 0.83415 0.83182 0.82852 0.82000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.42 11.92 55.56 0.66 -19.76 16 2 C 0.08 2.10 5.49 -17.29 -0.09 2.00 16 3 Si 0.91 18.45 29.57 -169.99 -5.03 13.42 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.29 16 6 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 7 C -0.45 -11.33 7.99 -38.17 -0.30 -11.63 16 8 H 0.07 1.59 6.20 -52.49 -0.33 1.26 16 9 C 0.39 10.28 7.16 -155.60 -1.11 9.16 16 10 N -0.52 -14.94 9.43 -12.72 -0.12 -15.06 16 11 C -0.01 -0.20 11.85 -17.88 -0.21 -0.42 16 12 C -0.19 -4.13 11.60 -16.24 -0.19 -4.32 16 13 N -0.50 -11.00 2.78 -115.97 -0.32 -11.32 16 14 C 0.11 1.61 5.52 -4.04 -0.02 1.59 16 15 C 0.10 1.37 3.49 -26.73 -0.09 1.27 16 16 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 17 O -0.53 -9.19 11.95 -40.08 -0.48 -9.66 16 18 C 0.02 0.24 4.37 37.16 0.16 0.40 16 19 O -0.29 -3.34 10.10 -24.27 -0.25 -3.59 16 20 C 0.14 1.39 6.69 -39.21 -0.26 1.12 16 21 C -0.16 -1.12 9.04 -39.43 -0.36 -1.48 16 22 C -0.07 -0.43 10.04 -39.60 -0.40 -0.82 16 23 C -0.10 -0.75 9.55 -39.56 -0.38 -1.13 16 24 C 0.00 -0.05 6.85 -79.98 -0.55 -0.59 16 25 N 0.03 0.33 4.45 33.95 0.15 0.48 16 26 O -0.15 -2.04 18.45 -29.46 -0.54 -2.59 16 27 O -0.16 -1.94 18.44 -29.46 -0.54 -2.48 16 28 C -0.09 -0.97 9.49 -39.43 -0.37 -1.35 16 29 H 0.27 6.84 8.29 -40.82 -0.34 6.50 16 30 H 0.13 2.91 8.06 -52.48 -0.42 2.49 16 31 H 0.13 2.43 8.06 -52.49 -0.42 2.01 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 1.17 7.54 -51.93 -0.39 0.78 16 34 H 0.37 5.50 7.99 45.56 0.36 5.87 16 35 H 0.07 0.53 7.65 -51.93 -0.40 0.13 16 36 H 0.07 0.55 7.67 -51.93 -0.40 0.15 16 37 H 0.15 0.69 6.30 -52.49 -0.33 0.36 16 38 H 0.15 0.39 8.06 -52.49 -0.42 -0.04 16 39 H 0.15 0.90 7.61 -52.48 -0.40 0.50 16 40 H 0.16 1.71 7.61 -52.49 -0.40 1.32 16 LS Contribution 354.86 15.07 5.35 5.35 Total: -1.00 -34.52 354.86 -8.83 -43.34 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -3.53 Total: 8.06 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -4.18 Total: -6.20 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: 0.37 Total: -45.66 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -1.81 Total: -18.32 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.42 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.52 -8.83 -43.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095438678.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.890 kcal (2) G-P(sol) polarization free energy of solvation -34.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds