Wall clock time and date at job start Fri Apr 10 2020 14:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30690 * 1 3 3 Si 1.86799 * 120.00141 * 2 1 4 4 H 1.48504 * 109.47184 * 274.98528 * 3 2 1 5 5 H 1.48493 * 109.46995 * 34.98528 * 3 2 1 6 6 H 1.48501 * 109.47253 * 154.99020 * 3 2 1 7 7 C 1.40237 * 119.99925 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00000 * 174.32650 * 7 2 1 9 9 C 1.40003 * 119.99806 * 354.61070 * 7 2 1 10 10 N 1.32973 * 125.96418 * 6.23507 * 9 7 2 11 11 C 1.32758 * 109.22500 * 179.97438 * 10 9 7 12 12 C 1.36216 * 108.62150 * 359.97438 * 11 10 9 13 13 N 1.36419 * 107.19034 * 359.76433 * 12 11 10 14 14 C 1.46498 * 126.55667 * 180.23935 * 13 12 11 15 15 C 1.53003 * 109.47187 * 265.16584 * 14 13 12 16 16 H 1.08998 * 109.46651 * 54.99722 * 15 14 13 17 17 O 1.42897 * 109.47029 * 294.99919 * 15 14 13 18 18 C 1.52998 * 109.47324 * 174.99751 * 15 14 13 19 19 O 1.42898 * 109.47356 * 184.99978 * 18 15 14 20 20 C 1.35899 * 117.00244 * 180.02562 * 19 18 15 21 21 C 1.38755 * 120.05267 * 359.72518 * 20 19 18 22 22 C 1.38129 * 119.93862 * 179.79286 * 21 20 19 23 23 C 1.38287 * 120.05492 * 0.48023 * 22 21 20 24 24 C 1.38238 * 120.11225 * 359.75230 * 23 22 21 25 25 N 1.48006 * 119.96643 * 179.97438 * 24 23 22 26 26 O 1.21804 * 119.99551 * 180.02562 * 25 24 23 27 27 O 1.21797 * 120.00513 * 0.02562 * 25 24 23 28 28 C 1.38158 * 120.05995 * 0.02562 * 24 23 22 29 29 H 0.97002 * 119.99894 * 0.02562 * 1 2 3 30 30 H 1.08007 * 125.68919 * 180.02562 * 11 10 9 31 31 H 1.07995 * 126.40844 * 180.02562 * 12 11 10 32 32 H 1.09003 * 109.47502 * 25.16427 * 14 13 12 33 33 H 1.09002 * 109.47424 * 145.16354 * 14 13 12 34 34 H 0.96699 * 114.00107 * 299.99866 * 17 15 14 35 35 H 1.09003 * 109.47118 * 305.00062 * 18 15 14 36 36 H 1.09006 * 109.46734 * 64.99955 * 18 15 14 37 37 H 1.07994 * 120.02892 * 0.02562 * 21 20 19 38 38 H 1.08001 * 119.96701 * 180.23368 * 22 21 20 39 39 H 1.08006 * 119.93923 * 179.76851 * 23 22 21 40 40 H 1.08000 * 120.03467 * 180.02562 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.3831 2.1072 -1.3948 5 1 1.4951 2.6199 0.8027 6 1 3.5873 1.4120 0.5919 7 6 2.0081 -1.2145 0.0005 8 1 3.0841 -1.2168 -0.0919 9 6 1.3126 -2.4242 0.1150 10 7 -0.0093 -2.5683 0.1124 11 6 -0.3089 -3.8554 0.2393 12 6 0.8503 -4.5654 0.3260 13 7 1.8776 -3.6717 0.2428 14 6 3.3089 -3.9811 0.2852 15 6 3.8222 -3.8250 1.7181 16 1 3.2239 -4.4428 2.3877 17 8 3.7196 -2.4559 2.1143 18 6 5.2852 -4.2675 1.7869 19 8 5.7302 -4.2324 3.1444 20 6 7.0172 -4.5987 3.3815 21 6 7.8335 -4.9895 2.3297 22 6 9.1425 -5.3572 2.5728 23 6 9.6367 -5.3456 3.8643 24 6 8.8241 -4.9612 4.9144 25 7 9.3562 -4.9505 6.2955 26 8 8.6404 -4.6123 7.2212 27 8 10.5097 -5.2798 6.5064 28 6 7.5154 -4.5881 4.6761 29 1 -0.4850 0.8401 -0.0004 30 1 -1.3057 -4.2704 0.2682 31 1 0.9396 -5.6361 0.4355 32 1 3.4691 -5.0064 -0.0483 33 1 3.8482 -3.2974 -0.3704 34 1 4.2280 -1.8472 1.5611 35 1 5.3762 -5.2828 1.4009 36 1 5.8970 -3.5942 1.1864 37 1 7.4467 -5.0026 1.3214 38 1 9.7794 -5.6579 1.7540 39 1 10.6595 -5.6371 4.0527 40 1 6.8809 -4.2875 5.4967 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095438678.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:52:53 Heat of formation + Delta-G solvation = -18.645379 kcal Electronic energy + Delta-G solvation = -27440.448894 eV Core-core repulsion = 23224.665019 eV Total energy + Delta-G solvation = -4215.783874 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.120 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.34216 -41.81262 -41.40464 -39.21284 -37.85417 -37.74183 -35.22672 -34.14144 -33.02508 -32.09343 -30.67990 -30.49560 -27.90226 -27.11417 -26.44488 -24.12263 -23.59625 -22.66098 -21.81241 -21.14651 -20.63917 -19.84443 -18.81656 -18.70235 -18.14808 -18.04659 -17.56734 -17.30411 -17.10843 -16.68922 -16.24449 -15.81673 -15.57570 -15.17019 -14.72168 -14.49541 -14.43822 -14.12707 -13.90117 -13.70767 -13.33699 -13.08633 -12.92071 -12.84084 -12.69849 -12.66394 -12.40156 -12.38195 -12.26674 -12.23424 -11.90689 -11.85164 -11.27339 -10.96167 -10.69288 -9.76460 -9.69402 -9.67175 -8.94418 -8.26423 -6.18254 -1.34476 -0.04045 0.22397 0.23935 1.38672 1.47104 1.60513 1.70340 1.97570 2.23494 2.29696 2.69807 2.83961 3.37804 3.45034 3.54128 3.57073 3.69222 3.74174 3.82879 3.92227 3.96248 4.06936 4.14689 4.23742 4.41136 4.52267 4.61472 4.66471 4.74098 4.86951 4.91541 4.95379 5.02030 5.24991 5.31879 5.43309 5.76701 6.09278 6.21634 6.35658 6.39078 6.72701 6.88647 7.09004 7.49131 8.38559 8.70968 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.015866 B = 0.002499 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.406776 B =11199.652523 C =11999.985349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.028 3.972 3 Si 0.987 3.013 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.242 1.242 7 C -0.465 4.465 8 H 0.098 0.902 9 C 0.355 3.645 10 N -0.578 5.578 11 C -0.063 4.063 12 C -0.155 4.155 13 N -0.502 5.502 14 C 0.097 3.903 15 C 0.099 3.901 16 H 0.082 0.918 17 O -0.561 6.561 18 C 0.033 3.967 19 O -0.319 6.319 20 C 0.129 3.871 21 C -0.145 4.145 22 C -0.059 4.059 23 C -0.092 4.092 24 C -0.023 4.023 25 N 0.028 4.972 26 O -0.206 6.206 27 O -0.147 6.147 28 C -0.117 4.117 29 H 0.271 0.729 30 H 0.143 0.857 31 H 0.177 0.823 32 H 0.119 0.881 33 H 0.098 0.902 34 H 0.382 0.618 35 H 0.111 0.889 36 H 0.101 0.899 37 H 0.182 0.818 38 H 0.196 0.804 39 H 0.172 0.828 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.701 -11.180 -0.460 25.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.190 4.190 3 Si 0.808 3.192 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.165 1.165 7 C -0.504 4.504 8 H 0.116 0.884 9 C 0.110 3.890 10 N -0.300 5.300 11 C -0.213 4.213 12 C -0.286 4.286 13 N -0.191 5.191 14 C -0.027 4.027 15 C 0.038 3.962 16 H 0.100 0.900 17 O -0.368 6.368 18 C -0.042 4.042 19 O -0.233 6.233 20 C 0.082 3.918 21 C -0.164 4.164 22 C -0.077 4.077 23 C -0.111 4.111 24 C -0.106 4.106 25 N 0.544 4.456 26 O -0.412 6.412 27 O -0.369 6.369 28 C -0.137 4.137 29 H 0.081 0.919 30 H 0.161 0.839 31 H 0.194 0.806 32 H 0.137 0.863 33 H 0.116 0.884 34 H 0.231 0.769 35 H 0.129 0.871 36 H 0.119 0.881 37 H 0.199 0.801 38 H 0.213 0.787 39 H 0.190 0.810 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 21.165 -10.715 -0.566 23.729 hybrid contribution 0.401 0.237 0.471 0.662 sum 21.566 -10.478 -0.096 23.977 Atomic orbital electron populations 1.70197 1.09208 1.28399 1.34913 1.26775 0.95413 1.04207 0.92614 0.85140 0.79380 0.76065 0.78647 1.19174 1.21208 1.16535 1.18394 0.94436 0.87659 1.49956 0.88374 1.20551 0.87336 0.85426 0.95641 1.71164 1.12699 1.16598 1.29566 1.22550 0.97834 0.92086 1.08853 1.22392 0.88037 0.95836 1.22313 1.45431 1.05647 1.06792 1.61249 1.22168 0.79784 1.04303 0.96441 1.22290 0.93797 0.84278 0.95789 0.90024 1.86754 1.74797 1.16554 1.58665 1.23783 0.95184 1.04746 0.80490 1.86195 1.24126 1.81999 1.30962 1.18759 0.84985 0.95344 0.92708 1.22231 0.94906 0.98982 1.00256 1.21521 0.94848 0.95287 0.96029 1.21389 1.01497 0.97291 0.90955 1.20863 0.95685 1.13021 0.80998 1.43920 1.00400 0.97257 1.04017 1.94583 1.57390 1.52001 1.37208 1.94483 1.02445 1.49151 1.90831 1.20073 0.93815 1.02148 0.97672 0.91947 0.83949 0.80622 0.86341 0.88409 0.76884 0.87115 0.88065 0.80090 0.78697 0.81026 0.84076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -46.16 11.92 21.88 0.26 -45.90 16 2 C 0.03 1.45 5.49 85.35 0.47 1.92 16 3 Si 0.99 38.09 29.57 68.60 2.03 40.12 16 4 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 5 H -0.29 -11.33 7.11 99.48 0.71 -10.62 16 6 H -0.24 -8.37 7.11 99.48 0.71 -7.66 16 7 C -0.47 -23.51 7.99 23.18 0.19 -23.32 16 8 H 0.10 4.18 6.20 -2.91 -0.02 4.16 16 9 C 0.35 18.95 7.16 133.59 0.96 19.91 16 10 N -0.58 -34.30 9.43 -194.17 -1.83 -36.13 16 11 C -0.06 -3.17 11.85 84.08 1.00 -2.18 16 12 C -0.16 -6.60 11.60 83.51 0.97 -5.63 16 13 N -0.50 -21.17 2.78 -520.83 -1.45 -22.62 16 14 C 0.10 2.59 5.52 86.38 0.48 3.07 16 15 C 0.10 2.56 3.49 30.59 0.11 2.66 16 16 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 17 O -0.56 -19.09 11.95 -144.34 -1.72 -20.81 16 18 C 0.03 0.49 4.37 71.98 0.31 0.80 16 19 O -0.32 -6.73 10.10 -87.77 -0.89 -7.62 16 20 C 0.13 2.18 6.69 22.51 0.15 2.33 16 21 C -0.15 -1.21 9.04 22.37 0.20 -1.01 16 22 C -0.06 -0.33 10.04 22.26 0.22 -0.11 16 23 C -0.09 -1.04 9.55 22.28 0.21 -0.83 16 24 C -0.02 -0.44 6.85 36.36 0.25 -0.19 16 25 N 0.03 0.71 4.45 -46.52 -0.21 0.50 16 26 O -0.21 -5.97 18.45 18.88 0.35 -5.62 16 27 O -0.15 -3.54 18.44 18.89 0.35 -3.19 16 28 C -0.12 -2.42 9.49 22.36 0.21 -2.21 16 29 H 0.27 14.41 8.29 -92.71 -0.77 13.64 16 30 H 0.14 6.51 8.06 -2.91 -0.02 6.49 16 31 H 0.18 5.79 8.06 -2.91 -0.02 5.76 16 32 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.10 2.36 7.54 -2.39 -0.02 2.35 16 34 H 0.38 10.64 7.99 -74.06 -0.59 10.05 16 35 H 0.11 0.86 7.65 -2.39 -0.02 0.84 16 36 H 0.10 0.95 7.67 -2.38 -0.02 0.93 16 37 H 0.18 0.31 6.30 -2.91 -0.02 0.29 16 38 H 0.20 -0.55 8.06 -2.91 -0.02 -0.57 16 39 H 0.17 1.30 7.61 -2.91 -0.02 1.28 16 40 H 0.14 3.35 7.61 -2.91 -0.02 3.33 16 Total: -1.00 -83.39 354.86 3.13 -80.26 By element: Atomic # 1 Polarization: 25.27 SS G_CDS: 0.52 Total: 25.79 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: 5.72 Total: -4.78 kcal Atomic # 7 Polarization: -100.92 SS G_CDS: -3.23 Total: -104.14 kcal Atomic # 8 Polarization: -35.33 SS G_CDS: -1.91 Total: -37.24 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 2.03 Total: 40.12 kcal Total: -83.39 3.13 -80.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095438678.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.614 kcal (2) G-P(sol) polarization free energy of solvation -83.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds